View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3759_low_2 (Length: 522)

Name: NF3759_low_2
Description: NF3759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3759_low_2
NF3759_low_2
[»] chr4 (4 HSPs)
chr4 (13-504)||(2877492-2877983)
chr4 (262-504)||(2887264-2887506)
chr4 (262-504)||(2896848-2897090)
chr4 (422-492)||(51049647-51049717)
[»] chr2 (3 HSPs)
chr2 (288-504)||(44222831-44223047)
chr2 (288-504)||(44233653-44233869)
chr2 (265-504)||(44210631-44210870)
[»] chr7 (2 HSPs)
chr7 (288-504)||(39537691-39537907)
chr7 (288-450)||(39588923-39589085)
[»] chr3 (1 HSPs)
chr3 (347-505)||(49773508-49773666)
[»] chr1 (2 HSPs)
chr1 (371-504)||(2160301-2160434)
chr1 (371-504)||(2148473-2148606)


Alignment Details
Target: chr4 (Bit Score: 480; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 13 - 504
Target Start/End: Original strand, 2877492 - 2877983
Alignment:
Q  13 aatatcttgacataatgttggggtatcatgaatcatctcattagattagtttcctatcttagtatttgaagattactttccatattcaattatgatttta 112  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2877492 aatatcttgacataatgttggcgtatcatgaatcatctcattagattagtttcctatcttagtatttgaagattactttccatattcaattatgatttta 2877591  T
Q  113 ggtcttgtatccttataaataagggttagtagtatttagtcttttgtatcatattctcttgactttattattatgattaaagattggttttctctcttga 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2877592 ggtcttgtatccttataaataagggttagtagtatttagtcttttgtatcgtattctcttgactttattattatgattaaagattagttttctctcttga 2877691  T
Q  213 cttcaacaattctaaataacttagctttcgaacttagacttgttattcttacttttgaatctaacaaatatttgtagatgttcattgaggaagttatgga 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2877692 cttcaacaattctaaataacttagctttcgaacttagacttgttattcttacttttgaatctaacaaatatttgtagatgttcattgaggaagttatgga 2877791  T
Q  313 actagtcgagctgaatccgctgaggaactcactagttggtttgcctggtgtgagcggtctttcaaccgaacaacgcaagaggttaactatttcagttgaa 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2877792 actagtcgagctgaatccgctgaggaactcactagttggtttgcctggtgtgagcggtctttcaaccgaacaacgcaagaggttaactatttcagttgaa 2877891  T
Q  413 ttagtggccaatccatccataattttcatggacgagcctacatctggattagatgctagagctgctgcaattgttatgcgaaccgttaggaa 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2877892 ttagtggccaatccatccataattttcatggacgagcctacatctggattagatgctagagctgctgcaattgttatgcgaaccgttaggaa 2877983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 262 - 504
Target Start/End: Original strand, 2887264 - 2887506
Alignment:
Q  262 tacttttgaatctaacaaatatttgtagatgttcattgaggaagttatggaactagtcgagctgaatccgctgaggaactcactagttggtttgcctggt 361  Q
    |||||||| |||| | ||||  ||||||||||||||||||||||| ||||||||||| ||||| || ||  |||| |||||  | |||||||||||||||    
T  2887264 tacttttggatctgataaatggttgtagatgttcattgaggaagtcatggaactagtggagctcaacccattgagaaactctttggttggtttgcctggt 2887363  T
Q  362 gtgagcggtctttcaaccgaacaacgcaagaggttaactatttcagttgaattagtggccaatccatccataattttcatggacgagcctacatctggat 461  Q
    ||||  ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2887364 gtgaatggtctttcaaccgaacaacgcaagaggctaactattgcagttgaattagtggccaatccatccataattttcatggatgagcctacatctggat 2887463  T
Q  462 tagatgctagagctgctgcaattgttatgcgaaccgttaggaa 504  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  2887464 tagatgctagagctgctgcaattgttatgcgaaccgttaggaa 2887506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 262 - 504
Target Start/End: Complemental strand, 2897090 - 2896848
Alignment:
Q  262 tacttttgaatctaacaaatatttgtagatgttcattgaggaagttatggaactagtcgagctgaatccgctgaggaactcactagttggtttgcctggt 361  Q
    |||||| |||||| | ||||  |||||||||||||| |||||||| ||||||||||| ||||| |||||  |||| |||||  | |||||||||||||||    
T  2897090 tactttggaatctgataaatggttgtagatgttcatcgaggaagtcatggaactagtggagctcaatccattgagaaactctttggttggtttgcctggt 2896991  T
Q  362 gtgagcggtctttcaaccgaacaacgcaagaggttaactatttcagttgaattagtggccaatccatccataattttcatggacgagcctacatctggat 461  Q
    ||||  || |||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2896990 gtgaatggcctttcaactgaacaacgcaagaggctaactattgcagttgaattagtggccaatccatccataattttcatggatgagcctacatctggat 2896891  T
Q  462 tagatgctagagctgctgcaattgttatgcgaaccgttaggaa 504  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  2896890 tagatgctagagctgctgcaattgttatgcgaacagttaggaa 2896848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 492
Target Start/End: Original strand, 51049647 - 51049717
Alignment:
Q  422 aatccatccataattttcatggacgagcctacatctggattagatgctagagctgctgcaattgttatgcg 492  Q
    |||||||| |||||||| ||||| || |||||||| || || |||||| ||||||||||| | ||||||||    
T  51049647 aatccatcgataatttttatggatgaacctacatcaggtttggatgctcgagctgctgcagtagttatgcg 51049717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 3e-52; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 288 - 504
Target Start/End: Complemental strand, 44223047 - 44222831
Alignment:
Q  288 agatgttcattgaggaagttatggaactagtcgagctgaatccgctgaggaactcactagttggtttgcctggtgtgagcggtctttcaaccgaacaacg 387  Q
    ||||||| ||||| ||||| ||||| ||||| ||||||||  || |||||||||| ||||||||||||||||||||||| ||||| ||||| ||||| ||    
T  44223047 agatgtttattgatgaagtcatggatctagtggagctgaactcgttgaggaactctctagttggtttgcctggtgtgagtggtctctcaactgaacagcg 44222948  T
Q  388 caagaggttaactatttcagttgaattagtggccaatccatccataattttcatggacgagcctacatctggattagatgctagagctgctgcaattgtt 487  Q
    ||||||  | |||||| |||| ||| | ||||| |||||||| |||||||||||||| |||||||| ||||| |||||||||||||| ||||||||||||    
T  44222947 caagagactgactattgcagtcgaacttgtggctaatccatctataattttcatggatgagcctacttctggtttagatgctagagcggctgcaattgtt 44222848  T
Q  488 atgcgaaccgttaggaa 504  Q
    |||||||| || |||||    
T  44222847 atgcgaactgtaaggaa 44222831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 288 - 504
Target Start/End: Complemental strand, 44233869 - 44233653
Alignment:
Q  288 agatgttcattgaggaagttatggaactagtcgagctgaatccgctgaggaactcactagttggtttgcctggtgtgagcggtctttcaaccgaacaacg 387  Q
    ||||||| ||||| ||||| ||||| ||||| ||||||||  |  |||||||||| ||||||||||||||||||||||| ||||| ||||| ||||| ||    
T  44233869 agatgtttattgacgaagtcatggatctagtggagctgaactcattgaggaactctctagttggtttgcctggtgtgagtggtctctcaactgaacagcg 44233770  T
Q  388 caagaggttaactatttcagttgaattagtggccaatccatccataattttcatggacgagcctacatctggattagatgctagagctgctgcaattgtt 487  Q
    ||||||  | |||||| |||||||| | ||||| |||||||| |||||||| ||||| |||||||| ||||| |||||||||||||||||||||||||||    
T  44233769 caagagactgactattgcagttgaacttgtggctaatccatctataatttttatggatgagcctacttctggtttagatgctagagctgctgcaattgtt 44233670  T
Q  488 atgcgaaccgttaggaa 504  Q
    ||| |||| || |||||    
T  44233669 atgagaactgtaaggaa 44233653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 265 - 504
Target Start/End: Complemental strand, 44210870 - 44210631
Alignment:
Q  265 ttttgaatctaacaaatatttgtagatgttcattgaggaagttatggaactagtcgagctgaatccgctgaggaactcactagttggtttgcctggtgtg 364  Q
    |||||||  ||||||||  ||| ||||||| ||||||||||| ||||| || || ||||||||  || ||||| |||| || |||||||||||||||||     
T  44210870 ttttgaacataacaaatgcttgcagatgtttattgaggaagtaatggatcttgtggagctgaactcgttgagggactccctcgttggtttgcctggtgtt 44210771  T
Q  365 agcggtctttcaaccgaacaacgcaagaggttaactatttcagttgaattagtggccaatccatccataattttcatggacgagcctacatctggattag 464  Q
    || ||||| ||||| |||||||| || ||||| |||||| |||||||| ||||||| ||||| ||||||||||||||||| || || || ||||| ||||    
T  44210770 agtggtctctcaacggaacaacgtaaaaggttgactattgcagttgaactagtggctaatccgtccataattttcatggatgaaccaacttctggtttag 44210671  T
Q  465 atgctagagctgctgcaattgttatgcgaaccgttaggaa 504  Q
    |||||||||||||||||||||||||| |||| || |||||    
T  44210670 atgctagagctgctgcaattgttatgagaactgtaaggaa 44210631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 288 - 504
Target Start/End: Complemental strand, 39537907 - 39537691
Alignment:
Q  288 agatgttcattgaggaagttatggaactagtcgagctgaatccgctgaggaactcactagttggtttgcctggtgtgagcggtctttcaaccgaacaacg 387  Q
    ||||||||||||| ||||| |||||||| || || ||||| || ||| ||||| || |||| ||  | |||||||| ||| |||| ||||| || || ||    
T  39537907 agatgttcattgaagaagtcatggaacttgtggaactgaaaccactgcggaacgcattagtaggactacctggtgttagcagtctctcaacggagcagcg 39537808  T
Q  388 caagaggttaactatttcagttgaattagtggccaatccatccataattttcatggacgagcctacatctggattagatgctagagctgctgcaattgtt 487  Q
    ||| ||| | |||||| ||||||| || || || ||||| || ||||| |||||||| ||||| || |||||| | ||||| || ||||| || ||||||    
T  39537807 caaaaggctgactattgcagttgagttggttgctaatccttctataatattcatggatgagccaacttctggacttgatgcaagggctgcagctattgtt 39537708  T
Q  488 atgcgaaccgttaggaa 504  Q
    ||| |||| ||||||||    
T  39537707 atgagaacagttaggaa 39537691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 450
Target Start/End: Complemental strand, 39589085 - 39588923
Alignment:
Q  288 agatgttcattgaggaagttatggaactagtcgagctgaatccgctgaggaactcactagttggtttgcctggtgtgagcggtctttcaaccgaacaacg 387  Q
    ||||||||||||||||||| ||||| || || ||||| || ||||| ||| |  || | || || ||||| || || || ||||| || || || |||||    
T  39589085 agatgttcattgaggaagtcatggagcttgtggagctaaacccgcttagggatgcaattgtcggattgccaggggttagtggtctatcgacggagcaacg 39588986  T
Q  388 caagaggttaactatttcagttgaattagtggccaatccatccataattttcatggacgagcc 450  Q
    ||| ||||| ||  || ||||||| |||||||| ||||| || ||||| |||||||| |||||    
T  39588985 caaaaggttgacagttgcagttgagttagtggctaatccttctataatattcatggatgagcc 39588923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 347 - 505
Target Start/End: Original strand, 49773508 - 49773666
Alignment:
Q  347 gttggtttgcctggtgtgagcggtctttcaaccgaacaacgcaagaggttaactatttcagttgaattagtggccaatccatccataattttcatggacg 446  Q
    ||||| || ||||||||||  ||||| || || ||||| |||||||||||||| ||| |||||||| | || ||||||||||| || || |||||||| |    
T  49773508 gttggattacctggtgtgaatggtctgtccacagaacagcgcaagaggttaacgattgcagttgaacttgttgccaatccatctattatattcatggatg 49773607  T
Q  447 agcctacatctggattagatgctagagctgctgcaattgttatgcgaaccgttaggaat 505  Q
    | ||||| |||||  | ||||| ||||||||||| || || ||| |||| || ||||||    
T  49773608 aacctacctctggccttgatgcaagagctgctgctatagtaatgagaacagtgaggaat 49773666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 371 - 504
Target Start/End: Complemental strand, 2160434 - 2160301
Alignment:
Q  371 ctttcaaccgaacaacgcaagaggttaactatttcagttgaattagtggccaatccatccataattttcatggacgagcctacatctggattagatgcta 470  Q
    ||||| |||||||||||||||||  |||| ||  |||||||| | || || |||||||| ||||| |||||||| ||||| || |||||  | |||||||    
T  2160434 ctttcgaccgaacaacgcaagagactaacgatcgcagttgaacttgtagcgaatccatcgataatattcatggatgagccaacctctggccttgatgcta 2160335  T
Q  471 gagctgctgcaattgttatgcgaaccgttaggaa 504  Q
    |||| ||||||||||| ||| |||| || |||||    
T  2160334 gagcagctgcaattgtaatgagaacagtgaggaa 2160301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 371 - 504
Target Start/End: Complemental strand, 2148606 - 2148473
Alignment:
Q  371 ctttcaaccgaacaacgcaagaggttaactatttcagttgaattagtggccaatccatccataattttcatggacgagcctacatctggattagatgcta 470  Q
    |||||||||||||| ||||||||  | |||||| |||||||| | || || |||||||| ||||| |||||||| || || || |||||  | ||||||     
T  2148606 ctttcaaccgaacagcgcaagagacttactattgcagttgaacttgtagcgaatccatcgataatattcatggatgaaccaacctctggcctggatgctc 2148507  T
Q  471 gagctgctgcaattgttatgcgaaccgttaggaa 504  Q
    |||| ||||| ||||| |||||||| || |||||    
T  2148506 gagcagctgcgattgtaatgcgaacagtaaggaa 2148473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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