View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3759_low_4 (Length: 373)
Name: NF3759_low_4
Description: NF3759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3759_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 17 - 358
Target Start/End: Complemental strand, 27433153 - 27432812
Alignment:
| Q |
17 |
atgaacgtattttgcatttgtatgcagtggttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccaggaacgttaactggaga |
116 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
27433153 |
atgaacgtattttgcatttgtatgcagcggttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccgggaacgttaactggaga |
27433054 |
T |
|
| Q |
117 |
ccaaaaacctcagctatcaacgacgggttttgagttaggacctggagcaacaattgcggtggaccttccatcaccatggtcgggaagattttggggccga |
216 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||| |
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|
| T |
27433053 |
ccaaaagcctcagctatcaacaacgggttttgagttaggacctggagcaacaattgaggtggaccttccatcaccatggtcgggtcgattttggggacga |
27432954 |
T |
|
| Q |
217 |
actggatgctcagacaacaatggaaagttcagctgtgccactgccgattgtgcctctggtcaactcggttgcaacggtgctggcgcaatcccaccagcaa |
316 |
Q |
| |
|
|| |||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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|
| T |
27432953 |
accggatgctccaacaacaatggaaagttcagttgtgccaccgccgattgtgcctctggtcaagtcggttgtaacggtgctggcgcaatcccaccagcaa |
27432854 |
T |
|
| Q |
317 |
cattggtagaaataaccgtagcaacaaacgggggacaagatt |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27432853 |
cattggtagaaataaccgtagcaacaaacgggggacaagatt |
27432812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 17 - 358
Target Start/End: Complemental strand, 27208073 - 27207732
Alignment:
| Q |
17 |
atgaacgtattttgcatttgtatgcagtggttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccaggaacgttaactggaga |
116 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
27208073 |
atgaacgtatttttcatttgtatgcagtggttggaggagctaaggtgacattcacaaataggtgtgcatacactgtatggccaggaacgttaactggaga |
27207974 |
T |
|
| Q |
117 |
ccaaaaacctcagctatcaacgacgggttttgagttaggacctggagcaacaattgcggtggaccttccatcaccatggtcgggaagattttggggccga |
216 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27207973 |
ccaaaaacctcagctatcgacaacgggttttgagttaggacctggagcaacaattgcggtggaccttccatcaccatggtcgggaagattttggggccga |
27207874 |
T |
|
| Q |
217 |
actggatgctcagacaacaatggaaagttcagctgtgccactgccgattgtgcctctggtcaactcggttgcaacggtgctggcgcaatcccaccagcaa |
316 |
Q |
| |
|
||||||||||| |||||||| |||| ||||||||| ||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
27207873 |
actggatgctccgacaacaacggaaggttcagctgcgccaccgccgattgtgcctccggtcaagtcggttgcaacggtgctggcgcaatcccaccagcaa |
27207774 |
T |
|
| Q |
317 |
cattggtagaaataaccgtagcaacaaacgggggacaagatt |
358 |
Q |
| |
|
|| ||||||||||||| ||||| | |||||||||||||||| |
|
|
| T |
27207773 |
cactggtagaaataacaatagcatccaacgggggacaagatt |
27207732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 37 - 358
Target Start/End: Complemental strand, 27215424 - 27215103
Alignment:
| Q |
37 |
tatgcagtggttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccaggaacgttaactggagaccaaaaacctcagctatcaa |
136 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27215424 |
tatgcagtggttggaggagctaaggtgacgttcacaaataggtgtgaatacactgtatggccaggaacgttaaccggagaccaaaaacctcagctatcaa |
27215325 |
T |
|
| Q |
137 |
cgacgggttttgagttaggacctggagcaacaattgcggtggaccttccatcaccatggtcgggaagattttggggccgaactggatgctcagacaacaa |
236 |
Q |
| |
|
|||| ||||| ||||| ||| |||||| || ||| | ||||||||||||||||||||||| || |||||||||||||||| ||||||| ||||||| |
|
|
| T |
27215324 |
cgacaggtttcgagttgggatctggagttactatttcagtggaccttccatcaccatggtctggtcgattttggggccgaaccggatgcttcaacaacaa |
27215225 |
T |
|
| Q |
237 |
tggaaagttcagctgtgccactgccgattgtgcctctggtcaactcggttgcaacggtgctggcgcaatcccaccagcaacattggtagaaataaccgta |
336 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27215224 |
tggaaagttcagctgtgccaccgccgattgtgcctctggtcaactcggttgcaatggtgctggcgcaatcccaccagcaacattggtagaaataaccgta |
27215125 |
T |
|
| Q |
337 |
gcaacaaacgggggacaagatt |
358 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
27215124 |
gcaacaaacgggggacaagatt |
27215103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 37 - 358
Target Start/End: Original strand, 27443477 - 27443798
Alignment:
| Q |
37 |
tatgcagtggttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccaggaacgttaactggagaccaaaaacctcagctatcaa |
136 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27443477 |
tatgcagttgttggaggagctaaggtgacgttcacaaataggtgtgaatacactgtatggccaggaacgttaaccggagaccaaaaacctcagctatcaa |
27443576 |
T |
|
| Q |
137 |
cgacgggttttgagttaggacctggagcaacaattgcggtggaccttccatcaccatggtcgggaagattttggggccgaactggatgctcagacaacaa |
236 |
Q |
| |
|
|||| ||||| ||||| ||| |||||| || ||| | ||||||||||||||||||||||| || |||||||||||||||| ||||||| ||||||| |
|
|
| T |
27443577 |
cgacaggtttcgagttgggatctggagttactatttcagtggaccttccatcaccatggtctggtcgattttggggccgaaccggatgcttcaacaacaa |
27443676 |
T |
|
| Q |
237 |
tggaaagttcagctgtgccactgccgattgtgcctctggtcaactcggttgcaacggtgctggcgcaatcccaccagcaacattggtagaaataaccgta |
336 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27443677 |
tggaaagttcagctgtgccaccgccgattgtgcctctggtcaactcggttgcaatggtgctggcgcaatcccaccagcaacattggtagaaataaccgta |
27443776 |
T |
|
| Q |
337 |
gcaacaaacgggggacaagatt |
358 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
27443777 |
gcaacaaacgggggacaagatt |
27443798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 37 - 356
Target Start/End: Complemental strand, 27221386 - 27221067
Alignment:
| Q |
37 |
tatgcagtggttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccaggaacgttaactggagaccaaaaacctcagctatcaa |
136 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27221386 |
tatgcagtggttggaggagctaaggtgactttcacaaataggtgtgaatacactgtatggccaggaacgttaaccggagaccaaaaacctcagctatcaa |
27221287 |
T |
|
| Q |
137 |
cgacgggttttgagttaggacctggagcaacaattgcggtggaccttccatcaccatggtcgggaagattttggggccgaactggatgctcagacaacaa |
236 |
Q |
| |
|
|||| ||||| ||||| ||| |||||| || ||| | |||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||| |
|
|
| T |
27221286 |
cgacaggtttcgagttgggatctggagttactatttcagtggaccttccatcaccatggtcgggtagattttggggccgaaccggatgcttcaacaacaa |
27221187 |
T |
|
| Q |
237 |
tggaaagttcagctgtgccactgccgattgtgcctctggtcaactcggttgcaacggtgctggcgcaatcccaccagcaacattggtagaaataaccgta |
336 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
27221186 |
tggaaagttcagctgtgccaccgccgattgtgcctctggtcaagtcggttgcaacggtgctggggcaatcccaccagcaacattggtagaaataacggta |
27221087 |
T |
|
| Q |
337 |
gcaacaaacgggggacaaga |
356 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
27221086 |
gcaacagacgggggacaaga |
27221067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 33 - 358
Target Start/End: Complemental strand, 27389351 - 27389026
Alignment:
| Q |
33 |
tttgtatgcagtggttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccaggaacgttaactggagaccaaaaacctcagcta |
132 |
Q |
| |
|
||||||||||| | | ||||||| | ||| |||||||| ||||| |||| |||||| |||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
27389351 |
tttgtatgcagctgctagaggagccacggtaacattcacgaatagatgtggatacaccgtatggccaggaaccttaaccggagaccaaaaacctcagcta |
27389252 |
T |
|
| Q |
133 |
tcaacgacgggttttgagttaggacctggagcaacaattgcggtggaccttccatcaccatggtcgggaagattttggggccgaactggatgctcagaca |
232 |
Q |
| |
|
||||| || ||||| |||||||||||||||||||| | | | ||| |||| || |||||||| || ||||||||| |||||| ||||||||| || |
|
|
| T |
27389251 |
tcaacaacaggtttcgagttaggacctggagcaacgaactcagcggaaattccttccccatggtcaggtcgattttgggcccgaaccggatgctcaacca |
27389152 |
T |
|
| Q |
233 |
acaatggaaagttcagctgtgccactgccgattgtgcctctggtcaactcggttgcaacggtgctggcgcaatcccaccagcaacattggtagaaataac |
332 |
Q |
| |
|
|||| ||| |||| | |||||||||||||||||||| ||||||||| | | ||||| |||||||||||||||||||||||||| ||||| ||||| || |
|
|
| T |
27389151 |
acaacggacagtttacttgtgccactgccgattgtgcatctggtcaagttgcatgcaatggtgctggcgcaatcccaccagcaactttggttgaaattac |
27389052 |
T |
|
| Q |
333 |
cgtagcaacaaacgggggacaagatt |
358 |
Q |
| |
|
|| ||| |||| || |||||||||| |
|
|
| T |
27389051 |
agtggcatcaaatggaggacaagatt |
27389026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 33 - 358
Target Start/End: Complemental strand, 27410307 - 27409982
Alignment:
| Q |
33 |
tttgtatgcagtggttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccaggaacgttaactggagaccaaaaacctcagcta |
132 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||||| |||| ||| ||||||||||||||||| || ||| || |||| ||||| || |
|
|
| T |
27410307 |
tttgtatgcagtggttggaggagccaaggtgacattcacgaatagatgtggatatactgtatggccaggaacctttactacagctcaaacccctcaatta |
27410208 |
T |
|
| Q |
133 |
tcaacgacgggttttgagttaggacctggagcaacaattgcggtggaccttccatcaccatggtcgggaagattttggggccgaactggatgctcagaca |
232 |
Q |
| |
|
||||| || ||||||||||| |||| |||| || ||||| ||||||| || ||||||| || ||||||||| |||| ||||||||| || |
|
|
| T |
27410207 |
tcaacaacaggttttgagttgggacaaggagtgacgtactcggtgaaccttccttcttcatggtctggtcgattttgggcaagaaccggatgctcaatca |
27410108 |
T |
|
| Q |
233 |
acaatggaaagttcagctgtgccactgccgattgtgcctctggtcaactcggttgcaacggtgctggcgcaatcccaccagcaacattggtagaaataac |
332 |
Q |
| |
|
|||| | |||||| || |||||||| |||||||||| ||||||||| | || ||||| |||||||||||||||||||||||||| || || ||||| || |
|
|
| T |
27410107 |
acaaagaaaagtttagttgtgccacagccgattgtgggtctggtcaagtggggtgcaatggtgctggcgcaatcccaccagcaactttagttgaaattac |
27410008 |
T |
|
| Q |
333 |
cgtagcaacaaacgggggacaagatt |
358 |
Q |
| |
|
| | ||| |||| || |||||||||| |
|
|
| T |
27410007 |
catggcatcaaatggaggacaagatt |
27409982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 24 - 227
Target Start/End: Complemental strand, 27455294 - 27455093
Alignment:
| Q |
24 |
tattttgcatttgtatgcagtggttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccaggaacgttaactggagaccaaaaa |
123 |
Q |
| |
|
|||||||||||| || |||| |||||||||||||||||||||||||| |||| ||||||||| | |||||| | || |||||||||| |||| |||||| |
|
|
| T |
27455294 |
tattttgcatttctaatcagtagttggaggagctaaggtgacattcaccaataagtgtgaataaattgtatgactagaaacgttaactagaga-caaaaa |
27455196 |
T |
|
| Q |
124 |
cctcagctatcaacgacgggttttgagttaggacctggagcaacaattgcggtggaccttccatcaccatggtcgggaagattttggggccgaactggat |
223 |
Q |
| |
|
|||||||||| |||||| |||| || || ||| || ||| || ||| | |||||||||||||||||||| || || ||||||| ||||||| |||| |
|
|
| T |
27455195 |
cctcagctatgaacgacaagtttcgacttgggatctagag-tactatttcagtggaccttccatcaccatgatcaggttgattttgaggccgaatcggat |
27455097 |
T |
|
| Q |
224 |
gctc |
227 |
Q |
| |
|
|||| |
|
|
| T |
27455096 |
gctc |
27455093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 104
Target Start/End: Original strand, 27415750 - 27415821
Alignment:
| Q |
33 |
tttgtatgcagtggttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccaggaac |
104 |
Q |
| |
|
||||| ||||| |||||||||||| |||||||||||||| ||||| |||| ||||||||||||||||||||| |
|
|
| T |
27415750 |
tttgtctgcagaggttggaggagccaaggtgacattcacgaatagatgtgtatacactgtatggccaggaac |
27415821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 332
Target Start/End: Complemental strand, 27454834 - 27454755
Alignment:
| Q |
253 |
gccactgccgattgtgcctctggtcaactcggttgcaacggtgctggcgcaatcccaccagcaacattggtagaaataac |
332 |
Q |
| |
|
||||||||||||||| ||| |||||| | |||| ||| | ||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
27454834 |
gccactgccgattgtatctccggtcaaatgggttccaatgatgcaggtgcaatcccaccagcaacattggtagaaataac |
27454755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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