View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3759_low_6 (Length: 254)
Name: NF3759_low_6
Description: NF3759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3759_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 49 - 242
Target Start/End: Original strand, 29149878 - 29150071
Alignment:
| Q |
49 |
tgaaattgaaccaaacggagtcataaaccactggattataggatattagtgtagttatgtttgtttcttgcaattcaagcaaccgtaacaatcgatgaaa |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29149878 |
tgaaattgaaccaaacggagtcataaaccactggattataggatattagtgtagttatgtttgtttcttgcaattcaagcaaccgtaacaatcgatgaaa |
29149977 |
T |
|
| Q |
149 |
ttgagagtaagaagaagagagaatgaggaaggtggttatggagaaagaaaaaatttattgggagcttgnnnnnnncattgattaatgaaaatag |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29149978 |
ttgagagtaagaagaagagagaatgaggaaggtggttatggagaaagaaaaaatttattgggagcttgtttttttcattgattaatgaaaatag |
29150071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 109 - 190
Target Start/End: Original strand, 34741302 - 34741383
Alignment:
| Q |
109 |
ttgtttcttgcaattcaagcaaccgtaacaatcgatgaaattgagagtaagaagaagagagaatgaggaaggtggttatgga |
190 |
Q |
| |
|
|||||||||||||||||||||| | ||||||| |||||||||||||||| ||||||||||||||| | |||||||||||||| |
|
|
| T |
34741302 |
ttgtttcttgcaattcaagcaatcataacaatggatgaaattgagagtaggaagaagagagaatgcgaaaggtggttatgga |
34741383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 104 - 173
Target Start/End: Original strand, 8168886 - 8168955
Alignment:
| Q |
104 |
tatgtttgtttcttgcaattcaagcaaccgtaacaatcgatgaaattgagagtaagaagaagagagaatg |
173 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
8168886 |
tatgtttgtttcttgcaattcaagcaatcataacaatggatgaatttgagagtaagaagaagagagaatg |
8168955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 92 - 197
Target Start/End: Complemental strand, 36020114 - 36020009
Alignment:
| Q |
92 |
tattagtgtagttatgtttgtttcttgcaattcaagcaaccgtaacaatcgatgaaattgagagtaagaagaagagagaatgaggaaggtggttatggag |
191 |
Q |
| |
|
|||||||| || ||||||||||||||| ||||||| ||| | ||||||| |||||||||||||||| || |||| ||||||||||||||| |||| ||| |
|
|
| T |
36020114 |
tattagtgaagctatgtttgtttcttgtaattcaaacaatcataacaatggatgaaattgagagtataaacaagatagaatgaggaaggtgattattgag |
36020015 |
T |
|
| Q |
192 |
aaagaa |
197 |
Q |
| |
|
| |||| |
|
|
| T |
36020014 |
agagaa |
36020009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University