View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3761_high_14 (Length: 482)
Name: NF3761_high_14
Description: NF3761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3761_high_14 |
 | |
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| [»] chr4 (5 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 11 - 482
Target Start/End: Complemental strand, 47731991 - 47731516
Alignment:
| Q |
11 |
cagagataaaaatgaagtattgaaaaatgtagacaaaccaatacatatccattcaatccaaacagggctcttgaagtatctcaatctttgtctctcttaa |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
47731991 |
cagagataaaaatgaagtattgaaaaatgtagacaaaccaatacatatccactcaatccaaacagggctcttgaagtatctttatctttgtctctcttaa |
47731892 |
T |
|
| Q |
111 |
ctgttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaacaaaa |
210 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
47731891 |
ctgttttatgtcttggattaaaacaacataagcatgaaacctcattgggaaaccattgaggatgttgatacaatgaagagaatcagagtagcaaacaaaa |
47731792 |
T |
|
| Q |
211 |
ttagtaatacccatttctttggccaacaggagacccttatagatgacataaagttcaacatacaagatatcaggtgaattttagatgtatcca-----ga |
305 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||| || ||||||||||||||||| | |
|
|
| T |
47731791 |
ttagtaatacccatttctttggccaacatgagacccttatagatgacataaagctcaacgtacaagatatcaagtaaattttagatgtatccaatccagt |
47731692 |
T |
|
| Q |
306 |
aaagcctgataagtaaaaaacctgcatcatttcttaaaattcctccataacctgctcttataagagatctaaggcaacttccatcaacattaaggatgac |
405 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47731691 |
aaagcctgataag-aaaaaacctgcatcatttcttaaaattcctccataacctgctcttataggagatctaaggcaacttccatcaacattaaggatgac |
47731593 |
T |
|
| Q |
406 |
acaagaatgattattgctgttccatttgatgaattgggcttcatgagtagtactagagatgaaaggataagaagctt |
482 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47731592 |
acaagaatgattattgttgttccatttgatgaattgggcttcatgagtagtactagagatgaaaggataagaagctt |
47731516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 116 - 482
Target Start/End: Original strand, 50822894 - 50823257
Alignment:
| Q |
116 |
ttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaacaaaattagt |
215 |
Q |
| |
|
|||| ||||| ||||||||||||||||||| |||||||||| || ||||||||||||||||||||| || | ||| || |||||||||||||||| ||| |
|
|
| T |
50822894 |
ttatgtcttgaattaaaacaacataagcatgaaacctcattgggggaccattgaggatgttgatacagtgtaaagagtcagagtagcaaacaaaatcagt |
50822993 |
T |
|
| Q |
216 |
aatacccatttctttggccaacaggagacccttatagatgacataaagttcaacatacaagatatcaggtgaattttagatgtatccagaaaagcctgat |
315 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||| ||||||| ||| |||||||| |||| |||||||| |||||||||||||||||||| |
|
|
| T |
50822994 |
aatactcatttctttggccaacaagagacccttatagatggcataaagctcatcatacaag--atcaaatgaattttgaatgtatccagaaaagcctgac |
50823091 |
T |
|
| Q |
316 |
aagtaaaaaacctgcatcatttcttaaaattcctccataacctgctcttataagagatctaaggcaacttccatcaacattaaggatgacacaagaatga |
415 |
Q |
| |
|
|||| |||||||||||| ||| |||||||||||||||||||| ||||| || |||||| ||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
50823092 |
aagt-aaaaacctgcataattccttaaaattcctccataaccaactcttctaggagatccaaggcaacttccatcaacatttagaatgacacaagaatga |
50823190 |
T |
|
| Q |
416 |
ttattgctgttccatttgatgaattgggcttcatgagtagtactagagatgaaaggataagaagctt |
482 |
Q |
| |
|
|||||| ||||||| || ||||||||| |||||| |||||||||||||||| |||||| | |||||| |
|
|
| T |
50823191 |
ttattgttgttccacttaatgaattggtcttcatcagtagtactagagatggaaggatgacaagctt |
50823257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 108 - 474
Target Start/End: Original strand, 26333912 - 26334277
Alignment:
| Q |
108 |
taactgttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaaca |
207 |
Q |
| |
|
||||| |||||| ||||| ||||||||||||||||||| ||||||||| || ||||| |||||||||||| |||| | |||||| |||||| ||||| |
|
|
| T |
26333912 |
taactcttttatgtcttgaattaaaacaacataagcatgtaacctcattggggggccattaaggatgttgatataatgtaaagaatcagagtagaaaaca |
26334011 |
T |
|
| Q |
208 |
aaattagtaatacccatttctttggccaacaggagacccttatagatgacataaagttcaacatacaagatatcaggtgaattttagatgtatccagaaa |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||||||| ||||||| |||||||||||||||||| |||||||| ||||| |||||| |
|
|
| T |
26334012 |
aaattagtaatacccatttctttggccaacaagatacccttatagatggcataaagcccaacatacaagatatcagatgaattttgaatgtacacagaaa |
26334111 |
T |
|
| Q |
308 |
agcctgataagtaaaaaacctgcatcatttcttaaaattcctccataacctgctcttataagagatctaaggcaacttccatcaacattaaggatgacac |
407 |
Q |
| |
|
|| |||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||| ||||||||| |
|
|
| T |
26334112 |
agtctgacaag-aaaaaacctgcatcatttcttaaaattcctccataaccagctcttataagagatccaaggcaacttcaatcaacattacggatgacac |
26334210 |
T |
|
| Q |
408 |
aagaatgattattgctgttccatttgatgaattgggcttcatgagtagtactagagatgaaaggata |
474 |
Q |
| |
|
|| || |||| ||| ||||||| |||||||||||| ||||| |||||| |||||||| ||||||| |
|
|
| T |
26334211 |
aacaaagattgttgttgttccagttgatgaattggctttcatcggtagtattagagatggaaggata |
26334277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 114 - 482
Target Start/End: Original strand, 11376216 - 11376576
Alignment:
| Q |
114 |
ttttatctcttggattaaaacaa-cataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaacaaaatt |
212 |
Q |
| |
|
|||||| |||||||||| ||||| ||||||||| ||||||||||| ||| ||||| |||||||||| | |||||| |||||||||||||||| |
|
|
| T |
11376216 |
ttttatgtcttggattagaacaaacataagcatgaaacctcatta--------ttggggatggtgatacaatgtaaagaatcagagtagcaaacaaaatc |
11376307 |
T |
|
| Q |
213 |
agtaatacccatttctttggccaacaggagacccttatagatgacataaagttcaacatacaagatatcaggtgaattttagatgtatccagaaaagcct |
312 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| |||| || ||| ||||||||||||||| |||||||| ||||||| |||||||||| |
|
|
| T |
11376308 |
agtaatacccatttctttggccaacaaaagacccttatagatggcatagagctcagcatacaagatatcagatgaattttgaatgtatctagaaaagcct |
11376407 |
T |
|
| Q |
313 |
gataagtaaaaaacctgcatcatttcttaaaattcctccataacctgctcttataagagatctaaggcaacttccatcaacattaaggatgacacaagaa |
412 |
Q |
| |
|
|| ||| ||||||||||||| |||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||| || |
|
|
| T |
11376408 |
gacaag-aaaaaacctgcataatttcttaaaattcttccataacctgctcttataggagatccaaggcaacttccatcaacattaacgatgacacaaaaa |
11376506 |
T |
|
| Q |
413 |
tgattattgctgttccatttgatgaattgggcttcatgagtagtactagagatgaaaggataagaagctt |
482 |
Q |
| |
|
||||||||| || |||| |||||||||| | |||||| | ||||||| | ||| ||||||||||||||| |
|
|
| T |
11376507 |
tgattattgttgctccacttgatgaatttgtcttcatcaatagtacttcaaatggaaggataagaagctt |
11376576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 166 - 346
Target Start/End: Complemental strand, 12271351 - 12271172
Alignment:
| Q |
166 |
ttgaggatgttgatacaatgaagagaatcggagtagcaaacaaaattagtaatacccatttctttggccaacaggagacccttatagatgacataaagtt |
265 |
Q |
| |
|
|||| ||||||||||||||| | ||| || || || ||||| | || ||||||||||| ||||| | || || |||||| | ||||||| |||| | | |
|
|
| T |
12271351 |
ttgatgatgttgatacaatgtaaagagtctgaataacaaactaggttggtaatacccatgtctttagtcatcaagagaccatgatagatggcatataact |
12271252 |
T |
|
| Q |
266 |
caacatacaagatatcaggtgaattttagatgtatccagaaaagcctgataagtaaaaaacctgcatcatttcttaaaatt |
346 |
Q |
| |
|
|| ||||||| || |||| |||||| ||||| |||||||||||||| ||| || |||||||||||||||||||||||| |
|
|
| T |
12271251 |
cagcatacaaaatgtcagaagaatttggaatgtagccagaaaagcctgacaag-aagaaacctgcatcatttcttaaaatt |
12271172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 108 - 440
Target Start/End: Original strand, 11052044 - 11052375
Alignment:
| Q |
108 |
taactgttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaaca |
207 |
Q |
| |
|
||||| |||||| ||||| ||||| ||||||||| ||| ||||||| || || ||||||||||||||||||||||||| | |||||| |||||||||||| |
|
|
| T |
11052044 |
taactcttttatatcttgaattaatacaacataaacattaaacctcgttggggaaccattgaggatgttgatacaatgtaaagaatcagagtagcaaaca |
11052143 |
T |
|
| Q |
208 |
aaattagtaatacccatttctttggccaacaggagacccttatagatgacataaagttcaacatacaagatatcaggtgaattttagatgtatccagaaa |
307 |
Q |
| |
|
|||| ||||||||| |||||||||||||||| |||||||||||||||| |||| || ||||||||||||||||||| || ||||| ||||| | ||||| |
|
|
| T |
11052144 |
aaatcagtaatacctatttctttggccaacaagagacccttatagatggcatagagctcaacatacaagatatcagatggattttgaatgtacctagaaa |
11052243 |
T |
|
| Q |
308 |
agcctgataagtaaaaaacctgcatcatttcttaaaattcctccataacctgctcttataagagatctaaggcaacttccatcaacattaaggatgacac |
407 |
Q |
| |
|
||||||| ||| |||||| |||||||||||| |||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
11052244 |
agcctgacaag-aaaaaatctgcatcatttcgtaaaattcctccataaccagctcttataggagatccaaggcaacttccatcaacattaaggatgtcac |
11052342 |
T |
|
| Q |
408 |
aagaatgattattgctgttccatttgatgaatt |
440 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||| |
|
|
| T |
11052343 |
aagaatgattattgttgttccacttgatgaatt |
11052375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 165 - 482
Target Start/End: Complemental strand, 24874147 - 24873831
Alignment:
| Q |
165 |
attgaggatgttgatacaatgaagagaatcggagtagcaaacaaaattagtaatacccatttctttggccaacaggagacccttatagatgacataaagt |
264 |
Q |
| |
|
||||| ||||||||||||||| | |||||| || ||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||| ||| |
|
|
| T |
24874147 |
attgaagatgttgatacaatgtaaagaatcagaatagcaaacaaaatcagtaatacccatttctttagccaacaagagacccttatagatgacatagagt |
24874048 |
T |
|
| Q |
265 |
tcaacatacaagatatcaggtgaattttagatgtatccagaaaagcctgataagtaaaaaacctgcatcatttcttaaaattcctccataacctgctctt |
364 |
Q |
| |
|
|| ||||||||||||||| |||||||| ||||||||| |||| ||||| ||| ||||||||||||| ||||||||||||||||||||||| ||| || |
|
|
| T |
24874047 |
tcggcatacaagatatcagatgaattttgaatgtatccataaaatcctgacaag-aaaaaacctgcataatttcttaaaattcctccataactagctatt |
24873949 |
T |
|
| Q |
365 |
ataagagatctaaggcaacttccatcaacattaaggatgacacaagaatgattattgctgttccatttgatgaattgggcttcatgagtagtactagaga |
464 |
Q |
| |
|
|| |||||| || |||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||| |||||| | | || ||||| |
|
|
| T |
24873948 |
gtaggagatccaatgcaacttccatcaacattaaggatgacacaagcatgattattattgttccacttgatgaattggtcttcatcaccaatattagagg |
24873849 |
T |
|
| Q |
465 |
tgaaaggataagaagctt |
482 |
Q |
| |
|
|| |||||||| |||||| |
|
|
| T |
24873848 |
tggaaggataacaagctt |
24873831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 108 - 434
Target Start/End: Complemental strand, 11106874 - 11106549
Alignment:
| Q |
108 |
taactgttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaaca |
207 |
Q |
| |
|
||||| |||||| ||||| || |||||| ||||| ||| ||||||||| ||| |||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11106874 |
taactcttttatatcttgaatcaaaacagcataaacatgaaacctcatgaggggaccattaaggatgttgatacaatgaagagaattagagtagcaaaat |
11106775 |
T |
|
| Q |
208 |
aaattagtaatacccatttctttggccaacaggagacccttatagatgacataaagttcaacatacaagatatcaggtgaattttagatgtatccagaaa |
307 |
Q |
| |
|
|||| || | ||||||| | |||||||| || || |||| ||| ||| ||||||||||| || |||| |||| || ||||||| |||||| ||||| | |
|
|
| T |
11106774 |
aaatcagaattacccatgtttttggccagcaaaaggccctgatatatggcataaagttcagcaaacaaaatattagaagaattttggatgtaaccagaga |
11106675 |
T |
|
| Q |
308 |
agcctgataagtaaaaaacctgcatcatttcttaaaattcctccataacctgctcttataagagatctaaggcaacttccatcaacattaaggatgacac |
407 |
Q |
| |
|
| || || |||| |||||| ||||| ||||||||||| |||||||||||| || ||| || |||||| | ||||||| ||||||||||||||||||| |
|
|
| T |
11106674 |
aacccgacaagt-aaaaacttgcataatttcttaaaactcctccataaccggcccttgtaggagatcccaagcaacttaagtcaacattaaggatgacac |
11106576 |
T |
|
| Q |
408 |
aagaatgattattgctgttccatttga |
434 |
Q |
| |
|
|||| || |||||| |||||||||||| |
|
|
| T |
11106575 |
aagagtggttattgttgttccatttga |
11106549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 220
Target Start/End: Complemental strand, 30987203 - 30987097
Alignment:
| Q |
114 |
ttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaacaaaatta |
213 |
Q |
| |
|
|||||| ||||| || |||||||||||| ||| | ||||| | || | |||| ||||||||||||||||||||| |||| ||||||||||| |||| | |
|
|
| T |
30987203 |
ttttatatcttgaatcaaaacaacataaacatgatacctcctggggggatcattaaggatgttgatacaatgaagaaaatcagagtagcaaactaaatca |
30987104 |
T |
|
| Q |
214 |
gtaatac |
220 |
Q |
| |
|
|||||| |
|
|
| T |
30987103 |
ttaatac |
30987097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 251
Target Start/End: Original strand, 4913900 - 4913977
Alignment:
| Q |
174 |
gttgatacaatgaagagaatcggagtagcaaacaaaattagtaatacccatttctttggccaacaggagacccttata |
251 |
Q |
| |
|
|||||| ||| ||||||||| |||||||||||||||| | |||||||||||||| ||||| | |||||| ||||| |
|
|
| T |
4913900 |
gttgatgcaaagaagagaattcgagtagcaaacaaaatcatcgatacccatttctttagccaatatgagaccattata |
4913977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 406
Target Start/End: Complemental strand, 30987028 - 30986943
Alignment:
| Q |
321 |
aaaaacctgcatcatttcttaaaattcctccataacctgctcttataagagatctaaggcaacttccatcaacattaaggatgaca |
406 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||| || | || |||| | | ||||||| | |||||||||||||||||| |
|
|
| T |
30987028 |
aaaaacctgcatcatttcttaaaactcctctataaccagcccacgtaggagagcccaagcaactttcgtcaacattaaggatgaca |
30986943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 439
Target Start/End: Complemental strand, 18055682 - 18055614
Alignment:
| Q |
371 |
gatctaaggcaacttccatcaacattaaggatgacacaagaatgattattgctgttccatttgatgaat |
439 |
Q |
| |
|
|||| ||| ||||| |||||||||||||| || |||||||| || ||||| ||||||| ||||||||| |
|
|
| T |
18055682 |
gatccaagacaactaccatcaacattaagaatcacacaagagtggttattattgttccacttgatgaat |
18055614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 139; Significance: 2e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 114 - 482
Target Start/End: Original strand, 9083023 - 9083388
Alignment:
| Q |
114 |
ttttatctcttggattaaaacaacataagcataaaacctcattaggaa-accattgaggatgttgatacaatgaagagaatcggagtagcaaacaaaatt |
212 |
Q |
| |
|
|||||| ||||||||||||||| |||||||| |||||||||| || |||||||||||||||||||||||| | || ||| |||||||||||||||| |
|
|
| T |
9083023 |
ttttatatcttggattaaaacagaataagcatgaaacctcattggggggaccattgaggatgttgatacaatgtaaagcatcagagtagcaaacaaaatc |
9083122 |
T |
|
| Q |
213 |
agtaatacccatttctttggccaacaggagacccttatagatgacataaagttcaacatacaagatatcaggtgaattttagatgtatccagaaaagcct |
312 |
Q |
| |
|
| ||||||||| | ||||||||||| |||||| |||||||| |||| || ||| |||||||||| ||| |||||||| |||||||||||||||||| |
|
|
| T |
9083123 |
aagaatacccatatatttggccaacaagagacctttatagatagcatagagctcatcatacaagat--cagatgaattttgaatgtatccagaaaagcct |
9083220 |
T |
|
| Q |
313 |
gataagtaaaaaacctgcatcatttcttaaaattcctccataacctgctcttataagagatctaaggcaacttccatcaacattaaggatgacacaagaa |
412 |
Q |
| |
|
| ||| ||||||||||||| |||||||||||||||||||| || ||||||| |||||| ||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
9083221 |
aacaag-aaaaaacctgcatagtttcttaaaattcctccatagccagctcttactggagatccaagacaacttccatcaacattaaggttgacacaagaa |
9083319 |
T |
|
| Q |
413 |
tgattattgctgttccatttgatgaattgggcttcatgagtagtactagagatgaaaggataagaagctt |
482 |
Q |
| |
|
||||||||| || |||| |||||||||| | |||||| ||||| |||||||| ||| |||| |||||| |
|
|
| T |
9083320 |
tgattattgttggtccacttgatgaatt-gtcttcatagatagtattagagatggaagtataacaagctt |
9083388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 111; Significance: 8e-56; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 256 - 482
Target Start/End: Original strand, 43708934 - 43709159
Alignment:
| Q |
256 |
acataaagttcaacatacaagatatcaggtgaattttagatgtatccagaaaagcctgataagtaaaaaacctgcatcatttcttaaaattcctccataa |
355 |
Q |
| |
|
||||| || |||||||||||||||||| |||||||| ||||||| |||||| ||| | ||| |||||| ||||| |||||||||||||||||||||| |
|
|
| T |
43708934 |
acatagagctcaacatacaagatatcatttgaattttgaatgtatctagaaaatcctcacaag-aaaaaagatgcataatttcttaaaattcctccataa |
43709032 |
T |
|
| Q |
356 |
cctgctcttataagagatctaaggcaacttccatcaacattaaggatgacacaagaatgattattgctgttccatttgatgaattgggcttcatgagtag |
455 |
Q |
| |
|
||| |||||||| |||||| || |||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||| |||||| ||||| |
|
|
| T |
43709033 |
cctactcttataggagatccaatacaacttccatcaacattaaggatgacacaaaaatgattattgttgttccgcttgatgaattggtcttcatcagtag |
43709132 |
T |
|
| Q |
456 |
tactagagatgaaaggataagaagctt |
482 |
Q |
| |
|
||||| ||||| |||||||| |||||| |
|
|
| T |
43709133 |
tactaaagatggaaggataacaagctt |
43709159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 108 - 260
Target Start/End: Original strand, 43706607 - 43706759
Alignment:
| Q |
108 |
taactgttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaaca |
207 |
Q |
| |
|
||||| |||||| |||||||||||||| ||||| ||| |||||||||| || ||||| ||||||||||| |||||| | ||| || ||||| |||||| |
|
|
| T |
43706607 |
taactattttatgtcttggattaaaacggcataaacatgaaacctcattgggggaccatggaggatgttgagacaatgtaaagagtcagagtaacaaaca |
43706706 |
T |
|
| Q |
208 |
aaattagtaatacccatttctttggccaacaggagacccttatagatgacata |
260 |
Q |
| |
|
|||| |||||| || |||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
43706707 |
aaatcagtaatgcctatttctttggccaacaagagacccttatatatgacata |
43706759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 406
Target Start/End: Original strand, 564570 - 564599
Alignment:
| Q |
377 |
aggcaacttccatcaacattaaggatgaca |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
564570 |
aggcaacttccatcaacattaaggatgaca |
564599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 166 - 354
Target Start/End: Complemental strand, 35532888 - 35532701
Alignment:
| Q |
166 |
ttgaggatgttgatacaatgaagagaatcggagtagcaaacaaaattagtaatacccatttctttggccaacaggagacccttatagatgacataaagtt |
265 |
Q |
| |
|
|||| ||||||||||||||| | |||||||| || ||||| | || ||||||||||| |||| | || || ||||| | |||||||||||| | | |
|
|
| T |
35532888 |
ttgatgatgttgatacaatgtaaagaatcggcataacaaactaggttggtaatacccatgtcttcagtcagcaaaagaccatgatagatgacatataact |
35532789 |
T |
|
| Q |
266 |
caacatacaagatatcaggtgaattttagatgtatccagaaaagcctgataagtaaaaaacctgcatcatttcttaaaattcctccata |
354 |
Q |
| |
|
|||||||||| || |||| |||||| |||||||||||||||||||| |||| | | |||||||||||||||||||||||| ||||| |
|
|
| T |
35532788 |
caacatacaaaatgtcagaagaatttggaatgtatccagaaaagcctgacaagt-agacacctgcatcatttcttaaaattccaccata |
35532701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 12734595 - 12734486
Alignment:
| Q |
114 |
ttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaacaaaatta |
213 |
Q |
| |
|
|||||| ||||| || |||||| ||||| ||| ||||||||| || | ||||| |||||||||||||||||||||||||| ||||||||||| |||| | |
|
|
| T |
12734595 |
ttttatatcttgaatcaaaacagcataaacatgaaacctcatggggga-ccattaaggatgttgatacaatgaagagaatcagagtagcaaactaaatca |
12734497 |
T |
|
| Q |
214 |
gtaatacccat |
224 |
Q |
| |
|
| ||||||||| |
|
|
| T |
12734496 |
gaaatacccat |
12734486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 205
Target Start/End: Original strand, 17654871 - 17654961
Alignment:
| Q |
114 |
ttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatcggagtagcaaa |
205 |
Q |
| |
|
|||||| ||||| || |||||| ||||| || |||||||||| |||| ||||| |||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
17654871 |
ttttatatcttgaatcaaaacagcataaagatgaaacctcatttggaa-ccattaaggatgttgatacaataaagagaatcagagtagcaaa |
17654961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 321 - 429
Target Start/End: Complemental strand, 28697269 - 28697161
Alignment:
| Q |
321 |
aaaaacctgcatcatttcttaaaattcctccataacctgctcttataagagatctaaggcaacttccatcaacattaaggatgacacaagaatgattatt |
420 |
Q |
| |
|
||||||| |||||||||||||| | ||||||||| || |||||||| |||| | | | ||||||| | ||||||| ||||| | ||| ||||||||||| |
|
|
| T |
28697269 |
aaaaacccgcatcatttcttaagaatcctccatagccaactcttatatgagagccacgacaacttctaccaacatttaggattaaacatgaatgattatt |
28697170 |
T |
|
| Q |
421 |
gctgttcca |
429 |
Q |
| |
|
| ||||||| |
|
|
| T |
28697169 |
gttgttcca |
28697161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 194
Target Start/End: Original strand, 41430547 - 41430633
Alignment:
| Q |
108 |
taactgttttatctcttggattaaaacaacataagcataaaacctcattaggaaaccattgaggatgttgatacaatgaagagaatc |
194 |
Q |
| |
|
||||| |||||| ||||| || ||||| ||||| ||||||||||||| | |||||| | |||||||||||||||||||||||| |
|
|
| T |
41430547 |
taactcttttatatcttgaatcgaaacatcataaacataaaacctcatggagggaccattaaagatgttgatacaatgaagagaatc |
41430633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 364
Target Start/End: Original strand, 34295602 - 34295643
Alignment:
| Q |
323 |
aaacctgcatcatttcttaaaattcctccataacctgctctt |
364 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || |||||| |
|
|
| T |
34295602 |
aaacctgcatcatttcttaaaattccaccatagccagctctt |
34295643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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