View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3761_high_15 (Length: 477)

Name: NF3761_high_15
Description: NF3761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3761_high_15
NF3761_high_15
[»] chr5 (5 HSPs)
chr5 (1-460)||(28873272-28873731)
chr5 (1-239)||(28872042-28872286)
chr5 (235-460)||(9503928-9504153)
chr5 (3-105)||(2357666-2357774)
chr5 (1-49)||(3031459-3031507)
[»] chr2 (8 HSPs)
chr2 (235-460)||(21794119-21794344)
chr2 (181-460)||(5983655-5983938)
chr2 (181-458)||(45496684-45496961)
chr2 (181-458)||(45504426-45504703)
chr2 (3-133)||(5989408-5989545)
chr2 (1-49)||(4285054-4285102)
chr2 (3-49)||(5983453-5983499)
chr2 (168-206)||(31468947-31468985)
[»] chr6 (2 HSPs)
chr6 (181-460)||(7500998-7501277)
chr6 (1-49)||(369231-369279)
[»] chr4 (2 HSPs)
chr4 (235-460)||(53008545-53008770)
chr4 (286-460)||(16847497-16847671)
[»] chr8 (4 HSPs)
chr8 (181-455)||(11096350-11096625)
chr8 (3-104)||(14685324-14685431)
chr8 (342-451)||(15142145-15142254)
chr8 (181-276)||(14685521-14685616)
[»] chr7 (2 HSPs)
chr7 (1-244)||(44968595-44968843)
chr7 (3-133)||(35323996-35324133)
[»] scaffold0014 (3 HSPs)
scaffold0014 (272-460)||(61396-61584)
scaffold0014 (1-105)||(34404-34503)
scaffold0014 (169-269)||(34590-34690)
[»] chr3 (4 HSPs)
chr3 (180-246)||(12221455-12221523)
chr3 (3-49)||(27237263-27237309)
chr3 (85-140)||(12221591-12221647)
chr3 (3-49)||(12221719-12221765)
[»] chr1 (1 HSPs)
chr1 (215-278)||(9426855-9426918)


Alignment Details
Target: chr5 (Bit Score: 448; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Complemental strand, 28873731 - 28873272
Alignment:
Q  1 tgtgaagtaactaactcaagttacttgcacgtgaagttatgagtttgttttagttgttttgttgttacatcacttgatgtataaatacttcattgctctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28873731 tgtgaagtaactaactcaagttacttgcacgtgaagttatgagtttgttttagttgttttgttgttacatcacttgatgtataaatacttcattgctctt 28873632  T
Q  101 gtaaagagtaagttcaatttcatcaataaaatttacaagttttattttcatctctctctcaaaacaagaaaccctaatatcatcttcttcaattgtacac 200  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28873631 gtaaagagtaagtttaatttcatcaataaaatttacaagttttattttcatctctctctcaaaacaagaaaccctaatatcatcttcttcaattgtacac 28873532  T
Q  201 agtttttgtgttgtttttcattcaatctttacatattgttccataaaattggtataacaaagcctggttcattcattgttgttagagaattcgtgaagaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28873531 agtttttgtgttgtttttcattcaatctttacatattgttccataaaattggtataacaaagcctggttcattcattgttgttagagaattcgtgaagaa 28873432  T
Q  301 tggtaactcacaacaacaatattcctgcacatctacctgtttttgaaggcaagaactttgatcattggatcgtaaagatgaaggtgatctttaggttcca 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  28873431 tggtaactcacaacaacaatattcctgcacatctacctgtttttgaaggcaagaactttgatcattggatcgtaaagatgaaggcgatcttcaggttcca 28873332  T
Q  401 ggatatacttgaagttgtgaatgaaggtatagcaacactagcagcgaatgcaactgatgt 460  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28873331 ggatatacttgaagttgtgaatgaaggtatagcaacactagcagcgaatgcaactgatgt 28873272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 28872286 - 28872042
Alignment:
Q  1 tgtgaagtaactaactcaagttacttgcacgtgaagttatgagtttgttttagttgttttgttgttacatcacttgatgtataaatacttcattgctctt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||  |||||||||||||||||||||||||    
T  28872286 tgtgaagtaactaactcaagttacttgcacgtgaagttatgagtttgttttagttgttt---tgttacatcac--gatgtataaatacttcattgctctt 28872192  T
Q  101 gtaaagagtaagttcaatttcatcaataaaatttacaagttttattttc----atctctctctcaaaaca---------agaaaccctaatatcatcttc 187  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||     ||||||||||||||||         ||||||||||||| |||||||    
T  28872191 gtaaatagtaagttcaattt-atcaataaaatttacaagttttattttcgtctctctctctctcaaaacaagaaaccctagaaaccctaataccatcttc 28872093  T
Q  188 ttcaattgtacacagtttttgtgttgtttttcattcaatctttacatattgt 239  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||| |||||    
T  28872092 ttcaattgtacac-gtttttgtgttgtttttcatttaatctttacacattgt 28872042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 235 - 460
Target Start/End: Original strand, 9503928 - 9504153
Alignment:
Q  235 attgttccataaaattggtataacaaagcctggttcattcattgttgttagagaattcgtgaagaatggtaactcacaacaacaatattcctgcacatct 334  Q
    |||||||||| |||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||| |||| | ||||||||||||| ||| |||||    
T  9503928 attgttccatcaaattggtataacagagcctggttcgttcatcgttgttagagaattcgtgaagaatggcaacttataacaacaatattcttgcgcatct 9504027  T
Q  335 acctgtttttgaaggcaagaactttgatcattggatcgtaaagatgaaggtgatctttaggttccaggatatacttgaagttgtgaatgaaggtatagca 434  Q
    |||  | |||||||| |||||||||||| | |||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||| ||    
T  9504028 accaatctttgaaggaaagaactttgattaatggatcgtgaagatgaaggtgatcttcaggttccaggatgtacttgaagttgtgaatgaagggatacca 9504127  T
Q  435 acactagcagcgaatgcaactgatgt 460  Q
     |||| ||||| ||||||||||||||    
T  9504128 gcactggcagcaaatgcaactgatgt 9504153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 105
Target Start/End: Complemental strand, 2357774 - 2357666
Alignment:
Q  3 tgaagtaactaactcaagttacttgcacgtgaagttatgagtttgtttt--agttgttt----tgttgttacatcacttgatgtataaatacttcattgc 96  Q
    ||||||||||||||||||||||||||| ||||||| || || |||||    | ||||||    | |||||||||||||||||||||| ||||||||||      
T  2357774 tgaagtaactaactcaagttacttgcatgtgaagtaataagcttgttaggaatttgtttgaggttttgttacatcacttgatgtatacatacttcattat 2357675  T
Q  97 tcttgtaaa 105  Q
    |||||||||    
T  2357674 tcttgtaaa 2357666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 3031459 - 3031507
Alignment:
Q  1 tgtgaagtaactaactcaagttacttgcacgtgaagttatgagtttgtt 49  Q
    ||||||||||||||||   |||||||||||||||||||| |||||||||    
T  3031459 tgtgaagtaactaactattgttacttgcacgtgaagttaagagtttgtt 3031507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 146; Significance: 1e-76; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 235 - 460
Target Start/End: Complemental strand, 21794344 - 21794119
Alignment:
Q  235 attgttccataaaattggtataacaaagcctggttcattcattgttgttagagaattcgtgaagaatggtaactcacaacaacaatattcctgcacatct 334  Q
    |||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||| |||||| | |||||    
T  21794344 attgttccatcaaattggtataacagagcctggttcgttcattgttgttagagaattcgtgaagaatggcaactcataacaacaacattcctacgcatct 21794245  T
Q  335 acctgtttttgaaggcaagaactttgatcattggatcgtaaagatgaaggtgatctttaggttccaggatatacttgaagttgtgaatgaaggtatagca 434  Q
    |||  | ||||||| ||||||||||||||| |||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||| ||    
T  21794244 accaatctttgaagacaagaactttgatcaatggatcgtgaagatgaaggtgatcttcaggttccaggatgtacttgaagttgtgaatgaagggatacca 21794145  T
Q  435 acactagcagcgaatgcaactgatgt 460  Q
     |||| ||||||||||||||||||||    
T  21794144 gcactggcagcgaatgcaactgatgt 21794119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 181 - 460
Target Start/End: Original strand, 5983655 - 5983938
Alignment:
Q  181 catcttcttcaattgtacacagttttt-gtgttgtttttcattcaatctttacatattgttccataaaattggtataacaaagcctggttcattcattgt 279  Q
    ||||||||||||||| ||||| ||||  |||||| ||| |||||||| || | | |||| ||||| ||||||||||| || |||||||||| ||||||||    
T  5983655 catcttcttcaattgaacacaattttaagtgttggttt-cattcaattttcatacattgctccatcaaattggtatagcagagcctggttcgttcattgt 5983753  T
Q  280 tgttagagaattcgtgaagaat----ggtaactcacaacaacaatattcctgcacatctacctgtttttgaaggcaagaactttgatcattggatcgtaa 375  Q
    ||||||| ||||||||||||||    || |||||| ||||||||||||| ||| |||||||| || ||||||||||||||||||||||| |||||||| |    
T  5983754 tgttagaaaattcgtgaagaatatatggcaactcataacaacaatattcttgcgcatctaccagtctttgaaggcaagaactttgatcaatggatcgtga 5983853  T
Q  376 agatgaaggtgatctttaggttccaggatatacttgaagttgtgaatgaaggtatagcaacactagcagcgaatgcaactgatgt 460  Q
    | ||||| |||||||| || ||||||||| |||||||||||||||||||||| ||| || |||| ||||||||||||||||||||    
T  5983854 aaatgaatgtgatcttcagattccaggatgtacttgaagttgtgaatgaagggataccagcactggcagcgaatgcaactgatgt 5983938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 181 - 458
Target Start/End: Complemental strand, 45496961 - 45496684
Alignment:
Q  181 catcttcttcaattgtacacagttttt-gtgttgtttttcattcaatctttacatattgttccataaaattggtataacaaagcctggttcattcattgt 279  Q
    ||||||||||||||| || |||||||  |||||||||| ||||| |  || | | |||||||||| |||||||||||  | |||||||||  ||||||||    
T  45496961 catcttcttcaattgaactcagttttaagtgttgtttt-cattctaatttcatacattgttccatcaaattggtatagtagagcctggtttgttcattgt 45496863  T
Q  280 tgttagagaattcgtgaagaatggtaactcacaacaacaatattcctgcacatctacctgtttttgaaggcaagaactttgatcattggatcgtaaagat 379  Q
    |||||||||||| ||||||||||| |||||| ||||||||||||||||| ||||||||  | ||||||||||||||||||||||| || || || || ||    
T  45496862 tgttagagaatttgtgaagaatggcaactcataacaacaatattcctgcgcatctaccaatatttgaaggcaagaactttgatcaatgcatagtgaatat 45496763  T
Q  380 gaaggtgatctttaggttccaggatatacttgaagttgtgaatgaaggtatagcaacactagcagcgaatgcaactgat 458  Q
    |||||||||||| |||||||| ||| ||||||||||||||| |||| | ||| || |||| |||||||||| |||||||    
T  45496762 gaaggtgatcttcaggttccaagatgtacttgaagttgtgattgaaaggataccagcactggcagcgaatgtaactgat 45496684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 181 - 458
Target Start/End: Complemental strand, 45504703 - 45504426
Alignment:
Q  181 catcttcttcaattgtacacagttttt-gtgttgtttttcattcaatctttacatattgttccataaaattggtataacaaagcctggttcattcattgt 279  Q
    ||||||||||||||| || |||||||  |||||||||| ||||| |  || | | |||||||||| |||||||||||  | |||||||||  ||||||||    
T  45504703 catcttcttcaattgaactcagttttaagtgttgtttt-cattctaatttcatacattgttccatcaaattggtatagtagagcctggtttgttcattgt 45504605  T
Q  280 tgttagagaattcgtgaagaatggtaactcacaacaacaatattcctgcacatctacctgtttttgaaggcaagaactttgatcattggatcgtaaagat 379  Q
    |||||||||||| ||||||||||| |||||| ||||||||||||||||| ||||||||  | ||||||||||||||||||||||| || || || || ||    
T  45504604 tgttagagaatttgtgaagaatggcaactcataacaacaatattcctgcgcatctaccaatatttgaaggcaagaactttgatcaatgcatagtgaatat 45504505  T
Q  380 gaaggtgatctttaggttccaggatatacttgaagttgtgaatgaaggtatagcaacactagcagcgaatgcaactgat 458  Q
    |||||||||||| |||||||| ||| ||||||||||||||| |||| | ||| || |||| |||||||||| |||||||    
T  45504504 gaaggtgatcttcaggttccaagatgtacttgaagttgtgattgaaaggataccagcactggcagcgaatgtaactgat 45504426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 133
Target Start/End: Original strand, 5989408 - 5989545
Alignment:
Q  3 tgaagtaactaactcaagttacttgcacgtgaagttatgagtttgtttt-agtt-gttttg-----ttgttacatcacttgatgtataaatacttcattg 95  Q
    ||||||||||||||||||||||||||| ||||||| || ||||||||   |||| |||||      |||||||||||||||||||||| |||| |||||     
T  5989408 tgaagtaactaactcaagttacttgcatgtgaagtaataagtttgttaggagtttgttttcagattttgttacatcacttgatgtatatatacctcatta 5989507  T
Q  96 ctcttgtaaagagtaagttcaatttcatcaataaaatt 133  Q
    |||||||||| ||| | | |||||   |||||||||||    
T  5989508 ctcttgtaaatagttattccaattcattcaataaaatt 5989545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 4285054 - 4285102
Alignment:
Q  1 tgtgaagtaactaactcaagttacttgcacgtgaagttatgagtttgtt 49  Q
    ||||||||||||||||   |||||||||||||||||||| |||||||||    
T  4285054 tgtgaagtaactaactattgttacttgcacgtgaagttaagagtttgtt 4285102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 5983453 - 5983499
Alignment:
Q  3 tgaagtaactaactcaagttacttgcacgtgaagttatgagtttgtt 49  Q
    |||||||||||| |||||||||||||| ||||||| || ||||||||    
T  5983453 tgaagtaactaaatcaagttacttgcatgtgaagtaataagtttgtt 5983499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 206
Target Start/End: Complemental strand, 31468985 - 31468947
Alignment:
Q  168 gaaaccctaatatcatcttcttcaattgtacacagtttt 206  Q
    ||||||||||| |||||||||||||||| ||||||||||    
T  31468985 gaaaccctaatctcatcttcttcaattgaacacagtttt 31468947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 145; Significance: 4e-76; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 181 - 460
Target Start/End: Complemental strand, 7501277 - 7500998
Alignment:
Q  181 catcttcttcaattgtacacagtttttg-tgttgtttttcattcaatctttacatattgttccataaaattggtataacaaagcctggttcattcattgt 279  Q
    ||||||||||||||| |||||||||| | ||||| ||| ||||| |  || | | |||||||||| |||||||||||||| |||||||||| ||||||||    
T  7501277 catcttcttcaattgaacacagttttaggtgttggttt-cattctaatttcatacattgttccatcaaattggtataacagagcctggttcgttcattgt 7501179  T
Q  280 tgttagagaattcgtgaagaatggtaactcacaacaacaatattcctgcacatctacctgtttttgaaggcaagaactttgatcattggatcgtaaagat 379  Q
    |||||||||||||||||||||||| |||||| ||||| ||||||||||| ||||||||  | ||||||||||||||||||||||| |||||||| |||||    
T  7501178 tgttagagaattcgtgaagaatggcaactcataacaataatattcctgcgcatctaccaatctttgaaggcaagaactttgatcaatggatcgtgaagat 7501079  T
Q  380 gaaggtgatctttaggttccaggatatacttgaagttgtgaatgaaggtatagcaacactagcagcgaatgcaactgatgt 460  Q
    |||||||||||| ||| |||||||| |||||||||||||||||||||| ||  |  |||| ||||||||||||||||||||    
T  7501078 gaaggtgatcttcagggtccaggatgtacttgaagttgtgaatgaagggattccggcactggcagcgaatgcaactgatgt 7500998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 369279 - 369231
Alignment:
Q  1 tgtgaagtaactaactcaagttacttgcacgtgaagttatgagtttgtt 49  Q
    ||||||||||||||||   |||||||||||||||||||| |||||||||    
T  369279 tgtgaagtaactaactattgttacttgcacgtgaagttaagagtttgtt 369231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 235 - 460
Target Start/End: Original strand, 53008545 - 53008770
Alignment:
Q  235 attgttccataaaattggtataacaaagcctggttcattcattgttgttagagaattcgtgaagaatggtaactcacaacaacaatattcctgcacatct 334  Q
    |||||||||| ||||||||||| || || ||||||| |||||||||||||||||||||||||||||||  |||||| |||| |||||||||||| |||||    
T  53008545 attgttccatcaaattggtatagcagagtctggttcgttcattgttgttagagaattcgtgaagaatgtcaactcataacagcaatattcctgcgcatct 53008644  T
Q  335 acctgtttttgaaggcaagaactttgatcattggatcgtaaagatgaaggtgatctttaggttccaggatatacttgaagttgtgaatgaaggtatagca 434  Q
    |||  | ||||||||||||||||||||||| |||| ||| ||||||||||||||||| |||||||||||| || ||||||||||||||||||| ||| ||    
T  53008645 accaatctttgaaggcaagaactttgatcaatggaccgtgaagatgaaggtgatcttcaggttccaggatgtatttgaagttgtgaatgaagggatacca 53008744  T
Q  435 acactagcagcgaatgcaactgatgt 460  Q
     |||| ||||||||||||||||||||    
T  53008745 gcactggcagcgaatgcaactgatgt 53008770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 286 - 460
Target Start/End: Complemental strand, 16847671 - 16847497
Alignment:
Q  286 agaattcgtgaagaatggtaactcacaacaacaatattcctgcacatctacctgtttttgaaggcaagaactttgatcattggatcgtaaagatgaaggt 385  Q
    |||||||||||||||| | |||||| ||||||||||||||||| |||||||   | ||||||||||||||||||||||| |||||| | |||||||||||    
T  16847671 agaattcgtgaagaatagcaactcataacaacaatattcctgcgcatctactaatctttgaaggcaagaactttgatcaatggatcatgaagatgaaggt 16847572  T
Q  386 gatctttaggttccaggatatacttgaagttgtgaatgaaggtatagcaacactagcagcgaatgcaactgatgt 460  Q
    |||||| | |||||||| | ||| |||||||||||||||||| ||| || |||| | ||||||||||||||||||    
T  16847571 gatcttcaagttccaggttgtacctgaagttgtgaatgaagggataccagcactggtagcgaatgcaactgatgt 16847497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 129; Significance: 1e-66; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 181 - 455
Target Start/End: Original strand, 11096350 - 11096625
Alignment:
Q  181 catcttcttcaattgtacacagttttt-gtgttgtttttcattcaatctttacatattgttccataaaattggtataacaaagcctggttcattcattgt 279  Q
    ||||||||||||||| ||||||||||  |||||| ||| ||||| |  || | | |||||||||| |||||||||||||| ||||| |||| ||||||||    
T  11096350 catcttcttcaattgaacacagttttaagtgttggttt-cattctaatttcatacattgttccatcaaattggtataacagagcctagttcgttcattgt 11096448  T
Q  280 tgttagagaattcgtgaagaatggtaactcacaacaacaatattcctgcacatctacctgtttttgaaggcaagaactttgatcattggatcgtaaagat 379  Q
    |||||||||||||||||||||||  |||| | ||||||||||||||||| ||||||||  | ||||||||||||||||||||||| |||||||| |||||    
T  11096449 tgttagagaattcgtgaagaatgacaactgataacaacaatattcctgcgcatctaccaatctttgaaggcaagaactttgatcaatggatcgtgaagat 11096548  T
Q  380 gaaggtgatctttaggttccaggatatacttgaagttgtg-aatgaaggtatagcaacactagcagcgaatgcaact 455  Q
    ||| |||||||| |||||||||||| |||||||||||||| |||||||| ||| || ||||  ||||||||||||||    
T  11096549 gaaagtgatcttcaggttccaggatgtacttgaagttgtgaaatgaagggataccagcactgacagcgaatgcaact 11096625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 104
Target Start/End: Original strand, 14685324 - 14685431
Alignment:
Q  3 tgaagtaactaactcaagttacttgcacgtgaagttatgagtttgtt--ttagttgttt----tgttgttacatcacttgatgtataaatacttcattgc 96  Q
    ||||||||||||||||||||||||||| ||||||| || ||||||||    | ||||||    | |||||||||||||||||||||| |||| ||||| |    
T  14685324 tgaagtaactaactcaagttacttgcatgtgaagtgataagtttgttaggaatttgtttcaggttttgttacatcacttgatgtatatatacgtcattac 14685423  T
Q  97 tcttgtaa 104  Q
    ||||||||    
T  14685424 tcttgtaa 14685431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 342 - 451
Target Start/End: Complemental strand, 15142254 - 15142145
Alignment:
Q  342 tttgaaggcaagaactttgatcattggatcgtaaagatgaaggtgatctttaggttccaggatatacttgaagttgtgaatgaaggtatagcaacactag 441  Q
    |||||||||||||| |  ||||| |||||||| ||||||||||| ||||  ||||| |||||| | |||||||| ||||||||  || || || ||||||    
T  15142254 tttgaaggcaagaattacgatcaatggatcgtgaagatgaaggttatctgcaggtttcaggatgttcttgaagtagtgaatgatagtgtaccagcactag 15142155  T
Q  442 cagcgaatgc 451  Q
    || |||||||    
T  15142154 catcgaatgc 15142145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 276
Target Start/End: Original strand, 14685521 - 14685616
Alignment:
Q  181 catcttcttcaattgtacacagttttt-gtgttgtttttcattcaatctttacatattgttccataaaattggtataacaaagcctggttcattcat 276  Q
    ||||||||||||||| ||||||||||  |||||| ||| |||||||| || | | |||||| ||| ||||||||||| || |||||||||| |||||    
T  14685521 catcttcttcaattgaacacagttttaagtgttggttt-cattcaattttcatacattgtttcatcaaattggtatagcagagcctggttcgttcat 14685616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 123; Significance: 5e-63; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 44968843 - 44968595
Alignment:
Q  1 tgtgaagtaactaactcaagttacttgcacgtgaagttatgagtttgttttagttgttttgttgttacatcacttgatgtataaatacttcattgctctt 100  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||    ||||||||||  |||||||||||||||||||| ||||||    
T  44968843 tgtgaagtaactaactcaagtttcttgcacgtaaagttatgagtttgttctagttgt----ttgttacatcgtttgatgtataaatacttcatagctctt 44968748  T
Q  101 gtaaagagtaagttcaatttcatcaataaaatttacaagttttattttca--tctctctctcaaaa---------caagaaaccctaatatcatcttctt 189  Q
    ||||| || |||||||| ||||| ||||||||||||||||||||||||||  ||||||||||||||         | |||||||||||||  ||||||||    
T  44968747 gtaaatagcaagttcaa-ttcataaataaaatttacaagttttattttcatctctctctctcaaaaatagaaaccctagaaaccctaatactatcttctt 44968649  T
Q  190 caattgtacacagtttttgtgttgtttttcattcaatctttacatattgttccat 244  Q
    |||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||    
T  44968648 caattgtacacagtttttgtgttg-ttttcattcaacctttacacattgttccat 44968595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 3 - 133
Target Start/End: Complemental strand, 35324133 - 35323996
Alignment:
Q  3 tgaagtaactaactcaagttacttgcacgtgaagttatgagtttgtttt-agtt-gttttg-----ttgttacatcacttgatgtataaatacttcattg 95  Q
    ||||||||||||||||||||||||||| ||||||| || ||||||||   |||| |||||      |||||||||||||||||||||| |||| |||||     
T  35324133 tgaagtaactaactcaagttacttgcatgtgaagtaataagtttgttaggagtttgttttcagattttgttacatcacttgatgtatatatacctcatta 35324034  T
Q  96 ctcttgtaaagagtaagttcaatttcatcaataaaatt 133  Q
    |||||||||| ||||| |||||||   |||||||||||    
T  35324033 ctcttgtaaatagtaatttcaattcattcaataaaatt 35323996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 101; Significance: 7e-50; HSPs: 3)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 272 - 460
Target Start/End: Original strand, 61396 - 61584
Alignment:
Q  272 ttcattgttgttagagaattcgtgaagaatggtaactcacaacaacaatattcctgcacatctacctgtttttgaaggcaagaactttgatcattggatc 371  Q
    ||||||||||||||| |||| |||||||||||||||||| |||| |||||||| ||| | |||||| ||||||||||| ||||| |||||||| |||||     
T  61396 ttcattgttgttagaaaatttgtgaagaatggtaactcataacagcaatattcttgcgcttctaccagtttttgaaggaaagaattttgatcaatggatt 61495  T
Q  372 gtaaagatgaaggtgatctttaggttccaggatatacttgaagttgtgaatgaaggtatagcaacactagcagcgaatgcaactgatgt 460  Q
     |  |||||||||||||||| |||||||||||| || |||||| | |||||||||| ||| ||||||||||||||||||||||||||||    
T  61496 atggagatgaaggtgatcttaaggttccaggatgtagttgaagctatgaatgaaggcataccaacactagcagcgaatgcaactgatgt 61584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 34404 - 34503
Alignment:
Q  1 tgtgaagtaactaactcaagttacttgcacgtgaagttatgagtttgttttagttgttttgttgttacatcacttgatgtataaatacttcattgctctt 100  Q
    |||||||||||||||| |||||||||| | ||||||| |||||||||  ||||  |||   ||||||||||||||||||||||||||||| || ||| ||    
T  34404 tgtgaagtaactaactaaagttacttgtatgtgaagtaatgagtttg--ttaggagtt---ttgttacatcacttgatgtataaatactttatagctatt 34498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 169 - 269
Target Start/End: Original strand, 34590 - 34690
Alignment:
Q  169 aaaccctaatatcatcttcttcaattgtacacagtttt-tgtgttgtttttcattcaatctttacatattgttccataaaattggtataacaaagcctgg 267  Q
    |||||||||| |||||||||||||||| ||||||||||  ||||||  |||||||||||||||| | | |||||||| ||||||||||| || || ||||    
T  34590 aaaccctaatctcatcttcttcaattgaacacagttttaagtgttg-gtttcattcaatctttatacactgttccatcaaattggtatagcagagtctgg 34688  T
Q  268 tt 269  Q
    ||    
T  34689 tt 34690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 180 - 246
Target Start/End: Complemental strand, 12221523 - 12221455
Alignment:
Q  180 tcatcttcttcaatt--gtacacagtttttgtgttgtttttcattcaatctttacatattgttccataa 246  Q
    |||||||||||||||  ||| |||||||| |||||| ||||||||||||||||||||||||||| ||||    
T  12221523 tcatcttcttcaattttgtatacagttttagtgttggttttcattcaatctttacatattgttctataa 12221455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 27237263 - 27237309
Alignment:
Q  3 tgaagtaactaactcaagttacttgcacgtgaagttatgagtttgtt 49  Q
    ||||||||||||||||||||||||||| ||||||| || ||||||||    
T  27237263 tgaagtaactaactcaagttacttgcatgtgaagtaataagtttgtt 27237309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 140
Target Start/End: Complemental strand, 12221647 - 12221591
Alignment:
Q  85 atacttcattgctcttgtaaagagtaagttcaatttca-tcaataaaatttacaagt 140  Q
    |||||||||| |||||||||| | | |||||||||||| ||||||||||||||||||    
T  12221647 atacttcattactcttgtaaatacttagttcaatttcattcaataaaatttacaagt 12221591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 12221765 - 12221719
Alignment:
Q  3 tgaagtaactaactcaagttacttgcacgtgaagttatgagtttgtt 49  Q
    ||||||||||||||||||||||||||  | ||||| |||||||||||    
T  12221765 tgaagtaactaactcaagttacttgcgtgagaagtaatgagtttgtt 12221719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 215 - 278
Target Start/End: Original strand, 9426855 - 9426918
Alignment:
Q  215 ttttcattcaatctttacatattgttccataaaattggtataacaaagcctggttcattcattg 278  Q
    ||||||||||||||||| | |||||||||| ||||||||||| || || ||||||| |||||||    
T  9426855 ttttcattcaatctttagacattgttccatcaaattggtatagcagagtctggttccttcattg 9426918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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