View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3759_low_3 (Length: 419)

Name: NF3759_low_3
Description: NF3759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3759_low_3
NF3759_low_3
[»] chr3 (23 HSPs)
chr3 (176-406)||(53689253-53689483)
chr3 (207-411)||(52311477-52311683)
chr3 (191-317)||(12812825-12812951)
chr3 (163-340)||(45458391-45458567)
chr3 (164-268)||(29129130-29129234)
chr3 (248-341)||(14459163-14459256)
chr3 (246-339)||(25489560-25489653)
chr3 (65-151)||(15993035-15993120)
chr3 (223-316)||(52130851-52130943)
chr3 (160-268)||(19009621-19009728)
chr3 (359-411)||(52130972-52131024)
chr3 (164-236)||(52126885-52126957)
chr3 (131-163)||(50719204-50719236)
chr3 (131-163)||(50793612-50793644)
chr3 (112-151)||(14171226-14171265)
chr3 (176-227)||(14459257-14459308)
chr3 (163-241)||(25612613-25612692)
chr3 (129-162)||(29157525-29157558)
chr3 (164-236)||(44712542-44712615)
chr3 (162-215)||(52311686-52311739)
chr3 (164-268)||(18996254-18996358)
chr3 (164-268)||(18998793-18998897)
chr3 (123-151)||(48763556-48763584)
[»] chr7 (15 HSPs)
chr7 (207-411)||(37362425-37362629)
chr7 (168-322)||(1971096-1971248)
chr7 (234-322)||(7841360-7841448)
chr7 (349-406)||(7841452-7841508)
chr7 (359-411)||(1971308-1971360)
chr7 (164-236)||(24759474-24759546)
chr7 (4-43)||(8170782-8170821)
chr7 (68-162)||(30063314-30063408)
chr7 (127-163)||(39262778-39262814)
chr7 (164-228)||(11503204-11503268)
chr7 (127-163)||(48844140-48844176)
chr7 (131-162)||(2440075-2440106)
chr7 (162-236)||(43903418-43903493)
chr7 (112-150)||(40725705-40725743)
chr7 (164-268)||(45124784-45124888)
[»] chr4 (25 HSPs)
chr4 (6-163)||(2304176-2304341)
chr4 (164-341)||(14210314-14210491)
chr4 (164-341)||(14211283-14211460)
chr4 (164-341)||(14212234-14212411)
chr4 (164-341)||(14214171-14214348)
chr4 (164-341)||(14215140-14215317)
chr4 (164-341)||(14218011-14218188)
chr4 (164-341)||(14219950-14220127)
chr4 (164-341)||(14220901-14221078)
chr4 (164-341)||(14209363-14209540)
chr4 (164-341)||(14213203-14213380)
chr4 (164-341)||(14216109-14216286)
chr4 (164-341)||(14217060-14217237)
chr4 (164-341)||(14218981-14219158)
chr4 (164-341)||(14221870-14222047)
chr4 (164-341)||(14222839-14223016)
chr4 (92-163)||(16030588-16030659)
chr4 (233-316)||(41810243-41810326)
chr4 (164-268)||(1068941-1069045)
chr4 (163-268)||(8540893-8540998)
chr4 (68-163)||(33315872-33315967)
chr4 (349-411)||(41810365-41810426)
chr4 (164-228)||(14586846-14586910)
chr4 (167-221)||(37618988-37619041)
chr4 (164-236)||(30176040-30176112)
[»] chr1 (14 HSPs)
chr1 (164-341)||(40981489-40981666)
chr1 (143-341)||(50290411-50290610)
chr1 (164-268)||(29836239-29836343)
chr1 (68-162)||(41862753-41862847)
chr1 (90-162)||(51382509-51382581)
chr1 (196-313)||(27843642-27843759)
chr1 (223-316)||(14184747-14184840)
chr1 (164-257)||(38240176-38240269)
chr1 (163-267)||(6919549-6919653)
chr1 (359-411)||(7607901-7607953)
chr1 (359-411)||(31770889-31770941)
chr1 (164-221)||(50860118-50860175)
chr1 (129-163)||(38509035-38509069)
chr1 (129-162)||(39183239-39183272)
[»] chr2 (11 HSPs)
chr2 (164-341)||(31409599-31409776)
chr2 (163-236)||(26449092-26449165)
chr2 (97-162)||(6673892-6673957)
chr2 (163-221)||(4768477-4768535)
chr2 (162-236)||(22145644-22145718)
chr2 (131-165)||(27534974-27535008)
chr2 (129-162)||(16970265-16970298)
chr2 (129-162)||(28003478-28003511)
chr2 (163-236)||(38403354-38403427)
chr2 (129-162)||(38993391-38993424)
chr2 (127-163)||(32286934-32286970)
[»] chr5 (8 HSPs)
chr5 (66-160)||(6702055-6702149)
chr5 (164-236)||(40946710-40946782)
chr5 (163-236)||(4077837-4077910)
chr5 (173-236)||(16352130-16352193)
chr5 (68-162)||(11298471-11298565)
chr5 (68-163)||(37340322-37340417)
chr5 (173-221)||(40162228-40162276)
chr5 (129-162)||(26113650-26113683)
[»] chr8 (21 HSPs)
chr8 (164-317)||(29729269-29729421)
chr8 (163-268)||(16395558-16395663)
chr8 (98-163)||(45239360-45239425)
chr8 (163-236)||(38681136-38681209)
chr8 (164-236)||(26955412-26955484)
chr8 (94-162)||(42319906-42319974)
chr8 (235-306)||(19962134-19962204)
chr8 (96-162)||(38684834-38684900)
chr8 (162-313)||(765506-765657)
chr8 (108-164)||(5240911-5240967)
chr8 (92-163)||(18622791-18622862)
chr8 (71-162)||(34310287-34310378)
chr8 (173-236)||(38682400-38682462)
chr8 (122-165)||(43418197-43418240)
chr8 (162-236)||(8022722-8022796)
chr8 (162-268)||(40173273-40173379)
chr8 (131-164)||(9885366-9885399)
chr8 (127-163)||(32721323-32721359)
chr8 (131-162)||(4970052-4970083)
chr8 (116-151)||(42293495-42293530)
chr8 (131-163)||(23830912-23830944)
[»] chr6 (14 HSPs)
chr6 (122-192)||(20910726-20910793)
chr6 (122-192)||(20925174-20925241)
chr6 (94-162)||(31661143-31661211)
chr6 (68-162)||(15298381-15298475)
chr6 (167-236)||(8840653-8840722)
chr6 (168-236)||(23073437-23073505)
chr6 (66-103)||(20910836-20910873)
chr6 (66-103)||(20925284-20925321)
chr6 (164-227)||(25357557-25357620)
chr6 (167-237)||(2319907-2319977)
chr6 (127-164)||(7018679-7018716)
chr6 (129-165)||(18328499-18328535)
chr6 (164-236)||(18645950-18646022)
chr6 (131-163)||(26846230-26846262)
[»] scaffold0192 (1 HSPs)
scaffold0192 (65-163)||(19120-19218)
[»] scaffold0790 (1 HSPs)
scaffold0790 (109-163)||(3948-4002)
[»] scaffold0096 (1 HSPs)
scaffold0096 (163-262)||(32872-32971)
[»] scaffold0188 (1 HSPs)
scaffold0188 (129-162)||(28312-28345)
[»] scaffold0005 (1 HSPs)
scaffold0005 (164-228)||(230464-230528)


Alignment Details
Target: chr3 (Bit Score: 171; Significance: 1e-91; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 176 - 406
Target Start/End: Original strand, 53689253 - 53689483
Alignment:
Q  176 taatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaatctatccacaccgttagatcattgtaattaggggtggtt 275  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||| ||||    
T  53689253 taatcctagcaaacatgcttaccctaattgccaaaccctaaacctacttttttggctccaatctatcctgaccgttagatcattgtaattaagggaggtt 53689352  T
Q  276 agtacatcagccgttgatcaaatctcactccttgaaaattgacacacccacatagggaaacaaaacctcttcttctccattgtttgttcaataccgatgc 375  Q
    || ||||||||| ||||||||||||||||||||||||||| |||||| | ||||||||||||||||| ||||||||| ||| ||||||||||||||||||    
T  53689353 agcacatcagccattgatcaaatctcactccttgaaaattaacacacgcgcatagggaaacaaaaccccttcttctctattatttgttcaataccgatgc 53689452  T
Q  376 aaactctacagaaccccatgcttccctcttc 406  Q
    |||||||||||| ||||||||||||||||||    
T  53689453 aaactctacagagccccatgcttccctcttc 53689483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 207 - 411
Target Start/End: Complemental strand, 52311683 - 52311477
Alignment:
Q  207 caaaccctaaacctacttttttggctccaatctatccacaccgttagatcattgtaattaggggtggttagtacatcagccgttgatcaaatctcactcc 306  Q
    ||||||||||||||||||||||| |||||||||||||  |||||||||| |||||||||||||| |||||| ||||||| ||||||||||||||||||||    
T  52311683 caaaccctaaacctacttttttgcctccaatctatcctgaccgttagatgattgtaattaggggaggttagcacatcagtcgttgatcaaatctcactcc 52311584  T
Q  307 ttgaaaattgacaca--cccacatagggaaacaaaacctcttcttctccattgtttgttcaataccgatgcaaactctacagaaccccatgcttccctct 404  Q
    |||||||||||||||  | || || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| | ||||||    
T  52311583 ttgaaaattgacacatgcgcatatggggaaacaaaacctcttcttctccattatttgttcaataccgatgcaaactctacagagccccatgttgccctct 52311484  T
Q  405 tcatctc 411  Q
    || ||||    
T  52311483 tcttctc 52311477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 191 - 317
Target Start/End: Complemental strand, 12812951 - 12812825
Alignment:
Q  191 tgtttaccctaattgtcaaaccctaaacctacttttttggctccaatctatccacaccgttagatcattgtaattaggggtggttagtacatcagccgtt 290  Q
    |||||| |||||||  ||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||    
T  12812951 tgtttaacctaatttccaaaccccaaacctacttttttcgctccaatctatccagaccgttagatcattgtaattaggggaggttagcacatcagccgtt 12812852  T
Q  291 gatcaaatctcactccttgaaaattga 317  Q
    ||||||||||||||| |||||||||||    
T  12812851 gatcaaatctcactcattgaaaattga 12812825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 163 - 340
Target Start/End: Complemental strand, 45458567 - 45458391
Alignment:
Q  163 tatcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaatctatccacaccgttagatcattgta 262  Q
    ||||||||| |||| ||||||| ||||||| ||||||||||| || |||| |||| ||||||||||| |||||||| ||||| | |||||||||||||||    
T  45458567 tatcctttatatctgatcctagtaaacatgcttaccctaatt-tccaaccttaaatctacttttttgactccaatccatccaaatcgttagatcattgta 45458469  T
Q  263 attaggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacacccacatagggaaacaaaa 340  Q
    |||| || ||||||  |||| |||| ||||||||||||||||||||||||||||| |||| ||| |||| ||||||||    
T  45458468 attaaggatggttaacacatgagcccttgatcaaatctcactccttgaaaattgaaacacacacgtaggaaaacaaaa 45458391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 164 - 268
Target Start/End: Original strand, 29129130 - 29129234
Alignment:
Q  164 atcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaatctatccacaccgttagatcattgtaa 263  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||| | |||    
T  29129130 atcctttatatctaatcctagcaaacatgtttaccctaattgccaaaccctaaacctacttttttggctccaatctatcctgaccgttagatcaatctaa 29129229  T
Q  264 ttagg 268  Q
    |||||    
T  29129230 ttagg 29129234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 248 - 341
Target Start/End: Complemental strand, 14459256 - 14459163
Alignment:
Q  248 cgttagatcattgtaattaggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacacccacatagggaaacaaaac 341  Q
    |||||||||||| ||| |||||| |||||| ||||||| ||||||||||||||||||||||||||||||| ||||   ||||||||||||||||    
T  14459256 cgttagatcattataactaggggaggttagcacatcagtcgttgatcaaatctcactccttgaaaattgatacacgagcatagggaaacaaaac 14459163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 246 - 339
Target Start/End: Original strand, 25489560 - 25489653
Alignment:
Q  246 accgttagatcattgtaattaggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacacccacatagggaaacaaa 339  Q
    ||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||| ||| |||||||| ||||   ||||||||||||||    
T  25489560 accgttagatcattgtaattaggagcggttagtacatcagccgtttatcaaatctcacttcttaaaaattgaaacacgtgcatagggaaacaaa 25489653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 65 - 151
Target Start/End: Complemental strand, 15993120 - 15993035
Alignment:
Q  65 ctgattttttaaattccatttcaacatatttcgttttattgtttatcaaattattttggctcataagacccgtgcggcgcacgggtc 151  Q
    |||| ||||||||||||||| ||||||||||| ||||||||| |||| |||||||  || |||||||||||||||||||||||||||    
T  15993120 ctgactttttaaattccattccaacatatttccttttattgtgtatc-aattattccggttcataagacccgtgcggcgcacgggtc 15993035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 223 - 316
Target Start/End: Original strand, 52130851 - 52130943
Alignment:
Q  223 ttttttggctccaatctatccacaccgttagatcattgtaattaggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattg 316  Q
    ||||| ||| |||||| ||||| |||||||||||||||||| |||||| |||||| |||||| || |||||||||||||||| |||||||||||    
T  52130851 tttttaggcgccaatcaatccagaccgttagatcattgtaagtaggggaggttagcacatcaaccattgatcaaatctcact-cttgaaaattg 52130943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 160 - 268
Target Start/End: Complemental strand, 19009728 - 19009621
Alignment:
Q  160 agttatcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaatctatccacaccgttagatcatt 259  Q
    |||||||||||| |||||||||||||||||| |   |||||||||| ||| | ||||||||||| ||||||||||| | |||||  |||||||||||| |    
T  19009728 agttatcctttatatctaatcctagcaaacaagcaaaccctaattgccaacctctaaacctact-ttttggctccattttatcctgaccgttagatcaat 19009630  T
Q  260 gtaattagg 268  Q
     ||||||||    
T  19009629 ctaattagg 19009621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 359 - 411
Target Start/End: Original strand, 52130972 - 52131024
Alignment:
Q  359 ttgttcaataccgatgcaaactctacagaaccccatgcttccctcttcatctc 411  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||| ||||    
T  52130972 ttgttcaataccgatgcaaactctacagtgccccatgcttccctcttcttctc 52131024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 52126885 - 52126957
Alignment:
Q  164 atcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaa 236  Q
    |||||||| |||||||||||||||||||| |||||||||||    |||||||| ||||  |||||||||||||    
T  52126885 atcctttatatctaatcctagcaaacatgcttaccctaatttcttaaccctaatcctaagtttttggctccaa 52126957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 50719204 - 50719236
Alignment:
Q  131 gacccgtgcggcgcacgggtcggcgttctagtt 163  Q
    |||||||||||||||||||||||||||||||||    
T  50719204 gacccgtgcggcgcacgggtcggcgttctagtt 50719236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 50793644 - 50793612
Alignment:
Q  131 gacccgtgcggcgcacgggtcggcgttctagtt 163  Q
    |||||||||||||||||||||||||||||||||    
T  50793644 gacccgtgcggcgcacgggtcggcgttctagtt 50793612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 112 - 151
Target Start/End: Complemental strand, 14171265 - 14171226
Alignment:
Q  112 aaattattttggctcataagacccgtgcggcgcacgggtc 151  Q
    |||| ||||| |||||||||||||||||||||||||||||    
T  14171265 aaatgattttagctcataagacccgtgcggcgcacgggtc 14171226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 14459308 - 14459257
Alignment:
Q  176 taatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttt 227  Q
    ||||||||||||||||| ||| |||||||  ||||||||||||||| |||||    
T  14459308 taatcctagcaaacatgcttaacctaatttccaaaccctaaacctatttttt 14459257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 241
Target Start/End: Original strand, 25612613 - 25612692
Alignment:
Q  163 tatcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctactt-ttttggctccaatctat 241  Q
    ||||||||| |||||||  | ||||||||| |||||||||||  | ||||||||||||| || |||||||||||| ||||    
T  25612613 tatcctttatatctaatggttgcaaacatgcttaccctaattccctaaccctaaacctaattgttttggctccaacctat 25612692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 162
Target Start/End: Original strand, 29157525 - 29157558
Alignment:
Q  129 aagacccgtgcggcgcacgggtcggcgttctagt 162  Q
    |||||||||||| |||||||||||||||||||||    
T  29157525 aagacccgtgcgccgcacgggtcggcgttctagt 29157558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 236
Target Start/End: Complemental strand, 44712615 - 44712542
Alignment:
Q  164 atcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacct-acttttttggctccaa 236  Q
    |||||||| || ||||||||||||||||||||| |||||||  |||||  ||| ||| | ||||||||||||||    
T  44712615 atcctttatatataatcctagcaaacatgtttatcctaattaccaaactttaatcctaatttttttggctccaa 44712542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 52311739 - 52311686
Alignment:
Q  162 ttatcctttacatctaatcctagcaaacatgtttaccctaattgtcaaacccta 215  Q
    |||||||||| |||||||| |||||||| ||  |||| ||||||||||||||||    
T  52311739 ttatcctttatatctaatcatagcaaacctgcataccataattgtcaaacccta 52311686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 268
Target Start/End: Complemental strand, 18996358 - 18996254
Alignment:
Q  164 atcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaatctatccacaccgttagatcattgtaa 263  Q
    |||||||| |||||||  | |||||||||   |||||||||  ||| | |||| |||||||||||||||||| | ||||   |||||||||||||| ||     
T  18996358 atcctttatatctaatgtttgcaaacatgcaaaccctaattcccaacctctaaccctacttttttggctccattttatcgtgaccgttagatcattttag 18996259  T
Q  264 ttagg 268  Q
    |||||    
T  18996258 ttagg 18996254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 268
Target Start/End: Complemental strand, 18998897 - 18998793
Alignment:
Q  164 atcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaatctatccacaccgttagatcattgtaa 263  Q
    |||||||| |||||||  | |||||||||   |||||||||  ||| | |||| |||||||||||||||||| | ||||   |||||||||||||| ||     
T  18998897 atcctttatatctaatgtttgcaaacatgcaaaccctaattcccaacctctaaccctacttttttggctccattttatcgtgaccgttagatcattttag 18998798  T
Q  264 ttagg 268  Q
    |||||    
T  18998797 ttagg 18998793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 151
Target Start/End: Original strand, 48763556 - 48763584
Alignment:
Q  123 gctcataagacccgtgcggcgcacgggtc 151  Q
    |||||||||||||||||||||||||||||    
T  48763556 gctcataagacccgtgcggcgcacgggtc 48763584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 157; Significance: 2e-83; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 207 - 411
Target Start/End: Complemental strand, 37362629 - 37362425
Alignment:
Q  207 caaaccctaaacctacttttttggctccaatctatccacaccgttagatcattgtaattaggggtggttagtacatcagccgttgatcaaatctcactcc 306  Q
    ||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||    
T  37362629 caaactctaaacctacttttttggctccaatctatccagatcgttagatcattgtaattaggagcggttagcacatcagccgttgatcaaatctcactcc 37362530  T
Q  307 ttgaaaattgacacacccacatagggaaacaaaacctcttcttctccattgtttgttcaataccgatgcaaactctacagaaccccatgcttccctcttc 406  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  37362529 ttgaaaattgacacacgcgcatagggaaacaaaacctcttcttctccattatttgttcaatactgatgcaaactctacagagccccatgcttccctcttc 37362430  T
Q  407 atctc 411  Q
     ||||    
T  37362429 ttctc 37362425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 168 - 322
Target Start/End: Original strand, 1971096 - 1971248
Alignment:
Q  168 tttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaatctatccacaccgttagatcattgtaattag 267  Q
    |||| |||||||||||||||||||| |||||||||||  ||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||    
T  1971096 tttatatctaatcctagcaaacatgcttaccctaatttccaaaccctaaatctacttttttggctccaatctatccagaccgttagatcattataattag 1971195  T
Q  268 gggtggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacac 322  Q
    ||| |||||| |||||||||||||||||||  |||||| ||||||||||| ||||    
T  1971196 gggaggttagcacatcagccgttgatcaaa--tcactctttgaaaattgatacac 1971248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 234 - 322
Target Start/End: Original strand, 7841360 - 7841448
Alignment:
Q  234 caatctatccacaccgttagatcattgtaattaggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacac 322  Q
    ||||| ||||| |||||||||||||||||| |||| |  |||||  |||||||||||||||||||||||||||||||||||||| ||||    
T  7841360 caatcaatccagaccgttagatcattgtaagtaggagctgttagcgcatcagccgttgatcaaatctcactccttgaaaattgaaacac 7841448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 349 - 406
Target Start/End: Original strand, 7841452 - 7841508
Alignment:
Q  349 tctccattgtttgttcaataccgatgcaaactctacagaaccccatgcttccctcttc 406  Q
    ||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7841452 tctcctttatttgttcaatacc-atgcaaactctacagaaccccatgcttccctcttc 7841508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 359 - 411
Target Start/End: Original strand, 1971308 - 1971360
Alignment:
Q  359 ttgttcaataccgatgcaaactctacagaaccccatgcttccctcttcatctc 411  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||| ||||    
T  1971308 ttgttcaataccaatgcaaactctacagagccccatgcttccctcttcttctc 1971360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 24759474 - 24759546
Alignment:
Q  164 atcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaa 236  Q
    |||||||| ||||||||||||||||||||||||||||||||    |||||||| ||||  |||||||||||||    
T  24759474 atcctttatatctaatcctagcaaacatgtttaccctaatttcttaaccctaatcctaagtttttggctccaa 24759546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 8170782 - 8170821
Alignment:
Q  4 tcagagatagaatctttatttaacatgtgttgatttataa 43  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  8170782 tcagagatagaatctttatttaacatgtgttgatttataa 8170821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 162
Target Start/End: Original strand, 30063314 - 30063408
Alignment:
Q  68 attttttaaattccatttcaacatatttcgttttattgtttatcaaattattttggctcataagacccgtgcggcgcacgggtcggcgttctagt 162  Q
    |||||| | ||||||||  || |||||| |||||||||| |||||||||||||  | | || ||||||||| |||||| ||||||||||||||||    
T  30063314 atttttcagattccattctaatatattttgttttattgtgtatcaaattatttcagtttatgagacccgtgtggcgcatgggtcggcgttctagt 30063408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 163
Target Start/End: Complemental strand, 39262814 - 39262778
Alignment:
Q  127 ataagacccgtgcggcgcacgggtcggcgttctagtt 163  Q
    |||||||||||||||||||||||||||||||||||||    
T  39262814 ataagacccgtgcggcgcacgggtcggcgttctagtt 39262778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 11503204 - 11503268
Alignment:
Q  164 atcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctactttttt 228  Q
    |||||| | ||||||||||| ||||||| |||| ||||||||  |||||||||||||| ||||||    
T  11503204 atccttcatatctaatcctaccaaacatatttatcctaattgcgaaaccctaaacctaatttttt 11503268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 163
Target Start/End: Complemental strand, 48844176 - 48844140
Alignment:
Q  127 ataagacccgtgcggcgcacgggtcggcgttctagtt 163  Q
    |||||||||||||| ||||||||||||||||||||||    
T  48844176 ataagacccgtgcgacgcacgggtcggcgttctagtt 48844140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 131 - 162
Target Start/End: Original strand, 2440075 - 2440106
Alignment:
Q  131 gacccgtgcggcgcacgggtcggcgttctagt 162  Q
    ||||||||||||||||||||||||||||||||    
T  2440075 gacccgtgcggcgcacgggtcggcgttctagt 2440106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 162 - 236
Target Start/End: Original strand, 43903418 - 43903493
Alignment:
Q  162 ttatcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacct-acttttttggctccaa 236  Q
    |||||||||| |||||||  |||||||||||  |||||||||||  ||||||||||| | | ||||||||||||||    
T  43903418 ttatcctttatatctaatgttagcaaacatgcctaccctaattgcaaaaccctaaacttaatttttttggctccaa 43903493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 150
Target Start/End: Original strand, 40725705 - 40725743
Alignment:
Q  112 aaattattttggctcataagacccgtgcggcgcacgggt 150  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  40725705 aaatgattttagctcataagacccgtgcggcgcacgggt 40725743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 268
Target Start/End: Original strand, 45124784 - 45124888
Alignment:
Q  164 atcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaatctatccacaccgttagatcattgtaa 263  Q
    |||||||| |||||||  | |||||||||   |||||||||  ||| | |||| |||||||||||||||||| | ||||   |||||||||||||| ||     
T  45124784 atcctttatatctaatgtttgcaaacatgcaaaccctaattcccaacctctaaccctacttttttggctccattttatcgtgaccgttagatcattttag 45124883  T
Q  264 ttagg 268  Q
    |||||    
T  45124884 ttagg 45124888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 7e-62; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 6 - 163
Target Start/End: Original strand, 2304176 - 2304341
Alignment:
Q  6 agagatagaatctttatttaacatgtgttgatttataa--------ttactcaacctccttcttatgctgattttttaaattccatttcaacatatttcg 97  Q
    ||||||||||||||||||||||||||||||||||||||        |||||  ||||||||||||||||||||||||||||||||||| |||||||||||    
T  2304176 agagatagaatctttatttaacatgtgttgatttataaatagtaatttacttgacctccttcttatgctgattttttaaattccattttaacatatttcg 2304275  T
Q  98 ttttattgtttatcaaattattttggctcataagacccgtgcggcgcacgggtcggcgttctagtt 163  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2304276 ttttattgtttatcaaattattttggctcataagacccatgcggcgcacgggtcggcgttctagtt 2304341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 164 - 341
Target Start/End: Complemental strand, 14210491 - 14210314
Alignment:
Q  164 atcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaatctatccacaccgttagatcattgtaa 263  Q
    |||||||| |||||||||||||||||||| |||||||||||  |||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  14210491 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatcattgtaa 14210392  T
Q  264 ttaggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacacccacatagggaaacaaaac 341  Q
    ||||||| |||||| |||| |||| |||||||||||||| |||||||||||||| |||| | |||||| |||||||||    
T  14210391 ttaggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaac 14210314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 164 - 341
Target Start/End: Complemental strand, 14211460 - 14211283
Alignment:
Q  164 atcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaatctatccacaccgttagatcattgtaa 263  Q
    |||||||| |||||||||||||||||||| |||||||||||  |||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  14211460 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatcattgtaa 14211361  T
Q  264 ttaggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacacccacatagggaaacaaaac 341  Q
    ||||||| |||||| |||| |||| |||||||||||||| |||||||||||||| |||| | |||||| |||||||||    
T  14211360 ttaggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaac 14211283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 164 - 341
Target Start/End: Complemental strand, 14212411 - 14212234
Alignment:
Q  164 atcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaatctatccacaccgttagatcattgtaa 263  Q
    |||||||| |||||||||||||||||||| |||||||||||  |||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  14212411 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatcattgtaa 14212312  T
Q  264 ttaggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacacccacatagggaaacaaaac 341  Q
    ||||||| |||||| |||| |||| |||||||||||||| |||||||||||||| |||| | |||||| |||||||||    
T  14212311 ttaggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaac 14212234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 164 - 341
Target Start/End: Complemental strand, 14214348 - 14214171
Alignment:
Q  164 atcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaatctatccacaccgttagatcattgtaa 263  Q
    |||||||| |||||||||||||||||||| |||||||||||  |||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  14214348 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatcattgtaa 14214249  T
Q  264 ttaggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacacccacatagggaaacaaaac 341  Q
    ||||||| |||||| |||| |||| |||||||||||||| |||||||||||||| |||| | |||||| |||||||||    
T  14214248 ttaggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaac 14214171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 164 - 341
Target Start/End: Complemental strand, 14215317 - 14215140
Alignment:
Q  164 atcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaatctatccacaccgttagatcattgtaa 263  Q
    |||||||| |||||||||||||||||||| |||||||||||  |||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  14215317 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatcattgtaa 14215218  T
Q  264 ttaggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacacccacatagggaaacaaaac 341  Q
    ||||||| |||||| |||| |||| |||||||||||||| |||||||||||||| |||| | |||||| |||||||||    
T  14215217 ttaggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaac 14215140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 164 - 341
Target Start/End: Complemental strand, 14218188 - 14218011
Alignment:
Q  164 atcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaatctatccacaccgttagatcattgtaa 263  Q
    |||||||| |||||||||||||||||||| |||||||||||  |||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  14218188 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatcattgtaa 14218089  T
Q  264 ttaggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacacccacatagggaaacaaaac 341  Q
    ||||||| |||||| |||| |||| |||||||||||||| |||||||||||||| |||| | |||||| |||||||||    
T  14218088 ttaggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaac 14218011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 164 - 341
Target Start/End: Complemental strand, 14220127 - 14219950
Alignment:
Q  164 atcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaatctatccacaccgttagatcattgtaa 263  Q
    |||||||| |||||||||||||||||||| |||||||||||  |||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  14220127 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatcattgtaa 14220028  T
Q  264 ttaggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacacccacatagggaaacaaaac 341  Q
    ||||||| |||||| |||| |||| |||||||||||||| |||||||||||||| |||| | |||||| |||||||||    
T  14220027 ttaggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaac 14219950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 164 - 341
Target Start/End: Complemental strand, 14221078 - 14220901
Alignment:
Q  164 atcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaatctatccacaccgttagatcattgtaa 263  Q
    |||||||| |||||||||||||||||||| |||||||||||  |||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  14221078 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatcattgtaa 14220979  T
Q  264 ttaggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacacccacatagggaaacaaaac 341  Q
    ||||||| |||||| |||| |||| |||||||||||||| |||||||||||||| |||| | |||||| |||||||||    
T  14220978 ttaggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaac 14220901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 164 - 341
Target Start/End: Complemental strand, 14209540 - 14209363
Alignment:
Q  164 atcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaatctatccacaccgttagatcattgtaa 263  Q
    |||||||| |||||||| ||||||||||| |||||||||||  |||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  14209540 atcctttatatctaatcgtagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatcattgtaa 14209441  T
Q  264 ttaggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacacccacatagggaaacaaaac 341  Q
    ||||||| |||||| |||| |||| |||||||||||||| |||||||||||||| |||| | |||||| |||||||||    
T  14209440 ttaggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaac 14209363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 164 - 341
Target Start/End: Complemental strand, 14213380 - 14213203
Alignment:
Q  164 atcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaatctatccacaccgttagatcattgtaa 263  Q
    |||||||| |||||||||||||||||||| |||||||||||  |||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  14213380 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatcattgtaa 14213281  T
Q  264 ttaggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacacccacatagggaaacaaaac 341  Q
    ||||||| |||||| |||| |||| |||||||||||||| |||||||||||||| |||  | |||||| |||||||||    
T  14213280 ttaggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacatgcgcataggaaaacaaaac 14213203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 164 - 341
Target Start/End: Complemental strand, 14216286 - 14216109
Alignment:
Q  164 atcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaatctatccacaccgttagatcattgtaa 263  Q
    |||||||| || ||||||||||||||||| |||||||||||  |||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  14216286 atcctttatatataatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatcattgtaa 14216187  T
Q  264 ttaggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacacccacatagggaaacaaaac 341  Q
    ||||||| |||||| |||| |||| |||||||||||||| |||||||||||||| |||| | |||||| |||||||||    
T  14216186 ttaggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaac 14216109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 164 - 341
Target Start/End: Complemental strand, 14217237 - 14217060
Alignment:
Q  164 atcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaatctatccacaccgttagatcattgtaa 263  Q
    |||||||| |||||||| ||||||||||| |||||||||||  |||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  14217237 atcctttatatctaatcgtagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatcattgtaa 14217138  T
Q  264 ttaggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacacccacatagggaaacaaaac 341  Q
    ||||||| |||||| |||| |||| |||||||||||||| |||||||||||||| |||| | |||||| |||||||||    
T  14217137 ttaggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaac 14217060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 164 - 341
Target Start/End: Complemental strand, 14219158 - 14218981
Alignment:
Q  164 atcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaatctatccacaccgttagatcattgtaa 263  Q
    |||||||| |||||||||||||||||||| |||||||||||  |||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  14219158 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatcattgtaa 14219059  T
Q  264 ttaggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacacccacatagggaaacaaaac 341  Q
    ||||||| |||||| |||| |||| |||||||||||||| |||||||||||||| |||  | |||||| |||||||||    
T  14219058 ttaggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacatgcgcataggaaaacaaaac 14218981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 164 - 341
Target Start/End: Complemental strand, 14222047 - 14221870
Alignment:
Q  164 atcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaatctatccacaccgttagatcattgtaa 263  Q
    |||||||| |||||||||||||||||||| |||||||||||  |||||||| ||||||||||||||||||||| ||||||| |||||||||||||| |||    
T  14222047 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatcattttaa 14221948  T
Q  264 ttaggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacacccacatagggaaacaaaac 341  Q
    ||||||| |||||| |||| |||| |||||||||||||| |||||||||||||| |||| | |||||| |||||||||    
T  14221947 ttaggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaac 14221870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 164 - 341
Target Start/End: Complemental strand, 14223016 - 14222839
Alignment:
Q  164 atcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaatctatccacaccgttagatcattgtaa 263  Q
    |||||||| |||||||||||||||||||| |||||||||||  |||||||| ||||||||||||||||||||| ||||||| ||| ||||||||||||||    
T  14223016 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccattagatcattgtaa 14222917  T
Q  264 ttaggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacacccacatagggaaacaaaac 341  Q
    ||||||| |||||| |||| |||| |||||||||||||| |||||||||||||| |||| | |||||| |||||||||    
T  14222916 ttaggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaac 14222839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 92 - 163
Target Start/End: Complemental strand, 16030659 - 16030588
Alignment:
Q  92 atttcgttttattgtttatcaaattattttggctcataagacccgtgcggcgcacgggtcggcgttctagtt 163  Q
    ||||||||||||||| ||||||||||||   ||||||||||||||||||||||||||||||| |||||||||    
T  16030659 atttcgttttattgtgtatcaaattattcgagctcataagacccgtgcggcgcacgggtcggtgttctagtt 16030588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 233 - 316
Target Start/End: Original strand, 41810243 - 41810326
Alignment:
Q  233 ccaatctatccacaccgttagatcattgtaattaggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattg 316  Q
    |||||| ||||| |||||||||||||||||| |||||| |||||| | |||| || ||||||||||||||||||||||||||||    
T  41810243 ccaatcaatccagaccgttagatcattgtaagtaggggcggttagcatatcaaccattgatcaaatctcactccttgaaaattg 41810326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 164 - 268
Target Start/End: Complemental strand, 1069045 - 1068941
Alignment:
Q  164 atcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaatctatccacaccgttagatcattgtaa 263  Q
    |||||||| |||||||  | |||||||||   |||||||||| ||| | |||| |||||||||||||||||| | |||||  || |||||||||||||||    
T  1069045 atcctttatatctaatggttgcaaacatgcaaaccctaattgccaacctctaaccctacttttttggctccattttatcctgactgttagatcattgtaa 1068946  T
Q  264 ttagg 268  Q
    |||||    
T  1068945 ttagg 1068941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 268
Target Start/End: Original strand, 8540893 - 8540998
Alignment:
Q  163 tatcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaatctatccacaccgttagatcattgta 262  Q
    ||||||||| |||||||  | |||||||||   |||||||||| ||| | |||| | |||||||||||||||| | |||||   ||||||||||||||||    
T  8540893 tatcctttatatctaatggttgcaaacatgcaaaccctaattgccaacctctaaccttacttttttggctccattttatcctggccgttagatcattgta 8540992  T
Q  263 attagg 268  Q
    ||||||    
T  8540993 attagg 8540998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 68 - 163
Target Start/End: Original strand, 33315872 - 33315967
Alignment:
Q  68 attttttaaattccatttcaacatatttcgttttattgtttatcaaattattttggctcataagacccgtgcggcgcacgggtcggcgttctagtt 163  Q
    |||||||||||| ||||  |  ||||||| ||||| | | ||||||||||||   ||||||||||||||||||||| || | ||||||||||||||    
T  33315872 attttttaaatttcattctacaatatttcattttactatatatcaaattattccagctcataagacccgtgcggcgaacagatcggcgttctagtt 33315967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 411
Target Start/End: Original strand, 41810365 - 41810426
Alignment:
Q  349 tctccattgtttgttcaataccgatgcaaactctacagaaccccatgcttccctcttcatctc 411  Q
    |||||||| || |||||||||| |||||||||||||||  |||||||||||||||||| ||||    
T  41810365 tctccattatt-gttcaatacccatgcaaactctacagtgccccatgcttccctcttcttctc 41810426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 14586910 - 14586846
Alignment:
Q  164 atcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctactttttt 228  Q
    |||||||| ||||||||||||||||||||   | ||||||||   ||||||||||||||||||||    
T  14586910 atcctttatatctaatcctagcaaacatgcaaatcctaattgcataaccctaaacctactttttt 14586846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 221
Target Start/End: Complemental strand, 37619041 - 37618988
Alignment:
Q  167 ctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaaccta 221  Q
    ||||| |||||||||||||||||||| |||||||||||  | |||||||||||||    
T  37619041 ctttatatctaatcctagcaaacatgcttaccctaatt-cctaaccctaaaccta 37618988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 30176040 - 30176112
Alignment:
Q  164 atcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaa 236  Q
    |||||||| || |||||||||||   ||| ||||||||||| || |||||||| ||||  |||||||||||||    
T  30176040 atcctttatatttaatcctagcagtaatgcttaccctaattttctaaccctaatcctaagtttttggctccaa 30176112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 1e-57; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 164 - 341
Target Start/End: Complemental strand, 40981666 - 40981489
Alignment:
Q  164 atcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaatctatccacaccgttagatcattgtaa 263  Q
    |||||||| |||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  40981666 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaaccctaaacctacttttttggctccaatctatccagaccgttagatcattgtaa 40981567  T
Q  264 ttaggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacacccacatagggaaacaaaac 341  Q
    |||| || |||||| || |||||||||||||||| ||||||| || |||||||| |||| | ||||||||||| ||||    
T  40981566 ttagaggaggttagcacttcagccgttgatcaaaactcactctttaaaaattgatacacgcgcatagggaaaccaaac 40981489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 143 - 341
Target Start/End: Original strand, 50290411 - 50290610
Alignment:
Q  143 gcacgggtcggcgttctagt-tatcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaatctat 241  Q
    ||||||||||  | |||||| ||||||||| ||||||||||| |||||||| ||| ||||| |  ||||||||||||||| ||||||||||||||| |||    
T  50290411 gcacgggtcgatggtctagtatatcctttatatctaatcctaacaaacatgcttaacctaaattccaaaccctaaacctatttttttggctccaatttat 50290510  T
Q  242 ccacaccgttagatcattgtaattaggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacacccacatagggaaacaaaac 341  Q
    ||| |||||||||||||| ||||||| || |||||| ||||||| ||||||| ||||||||||||||||||||||| | || | ||||||||||||||||    
T  50290511 ccagaccgttagatcattataattagaggaggttagcacatcagtcgttgataaaatctcactccttgaaaattgatagacgctcatagggaaacaaaac 50290610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 164 - 268
Target Start/End: Original strand, 29836239 - 29836343
Alignment:
Q  164 atcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaatctatccacaccgttagatcattgtaa 263  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||| | |||    
T  29836239 atcctttatatctaatcctagcaaacatgtttaccctaattgccaaaccctaaacctacttttttggctccaatctatcctgaccgttagatcaatctaa 29836338  T
Q  264 ttagg 268  Q
    |||||    
T  29836339 ttagg 29836343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 68 - 162
Target Start/End: Complemental strand, 41862847 - 41862753
Alignment:
Q  68 attttttaaattccatttcaacatatttcgttttattgtttatcaaattattttggctcataagacccgtgcggcgcacgggtcggcgttctagt 162  Q
    |||||||||||| |||| ||||||||||| ||||||||| ||||||||||||| | |||||| ||||| ||||| ||||||||| ||||||||||    
T  41862847 attttttaaatttcattccaacatatttcattttattgtgtatcaaattatttcgactcatacgacccatgcggtgcacgggtcagcgttctagt 41862753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 51382581 - 51382509
Alignment:
Q  90 atatttcgttttattgtttatcaaattattttggctcataagacccgtgcggcgcacgggtcggcgttctagt 162  Q
    |||||||||||||| || ||||||||||||  |||||||||||||||||||||||| ||||||||||||||||    
T  51382581 atatttcgttttatcgtgtatcaaattattccggctcataagacccgtgcggcgcatgggtcggcgttctagt 51382509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 196 - 313
Target Start/End: Complemental strand, 27843759 - 27843642
Alignment:
Q  196 accctaattgtcaaaccctaaacctacttttttggctccaatctatccacaccgttagatcattgtaattaggggtggttagtacatcagccgtt-gatc 294  Q
    |||||||||| ||| | | || |||||||||||||||||| | |||||  |||||||||||||||||||||  |  | |||| |||||||||||| ||||    
T  27843759 accctaattgccaacctccaaccctacttttttggctccattttatcctgaccgttagatcattgtaatta-agaagattagcacatcagccgttagatc 27843661  T
Q  295 aaatctcactccttgaaaa 313  Q
    ||||| |||||||||||||    
T  27843660 aaatcacactccttgaaaa 27843642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 223 - 316
Target Start/End: Original strand, 14184747 - 14184840
Alignment:
Q  223 ttttttggctccaatctatccacaccgttagatcattgtaattaggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattg 316  Q
    ||||| ||| |||||| ||||| || ||||||||||| ||| |||||| |||||| ||||||| | |||||||||| ||||||||| |||||||    
T  14184747 tttttaggcgccaatcaatccaaactgttagatcattataagtaggggcggttagcacatcagtcattgatcaaatgtcactccttaaaaattg 14184840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 257
Target Start/End: Complemental strand, 38240269 - 38240176
Alignment:
Q  164 atcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaatctatccacaccgttagatca 257  Q
    |||||||| ||||||||||||||   |||   |||||||||||||| | |||| |||||||||||||||||| | |||||  ||||||||||||    
T  38240269 atcctttatatctaatcctagcagcaatgcaaaccctaattgtcaacctctaaccctacttttttggctccattttatcctaaccgttagatca 38240176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 267
Target Start/End: Original strand, 6919549 - 6919653
Alignment:
Q  163 tatcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaatctatccacaccgttagatcattgta 262  Q
    ||||||||| ||||||||||||||   |||   || ||||||| ||| | |||| |||||||||||||||||| | ||| |  |||||||||||||||||    
T  6919549 tatcctttatatctaatcctagcagcaatgcaaactctaattgccaacctctaaccctacttttttggctccattttattctgaccgttagatcattgta 6919648  T
Q  263 attag 267  Q
    |||||    
T  6919649 attag 6919653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 411
Target Start/End: Complemental strand, 7607953 - 7607901
Alignment:
Q  359 ttgttcaataccgatgcaaactctacagaaccccatgcttccctcttcatctc 411  Q
    |||||||||||| |||||||||||||||  |||||||||||||||||| ||||    
T  7607953 ttgttcaatacccatgcaaactctacagtgccccatgcttccctcttcttctc 7607901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 411
Target Start/End: Complemental strand, 31770941 - 31770889
Alignment:
Q  359 ttgttcaataccgatgcaaactctacagaaccccatgcttccctcttcatctc 411  Q
    |||||||||||| |||||||||||||||  |||||||||||||||||| ||||    
T  31770941 ttgttcaatacccatgcaaactctacagtgccccatgcttccctcttcttctc 31770889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 50860118 - 50860175
Alignment:
Q  164 atcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaaccta 221  Q
    |||||||| ||||||||||||||||| || ||||||||||||  ||||| ||||||||    
T  50860118 atcctttatatctaatcctagcaaacgtgcttaccctaattgctaaaccttaaaccta 50860175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 163
Target Start/End: Original strand, 38509035 - 38509069
Alignment:
Q  129 aagacccgtgcggcgcacgggtcggcgttctagtt 163  Q
    |||||||||||||||||||||| ||||||||||||    
T  38509035 aagacccgtgcggcgcacgggttggcgttctagtt 38509069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 162
Target Start/End: Original strand, 39183239 - 39183272
Alignment:
Q  129 aagacccgtgcggcgcacgggtcggcgttctagt 162  Q
    |||||||||||||||||||| |||||||||||||    
T  39183239 aagacccgtgcggcgcacggatcggcgttctagt 39183272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 3e-55; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 164 - 341
Target Start/End: Complemental strand, 31409776 - 31409599
Alignment:
Q  164 atcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaatctatccacaccgttagatcattgtaa 263  Q
    |||||||| || ||||||||||||||||| |||||||||||  |||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  31409776 atcctttatatataatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatcattgtaa 31409677  T
Q  264 ttaggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacacccacatagggaaacaaaac 341  Q
    ||||||| |||||| |||| |||| |||||||||||||| |||||||||||||| |||| | |||||| |||||||||    
T  31409676 ttaggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaac 31409599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 26449092 - 26449165
Alignment:
Q  163 tatcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaa 236  Q
    ||||||||| |||||||||||||||||||| |||||||||||| ||||||||||  ||| ||||||||||||||    
T  26449092 tatcctttatatctaatcctagcaaacatgcttaccctaattgccaaaccctaattctaattttttggctccaa 26449165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 97 - 162
Target Start/End: Original strand, 6673892 - 6673957
Alignment:
Q  97 gttttattgtttatcaaattattttggctcataagacccgtgcggcgcacgggtcggcgttctagt 162  Q
    |||||||||| || ||||||||| | |||||||||||||||||||||||||||||||| |||||||    
T  6673892 gttttattgtgtaccaaattattcttgctcataagacccgtgcggcgcacgggtcggccttctagt 6673957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 163 - 221
Target Start/End: Original strand, 4768477 - 4768535
Alignment:
Q  163 tatcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaaccta 221  Q
    ||||||||| |||||||| ||||||||||| ||| ||||||||||||||||||||||||    
T  4768477 tatcctttatatctaatcttagcaaacatgcttatcctaattgtcaaaccctaaaccta 4768535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 236
Target Start/End: Complemental strand, 22145718 - 22145644
Alignment:
Q  162 ttatcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaa 236  Q
    |||||||||| ||||||||||||||   ||| |||||||||||  | |||||||| ||||  |||||||||||||    
T  22145718 ttatcctttatatctaatcctagcagtaatgcttaccctaatttcctaaccctaatcctaagtttttggctccaa 22145644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 165
Target Start/End: Original strand, 27534974 - 27535008
Alignment:
Q  131 gacccgtgcggcgcacgggtcggcgttctagttat 165  Q
    ||||||||||||||||||||||||||||| |||||    
T  27534974 gacccgtgcggcgcacgggtcggcgttctggttat 27535008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 162
Target Start/End: Original strand, 16970265 - 16970298
Alignment:
Q  129 aagacccgtgcggcgcacgggtcggcgttctagt 162  Q
    |||||||||||| |||||||||||||||||||||    
T  16970265 aagacccgtgcgacgcacgggtcggcgttctagt 16970298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 162
Target Start/End: Original strand, 28003478 - 28003511
Alignment:
Q  129 aagacccgtgcggcgcacgggtcggcgttctagt 162  Q
    ||||||||||||||||| ||||||||||||||||    
T  28003478 aagacccgtgcggcgcaagggtcggcgttctagt 28003511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 38403354 - 38403427
Alignment:
Q  163 tatcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaa 236  Q
    ||||||||| ||||||||||||||   |||   |||||| ||| |||||||||| |||| ||||||||||||||    
T  38403354 tatcctttatatctaatcctagcagcaatgcaaaccctatttgccaaaccctaatcctaattttttggctccaa 38403427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 162
Target Start/End: Complemental strand, 38993424 - 38993391
Alignment:
Q  129 aagacccgtgcggcgcacgggtcggcgttctagt 162  Q
    ||||||||||||||||||||||| ||||||||||    
T  38993424 aagacccgtgcggcgcacgggtcagcgttctagt 38993391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 163
Target Start/End: Original strand, 32286934 - 32286970
Alignment:
Q  127 ataagacccgtgcggcgcacgggtcggcgttctagtt 163  Q
    ||||||||||||||||||||||||||||  |||||||    
T  32286934 ataagacccgtgcggcgcacgggtcggctatctagtt 32286970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 8e-37; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 66 - 160
Target Start/End: Original strand, 6702055 - 6702149
Alignment:
Q  66 tgattttttaaattccatttcaacatatttcgttttattgtttatcaaattattttggctcataagacccgtgcggcgcacgggtcggcgttcta 160  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  6702055 tgattttttaaattccattccaacatatttcgttttattgtgtatcaaattattctggctcataagacccgtgcggtgcacgggtcggcgttcta 6702149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 40946710 - 40946782
Alignment:
Q  164 atcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaa 236  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||||||||| | || ||||||||||||||    
T  40946710 atcctttatatctaatcctagcaaacatgtttaccctaattgccaaaccctaatcttaattttttggctccaa 40946782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 4077837 - 4077910
Alignment:
Q  163 tatcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaa 236  Q
    ||||||||| |||||||||||||||||||| ||| |||||||| |||||||||| |||  ||||||||||||||    
T  4077837 tatcctttatatctaatcctagcaaacatgcttatcctaattgccaaaccctaatccttattttttggctccaa 4077910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 16352193 - 16352130
Alignment:
Q  173 atctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaa 236  Q
    |||||||||||||||||||| |||||||||||| |||||||||| |||  ||||||||||||||    
T  16352193 atctaatcctagcaaacatgcttaccctaattgccaaaccctaatccttattttttggctccaa 16352130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 68 - 162
Target Start/End: Complemental strand, 11298565 - 11298471
Alignment:
Q  68 attttttaaattccatttcaacatatttcgttttattgtttatcaaattattttggctcataagacccgtgcggcgcacgggtcggcgttctagt 162  Q
    ||||||||||||||||| |   ||||||| ||||||| | ||||||||| ||   ||||||||||||| | ||||||||||||||||||||||||    
T  11298565 attttttaaattccattcctctatatttcattttattatgtatcaaattgttccagctcataagacccatacggcgcacgggtcggcgttctagt 11298471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 68 - 163
Target Start/End: Original strand, 37340322 - 37340417
Alignment:
Q  68 attttttaaattccatttcaacatatttcgttttattgtttatcaaattattttggctcataagacccgtgcggcgcacgggtcggcgttctagtt 163  Q
    |||||||||||| |||| ||  ||||||| ||||||| | |||||| || ||   ||| ||||||||||||||| |||||||||||||||||||||    
T  37340322 attttttaaatttcattccactatatttcattttattatgtatcaatttgttccagctaataagacccgtgcggggcacgggtcggcgttctagtt 37340417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 40162228 - 40162276
Alignment:
Q  173 atctaatcctagcaaacatgtttaccctaattgtcaaaccctaaaccta 221  Q
    ||||||||||| |||||||| ||||||||||||| ||| ||||||||||    
T  40162228 atctaatcctaacaaacatgcttaccctaattgtaaaatcctaaaccta 40162276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 162
Target Start/End: Original strand, 26113650 - 26113683
Alignment:
Q  129 aagacccgtgcggcgcacgggtcggcgttctagt 162  Q
    ||||||||||||||||||||||| ||||||||||    
T  26113650 aagacccgtgcggcgcacgggtcagcgttctagt 26113683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 164 - 317
Target Start/End: Complemental strand, 29729421 - 29729269
Alignment:
Q  164 atcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaatctatccacaccgttagatcattgtaa 263  Q
    |||||||| || |||||| |||||  ||| |||||||||||| |||||| |||||||| |||||||||||||||| ||||| ||| ||||||||||||||    
T  29729421 atcctttatatttaatccaagcaat-atgcttaccctaattgccaaaccttaaacctaattttttggctccaatcaatccagaccattagatcattgtaa 29729323  T
Q  264 ttaggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattga 317  Q
    ||||| | |||||  |||||| ||||||||||||||||||||| ||||||||||    
T  29729322 ttaggagcggttaacacatcaaccgttgatcaaatctcactccatgaaaattga 29729269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 163 - 268
Target Start/End: Original strand, 16395558 - 16395663
Alignment:
Q  163 tatcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaatctatccacaccgttagatcattgta 262  Q
    ||||||||| |||||||  | |||||||||   |||||||||||||| | |||| |||||||||||||||||| | |||||  |||||||||||||||||    
T  16395558 tatcctttatatctaatggttgcaaacatgcaaaccctaattgtcaacctctaaccctacttttttggctccattttatcctgaccgttagatcattgta 16395657  T
Q  263 attagg 268  Q
    ||||||    
T  16395658 attagg 16395663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 98 - 163
Target Start/End: Complemental strand, 45239425 - 45239360
Alignment:
Q  98 ttttattgtttatcaaattattttggctcataagacccgtgcggcgcacgggtcggcgttctagtt 163  Q
    ||||||||| |||||| |||||  ||||||||||||||||||||||||||||||||||||||||||    
T  45239425 ttttattgtgtatcaatttattccggctcataagacccgtgcggcgcacgggtcggcgttctagtt 45239360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 38681136 - 38681209
Alignment:
Q  163 tatcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaa 236  Q
    ||||||||| |||||||||||||||||||| |||||||| |||  ||||||||| |||| ||||||||||||||    
T  38681136 tatcctttatatctaatcctagcaaacatgcttaccctatttgctaaaccctaatcctaattttttggctccaa 38681209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 26955412 - 26955484
Alignment:
Q  164 atcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaa 236  Q
    |||||||| ||||||| ||||||||||||||||||||||||| |||||||||| | || ||||||| ||||||    
T  26955412 atcctttatatctaattctagcaaacatgtttaccctaattgccaaaccctaatcttaattttttgactccaa 26955484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 94 - 162
Target Start/End: Original strand, 42319906 - 42319974
Alignment:
Q  94 ttcgttttattgtttatcaaattattttggctcataagacccgtgcggcgcacgggtcggcgttctagt 162  Q
    ||||||||||||| ||||||||||||  ||||||||||||  |||||||||||||||| ||||||||||    
T  42319906 ttcgttttattgtgtatcaaattattccggctcataagacttgtgcggcgcacgggtccgcgttctagt 42319974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 235 - 306
Target Start/End: Original strand, 19962134 - 19962204
Alignment:
Q  235 aatctatccacaccgttagatcattgtaattaggggtggttagtacatcagccgttgatcaaatctcactcc 306  Q
    |||| ||||| |||||||||||||||||||||||| |  |||||| ||||||||||||||||||||||||||    
T  19962134 aatcaatccagaccgttagatcattgtaattaggg-taattagtatatcagccgttgatcaaatctcactcc 19962204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 96 - 162
Target Start/End: Original strand, 38684834 - 38684900
Alignment:
Q  96 cgttttattgtttatcaaattattttggctcataagacccgtgcggcgcacgggtcggcgttctagt 162  Q
    |||||||||| | |||||| |||||  ||||||||||||||||||||||||||||||||| ||||||    
T  38684834 cgttttattgataatcaaaatatttcagctcataagacccgtgcggcgcacgggtcggcgatctagt 38684900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 162 - 313
Target Start/End: Original strand, 765506 - 765657
Alignment:
Q  162 ttatcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaatctatccacaccgttagatcattgt 261  Q
    |||||||||| || ||||| |||||||||||   ||||| |||| ||| | |||| |||||||||||||||||| | |||||  | ||||||||| ||||    
T  765506 ttatcctttatatttaatcgtagcaaacatgcaaaccctgattgccaacctctaaccctacttttttggctccattttatcctgatcgttagatccttgt 765605  T
Q  262 aattaggggtggttagtacatcagccgtt-gatcaaatctcactccttgaaaa 313  Q
    ||||| ||  | |||| |||||||||||| || |||||| ||||| |||||||    
T  765606 aatta-ggaagattagcacatcagccgttagaccaaatcacactctttgaaaa 765657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 5240967 - 5240911
Alignment:
Q  108 tatcaaattattttggctcataagacccgtgcggcgcacgggtcggcgttctagtta 164  Q
    |||||||||||| ||||||||||||||||||||| |||||||||| || ||||||||    
T  5240967 tatcaaattattatggctcataagacccgtgcggtgcacgggtcgacgatctagtta 5240911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 92 - 163
Target Start/End: Complemental strand, 18622862 - 18622791
Alignment:
Q  92 atttcgttttattgtttatcaaattattttggctcataagacccgtgcggcgcacgggtcggcgttctagtt 163  Q
    ||||||||||||||||| |||||||||||| |||||||| ||| |||  | |||| ||||| ||||||||||    
T  18622862 atttcgttttattgtttgtcaaattatttttgctcataaaacctgtgtagggcacaggtcgccgttctagtt 18622791  T

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Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 162
Target Start/End: Original strand, 34310287 - 34310378
Alignment:
Q  71 ttttaaattccatttcaacatatttcgttttattgtttatcaaattattttggctcataagacccgtgcggcgcacgggtcggcgttctagt 162  Q
    |||||| ||||||| ||| |||||  |||||| |   ||||||| |||||  ||||||||||||||||||||||||||||||| | ||||||    
T  34310287 ttttaagttccattccaaaatattatgttttacttagtatcaaaatatttcagctcataagacccgtgcggcgcacgggtcggagatctagt 34310378  T

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Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 173 - 236
Target Start/End: Original strand, 38682400 - 38682462
Alignment:
Q  173 atctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaa 236  Q
    |||||||||||||||||||| ||||||| ||||  ||||||||| |||| ||||||||||||||    
T  38682400 atctaatcctagcaaacatgcttaccct-attgctaaaccctaatcctaattttttggctccaa 38682462  T

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Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 165
Target Start/End: Complemental strand, 43418240 - 43418197
Alignment:
Q  122 ggctcataagacccgtgcggcgcacgggtcggcgttctagttat 165  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||    
T  43418240 ggctcattagacctgtgcggcgcacgggtcggcgttctagttat 43418197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 236
Target Start/End: Original strand, 8022722 - 8022796
Alignment:
Q  162 ttatcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaa 236  Q
    |||||||||| ||||||||||||||   |||||||||||||||  | |||||||| ||||  |||||||||||||    
T  8022722 ttatcctttatatctaatcctagcagtaatgtttaccctaatttcctaaccctaatcctaagtttttggctccaa 8022796  T

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Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 268
Target Start/End: Complemental strand, 40173379 - 40173273
Alignment:
Q  162 ttatcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaatctatccacaccgttagatcattgt 261  Q
    ||||| |||| |||||||  | |||||||||   |||||||||| ||| | |||| |||| ||||||||||||| | |||||   |||||||||||||||    
T  40173379 ttatcttttatatctaatggttgcaaacatgcaaaccctaattgccaacctctaaccctatttttttggctccattttatcctggccgttagatcattgt 40173280  T
Q  262 aattagg 268  Q
    |||||||    
T  40173279 aattagg 40173273  T

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Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 131 - 164
Target Start/End: Complemental strand, 9885399 - 9885366
Alignment:
Q  131 gacccgtgcggcgcacgggtcggcgttctagtta 164  Q
    ||||||||||||||||||||||||||||||||||    
T  9885399 gacccgtgcggcgcacgggtcggcgttctagtta 9885366  T

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Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 163
Target Start/End: Original strand, 32721323 - 32721359
Alignment:
Q  127 ataagacccgtgcggcgcacgggtcggcgttctagtt 163  Q
    |||||||| ||||||||||||||||||||||||||||    
T  32721323 ataagacctgtgcggcgcacgggtcggcgttctagtt 32721359  T

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Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 131 - 162
Target Start/End: Original strand, 4970052 - 4970083
Alignment:
Q  131 gacccgtgcggcgcacgggtcggcgttctagt 162  Q
    ||||||||||||||||||||||||||||||||    
T  4970052 gacccgtgcggcgcacgggtcggcgttctagt 4970083  T

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Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 116 - 151
Target Start/End: Original strand, 42293495 - 42293530
Alignment:
Q  116 tattttggctcataagacccgtgcggcgcacgggtc 151  Q
    ||||| ||||||||||||||||||||||||||||||    
T  42293495 tatttcggctcataagacccgtgcggcgcacgggtc 42293530  T

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Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 23830912 - 23830944
Alignment:
Q  131 gacccgtgcggcgcacgggtcggcgttctagtt 163  Q
    |||||||||| ||||||||||||||||||||||    
T  23830912 gacccgtgcgacgcacgggtcggcgttctagtt 23830944  T

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Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 122 - 192
Target Start/End: Complemental strand, 20910793 - 20910726
Alignment:
Q  122 ggctcataagacccgtgcggcgcacgggtcggcgttctagttatcctttacatctaatcctagcaaacatg 192  Q
    ||||||||||||||||||||||||||||||||||||||||   || |||| ||||||||||||||||||||    
T  20910793 ggctcataagacccgtgcggcgcacgggtcggcgttctag---tcttttatatctaatcctagcaaacatg 20910726  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 122 - 192
Target Start/End: Complemental strand, 20925241 - 20925174
Alignment:
Q  122 ggctcataagacccgtgcggcgcacgggtcggcgttctagttatcctttacatctaatcctagcaaacatg 192  Q
    ||||||||||||||||||||||||||||||||||||||||   || |||| ||||||||||||||||||||    
T  20925241 ggctcataagacccgtgcggcgcacgggtcggcgttctag---tcttttatatctaatcctagcaaacatg 20925174  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 31661211 - 31661143
Alignment:
Q  94 ttcgttttattgtttatcaaattattttggctcataagacccgtgcggcgcacgggtcggcgttctagt 162  Q
    ||||||||||||| ||||||||||||  ||||||||||||| |||||||||||||||| ||||||||||    
T  31661211 ttcgttttattgtgtatcaaattattccggctcataagacctgtgcggcgcacgggtccgcgttctagt 31661143  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 68 - 162
Target Start/End: Original strand, 15298381 - 15298475
Alignment:
Q  68 attttttaaattccatttcaacatatttcgttttattgtttatcaaattattttggctcataagacccgtgcggcgcacgggtcggcgttctagt 162  Q
    ||||||||||||||||| ||  ||||||| ||||||| | ||||||||||||   ||| |||||||| ||||||||||||| |||||||||||||    
T  15298381 attttttaaattccattccactatatttcattttattatgtatcaaattattccagctaataagacctgtgcggcgcacggatcggcgttctagt 15298475  T

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Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 167 - 236
Target Start/End: Original strand, 8840653 - 8840722
Alignment:
Q  167 ctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaa 236  Q
    ||||| |||||||||||||||||||| |||||||||||| |||||| |||||||| ||||| ||||||||    
T  8840653 ctttatatctaatcctagcaaacatgcttaccctaattgccaaaccttaaacctattttttcggctccaa 8840722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 23073505 - 23073437
Alignment:
Q  168 tttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaa 236  Q
    |||| |||||||||| ||||||||| ||||||||||||||||||||||| |||| ||||||| ||||||    
T  23073505 tttatatctaatccttgcaaacatgcttaccctaattgtcaaaccctaatcctaattttttgtctccaa 23073437  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 20910873 - 20910836
Alignment:
Q  66 tgattttttaaattccatttcaacatatttcgttttat 103  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  20910873 tgattttttaaattccattccaacatatttcgttttat 20910836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 20925321 - 20925284
Alignment:
Q  66 tgattttttaaattccatttcaacatatttcgttttat 103  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  20925321 tgattttttaaattccattccaacatatttcgttttat 20925284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 25357620 - 25357557
Alignment:
Q  164 atcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttt 227  Q
    |||||||| |||||||  | ||||||||| |||||||||||  ||||||||||||||| |||||    
T  25357620 atcctttatatctaatggttgcaaacatgcttaccctaattaccaaaccctaaacctaattttt 25357557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 237
Target Start/End: Original strand, 2319907 - 2319977
Alignment:
Q  167 ctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctact--tttttggctccaat 237  Q
    ||||| ||||||||||| |||| ||||||||||||||  || ||||||||||||| |  ||||||||||||||    
T  2319907 ctttatatctaatcctaacaaatatgtttaccctaat--tccaaccctaaacctaattgtttttggctccaat 2319977  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 7018679 - 7018716
Alignment:
Q  127 ataagacccgtgcggcgcacgggtcggcgttctagtta 164  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  7018679 ataagacccatgcggcgcacgggtcgacgttctagtta 7018716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 165
Target Start/End: Complemental strand, 18328535 - 18328499
Alignment:
Q  129 aagacccgtgcggcgcacgggtcggcgttctagttat 165  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  18328535 aagactcgtgcggcgcacgggtcggcgatctagttat 18328499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 18645950 - 18646022
Alignment:
Q  164 atcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaa 236  Q
    |||||||| ||||||||||||||   |||||||||||||||    |||||||| ||||  |||||||||||||    
T  18645950 atcctttatatctaatcctagcagtaatgtttaccctaatttcttaaccctaatcctaagtttttggctccaa 18646022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 26846230 - 26846262
Alignment:
Q  131 gacccgtgcggcgcacgggtcggcgttctagtt 163  Q
    ||||||||||| |||||||||||||||||||||    
T  26846230 gacccgtgcggtgcacgggtcggcgttctagtt 26846262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 65 - 163
Target Start/End: Complemental strand, 19218 - 19120
Alignment:
Q  65 ctgattttttaaattccatttcaa-catatttcgttttattgtttatcaaattattttggctcataagacccgtgcggcgcacgggtcggcgttctagtt 163  Q
    |||| |||||| |||||||| ||| ||||||| |||||||||| ||| |  |||||  ||||||||||||||||||||||||||| ||||||||||||||    
T  19218 ctgactttttacattccattccaaacatattttgttttattgtgtattag-ttattccggctcataagacccgtgcggcgcacggatcggcgttctagtt 19120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0790 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0790
Description:

Target: scaffold0790; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 3948 - 4002
Alignment:
Q  109 atcaaattattttggctcataagacccgtgcggcgcacgggtcggcgttctagtt 163  Q
    |||||| |||||  ||||||||||||||||||||||||||||||||| |||||||    
T  3948 atcaaaatatttcagctcataagacccgtgcggcgcacgggtcggcgatctagtt 4002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 262
Target Start/End: Complemental strand, 32971 - 32872
Alignment:
Q  163 tatcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctacttttttggctccaatctatccacaccgttagatcattgta 262  Q
    ||||||||| |||||||  | |||||||||   ||| |||||| ||| | |||| |||||||||||||||||| | |||||  |||||||||||||||||    
T  32971 tatcctttatatctaatggttgcaaacatgcaaaccttaattgccaacctctaaccctacttttttggctccattttatcctgaccgttagatcattgta 32872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 129 - 162
Target Start/End: Complemental strand, 28345 - 28312
Alignment:
Q  129 aagacccgtgcggcgcacgggtcggcgttctagt 162  Q
    ||||||||||||||||||||||||||||||||||    
T  28345 aagacccgtgcggcgcacgggtcggcgttctagt 28312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 230464 - 230528
Alignment:
Q  164 atcctttacatctaatcctagcaaacatgtttaccctaattgtcaaaccctaaacctactttttt 228  Q
    |||||||| ||||||||||||||||||||   | ||||||||   ||||||||||||||||||||    
T  230464 atcctttatatctaatcctagcaaacatgcaaatcctaattgcataaccctaaacctactttttt 230528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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