View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3759_high_1 (Length: 582)
Name: NF3759_high_1
Description: NF3759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3759_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 110 - 570
Target Start/End: Complemental strand, 19470125 - 19469665
Alignment:
| Q |
110 |
aaacaaaaactacagattaaataaaggaattgtcacaatacaaattaatggattcaagtacttcctccaaccaaatcctatcaggaacctgaagagccaa |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
19470125 |
aaacaaaaactacagattaaataaaggaattgtcacaatacaaattaatggattcaagtacttcctctaaccaaatcctatcaggaacctgaagagccaa |
19470026 |
T |
|
| Q |
210 |
atgagccaactcatgggccaccaaatttcattgtctcttggtaaaagaggaaatcacacttattaaaagttttacttaacgtgaaaacatctaataatat |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
19470025 |
atgagccaactcatgggccaccaaatttcattgtctcttggtaaaagaggaaagcacacttgttaaaagttttacttaacctgaaaacatctaataatat |
19469926 |
T |
|
| Q |
310 |
tccctagataagttccaggttcttcaccagcactaatgatcttcttcactaacccttcattatcactcaaactccactgtgcgaaaacagcagtccttga |
409 |
Q |
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|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
19469925 |
tctctagataagttccaggttcttcagcagcactaatgatcttcttcactaacccttcattatcactgaaattccactgtgcgaaaacagcagtccttga |
19469826 |
T |
|
| Q |
410 |
ccaaaatcatagtcttgtacaaagcataaccctcagcttcttctggttgaacaaagtcatccctctttcaggttgtcgttgctaaaacatgtccatcttc |
509 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
19469825 |
ccaaaatcatagtcttatacaaagcataaccctcagcttcttctggttgaacaaagtcatccctcttccaggttgttgttgctaaaacatgtccatcttc |
19469726 |
T |
|
| Q |
510 |
atcttagaaaaccgcacccaacccccaggtattttcctgttgcaaatttgcatccgagtat |
570 |
Q |
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|||| |||||||| |||||||||||||||||||||||| ||| | ||||||||| |||||| |
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| T |
19469725 |
atctcagaaaaccacacccaacccccaggtattttcctattgtagatttgcatctgagtat |
19469665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 272 - 570
Target Start/End: Original strand, 47865355 - 47865653
Alignment:
| Q |
272 |
ttaaaagttttacttaacgtgaaaacatctaataatattccctagataagttccaggttcttcaccagcactaatgatcttcttcactaacccttcatta |
371 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47865355 |
ttaaaagttttacttaacgtgaaaacatctaataatattccctagataagttccaggttcttcaccagcactaatgatcttcttcactaacccttcatta |
47865454 |
T |
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| Q |
372 |
tcactcaaactccactgtgcgaaaacagcagtccttgaccaaaatcatagtcttgtacaaagcataaccctcagcttcttctggttgaacaaagtcatcc |
471 |
Q |
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| T |
47865455 |
tcactcaaactccactgtgcgaaaacagcagtccttgaccaaaatcatagtcttgtacaaagcataaccctcagcttcttctggttgaacaaagtcatcc |
47865554 |
T |
|
| Q |
472 |
ctctttcaggttgtcgttgctaaaacatgtccatcttcatcttagaaaaccgcacccaacccccaggtattttcctgttgcaaatttgcatccgagtat |
570 |
Q |
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| T |
47865555 |
ctctttcaggttgtcgttgctaaaacatgtccatcttcatcttagaaaaccgcacccaacccccaggtattttcctgttgcaaatttgcatctgagtat |
47865653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 109 - 280
Target Start/End: Original strand, 47864317 - 47864488
Alignment:
| Q |
109 |
gaaacaaaaactacagattaaataaaggaattgtcacaatacaaattaatggattcaagtacttcctccaaccaaatcctatcaggaacctgaagagcca |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
47864317 |
gaaacaaaaactacagattaaataaaggaattgtcacaatacaaattaatggattcaagcacttcctccaaccaaatcctatcaggaacctgaagagcca |
47864416 |
T |
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| Q |
209 |
aatgagccaactcatgggccaccaaatttcattgtctcttggtaaaagaggaaatcacacttattaaaagtt |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47864417 |
aatgagccaactcatgggccaccaaatttcattgtctcttggtaaaagaggaaatcacacttattaaaagtt |
47864488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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