View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3761_high_13 (Length: 503)
Name: NF3761_high_13
Description: NF3761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3761_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Complemental strand, 51254982 - 51254499
Alignment:
| Q |
1 |
attagcaaaataaatatctagggcaagaggacgaaatgttgtaaatatcagaatatacaatctctatatattgataaaacatttgaataaaagtaaatgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51254982 |
attagcaaaataaatatctagggcaagaggacgaaatgttgtaaatatcagaatatacaatctctatatattgataaaacatttgaataaaagtaaatgt |
51254883 |
T |
|
| Q |
101 |
gttttctcttatttgatcagatagaaagggaaaggaacaacatgatattatttgaaaagatgataatattcttaatctaaataaatataacttcttttga |
200 |
Q |
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| T |
51254882 |
gttttctcttatttgatcagatagaaagggaaaggaacaacatgatattatttgaaaagatgataatattcttaatctaaataaatataacttcttttga |
51254783 |
T |
|
| Q |
201 |
cgaataaataaatactataactttccttcnnnnnnnntaataatactataacttatttagtgttatacatcaatttcatattataccaaatttaattttt |
300 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
51254782 |
cgaataaataaatactataactttccttc-aaaaaaataataatactataacttatttaatgttatacatcaatttcatattataccaaatttaattttt |
51254684 |
T |
|
| Q |
301 |
tattttgataaactaaacagtaaataaagtttctgttttaaattacttatgatataaactatgaatacttcaatttccaatttagcacccgnnnnnnnag |
400 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
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| T |
51254683 |
tattttgataaactaaacaataaataaagtttctgttttaaattacttatgatataaactatgaatacttcaatttccagtttagcacccgtttttttag |
51254584 |
T |
|
| Q |
401 |
aacttccattctcaactttcgataactaaaatgcaaaagtctttcttctttcctcacttgtttttctttctagtttcaggctcattgt |
488 |
Q |
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|||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51254583 |
aactcccattctcaactttcgaaaactaaaatgcaaaa---tttcttctttcctcacttgtttttctttctagtttcaggctcattgt |
51254499 |
T |
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