View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3761_high_2 (Length: 638)
Name: NF3761_high_2
Description: NF3761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3761_high_2 |
 | |
|
| [»] scaffold0003 (2 HSPs) |
| | |
|
| [»] scaffold0902 (2 HSPs) |
| | |
|
| [»] scaffold0131 (1 HSPs) |
| | |
|
| [»] scaffold1801 (1 HSPs) |
| | |
|
| [»] scaffold1118 (2 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 13 - 456
Target Start/End: Complemental strand, 20421504 - 20421061
Alignment:
| Q |
13 |
aaaatcaaactatatcacagatcaactaatcctaaacaaaacaaatgaaacctttttcaatttctcagcaatggtttagagaaatccaaaatgcaaaaat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
20421504 |
aaaatcaaactatatcacagatcaactaatcctaaacaaaacaaatgaaacctttttcaatttctcagcaatggtttagagaaacccaaaatgcaaaaat |
20421405 |
T |
|
| Q |
113 |
acagaatttcattacaaagaaaccaaagaatcaacataagaacacacatattttgaaactttatcacaacacatgttcactctagtactatgccaatgtt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20421404 |
acagaatttcattacaaagaaaccaaagaatcaacataagaacacacatattttcaaactttatcacaacacatgttcactctagtactatgccaatgtt |
20421305 |
T |
|
| Q |
213 |
agaagacttcatcaattcccctggacctaaacactaagnnnnnnnntctataacaagaaaaattcaaatcagttactctgctgaaattcattttcatagt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20421304 |
agaagacttcatcaattcccctggacctaaacactaagaaaaaaaatctataacaagaaaaattcaaatcagttactctgctgaaattcattttcatagt |
20421205 |
T |
|
| Q |
313 |
gaaagtgattctgatcaaccaataaggatcaagttatcttctttttcacacggaaattgctaagcaagtaagcataaaaaccgaactcatatactaactg |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
20421204 |
gaaagtgattctgatcaaccaataaggatcaagttatcttctttttcacacagaaattgctaagcaagtaagcataaaaacggaactcatatactaactg |
20421105 |
T |
|
| Q |
413 |
aacacatatactttcctaaatccaaatttatacgtgaggataag |
456 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
20421104 |
aacacatatactttcctaaatccaaatttatatgtgaggataag |
20421061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 483 - 534
Target Start/End: Complemental strand, 20421006 - 20420955
Alignment:
| Q |
483 |
cacgaagctttgaaaaatgagcggaggtgtgggtgttgtatctaggggtgtt |
534 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20421006 |
cacgaagctttgaaaaatgagcggaggtgtgggtgttgtatctaggggtgtt |
20420955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 418
Target Start/End: Complemental strand, 20421040 - 20421005
Alignment:
| Q |
383 |
agcataaaaaccgaactcatatactaactgaacaca |
418 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |
|
|
| T |
20421040 |
agcataaaaacggaactcatatactaactgaacaca |
20421005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 13 - 455
Target Start/End: Original strand, 9884411 - 9884854
Alignment:
| Q |
13 |
aaaatcaaactatatcacagatcaactaatcctaaacaaaacaaatgaaacctttttcaatttctcagcaatggtttagagaaatccaaaatgcaaaaat |
112 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9884411 |
aaaatcaaaccatatcacagatcaactaatcctaaacaaaacaaatgaaacctttttcaatttctcagcaatggtttagagaaacccaaaatgcaaaaat |
9884510 |
T |
|
| Q |
113 |
acagaatttcattacaaagaaaccaaagaatcaacataagaacacacatattttgaaa-ctttatcacaacacatgttcactctagtactatgccaatgt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
9884511 |
acagaatttcattacaaagaaaccaaagaatcaacatacgaacacacatattatgaaagctttatcacagcacatgttcactctagtactaggccaatgt |
9884610 |
T |
|
| Q |
212 |
tagaagacttcatcaattcccctggacctaaacactaagnnnnnnnntctataacaagaaaaattcaaatcagttactctgctgaaattcattttcatag |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9884611 |
tagaagacttcatcaattcccctggacctaaacactaagaaaaaaaatctataacaagaaaaattcaaatcagttactctgctgaaattcattttcatag |
9884710 |
T |
|
| Q |
312 |
tgaaagtgattctgatcaaccaataaggatcaagttatcttctttttcacacggaaattgctaagcaagtaagcataaaaaccgaactcatatactaact |
411 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
9884711 |
tgaaagtgtttctgaccaaccaataaggatcaagttatcttctttttcacacagaaattgctaagcaagtaagcataaaaacagaattcatatactaact |
9884810 |
T |
|
| Q |
412 |
gaacacatatactttcctaaatccaaatttatacgtgaggataa |
455 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
9884811 |
gaacacatatactttcctaactccaaatttatatgtgaggataa |
9884854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 14316141 - 14316261
Alignment:
| Q |
13 |
aaaatcaaactatatcacagatcaactaatcctaaacaaaacaaatgaaacctttttcaatttctcagcaatggtttagagaaatccaaaatgcaaaaat |
112 |
Q |
| |
|
|||| ||||| ||| || ||||| |||||||| |||||| |||||||| ||||| ||||||| ||||||||||| ||||| || |||||||||||| |
|
|
| T |
14316141 |
aaaaccaaaccataacatagatcttctaatccttaacaaatcaaatgaactctttt-caatttcgtggcaatggtttaaagaaaccctaaatgcaaaaat |
14316239 |
T |
|
| Q |
113 |
acagaatttcattacaaagaaa |
134 |
Q |
| |
|
|| |||||| | ||||||||| |
|
|
| T |
14316240 |
actaaatttcctcacaaagaaa |
14316261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 14247683 - 14247731
Alignment:
| Q |
86 |
gtttagagaaatccaaaatgcaaaaatacagaatttcattacaaagaaa |
134 |
Q |
| |
|
||||||||||| || |||||||||||||| |||||||| ||||||||| |
|
|
| T |
14247683 |
gtttagagaaaccctaaatgcaaaaatactaaatttcatcacaaagaaa |
14247731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 154; Significance: 2e-81; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 13 - 308
Target Start/End: Complemental strand, 135337 - 135034
Alignment:
| Q |
13 |
aaaatcaaactatatcacagatcaactaatcctaaacaaaacaaatgaaacctttttcaatttctcagcaatggtttagagaaatccaaaa-tgc-aaaa |
110 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||| || ||||||||||||||||| |||||| ||| |||| |
|
|
| T |
135337 |
aaaatcaaaccatatcacagatcaactaatcctaaacaaaacaaattaa-cctttttcaatttgtcggcaatggtttagagaaacccaaaaatgcgaaaa |
135239 |
T |
|
| Q |
111 |
atacagaatttcattacaaagaaaccaaagaatcaacataagaacacacatattttgaaa-ctttatcacaacacatgttcactctagtactatgccaat |
209 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||||||| |||| ||||| |||| ||||| ||||||||||||||||||||| |||||| |
|
|
| T |
135238 |
atacagaatttcatcacaaagaaaccaaagaatcagcataagaacacacgtattatgaaagctttttcacagcacatgttcactctagtactaggccaat |
135139 |
T |
|
| Q |
210 |
gttagaagacttcatcaattcccctggacctaaacact------aagnnnnnnnntctataacaagaaaaattcaaatcagttactctgctgaaattcat |
303 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||| | || ||||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
135138 |
gttagaagacgtcatcaattcccctggacataaacagtaaaaaaaaaaaaaaaaatctataacaagaaaaatacaaaccagttactctgctgaaattcat |
135039 |
T |
|
| Q |
304 |
tttca |
308 |
Q |
| |
|
||||| |
|
|
| T |
135038 |
tttca |
135034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 11955047 - 11954993
Alignment:
| Q |
19 |
aaactatatcacagatcaactaatcctaaacaaaacaaatgaaacctttttcaat |
73 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11955047 |
aaaccatatcacagatcaactaatcctaaacaaaacaaatgaaacctttttcaat |
11954993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 478 - 514
Target Start/End: Original strand, 6036548 - 6036584
Alignment:
| Q |
478 |
cgagccacgaagctttgaaaaatgagcggaggtgtgg |
514 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6036548 |
cgagccacgaagctttgaaaaatgagcggaggtgtgg |
6036584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 2e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 15607294 - 15607059
Alignment:
| Q |
13 |
aaaatcaaactatatcacagatcaactaatcctaaacaaaacaaatgaaacctttttcaatttctcagcaatggtttagagaaatccaaaatgcaaaaat |
112 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||| || |||||||||| ||||||||||||| ||||| |||||||||| ||||||| | ||||| |
|
|
| T |
15607294 |
aaaatcaaaccatattacagatcaactaatcctaaactaagcaaatgaaacatttttcaatttcttggcaataatttagagaaaaccaaaatacgaaaat |
15607195 |
T |
|
| Q |
113 |
acagaatttcattacaaagaaaccaaagaatcaacataagaacacacatattttgaaactttatcacaacacatgttcactctagtactatgccaatgtt |
212 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||| |||||||||||| |||| ||| ||| | || ||||||| |||||||| | | |||||| |
|
|
| T |
15607194 |
acagaatttcatcacaaagaaaccaaagaatcagcatatcaacacacatattatgaa--tttttcaaagcatatgttcaatctagtacaaggacaatgtc |
15607097 |
T |
|
| Q |
213 |
agaagacttcatcaattcccctggacctaaacactaag |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
15607096 |
agaagacttcatcaattcccctggacctaaacagtaag |
15607059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 101; Significance: 1e-49; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 13 - 194
Target Start/End: Complemental strand, 112162 - 111987
Alignment:
| Q |
13 |
aaaatcaaactatatcacagatcaactaatcctaaacaaaacaaatgaaacctttttcaatttctcagcaatggtttagagaaatccaaaatgcaaaaat |
112 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||| | ||||||| |
|
|
| T |
112162 |
aaaatcaaaccatatcacatatcaactaatcctaaacaaaacaaattaaacctttttcaatttatcggcaatggtttagagaaacc-------caaaaat |
112070 |
T |
|
| Q |
113 |
acagaatttcattacaaagaaaccaaagaatcaacataagaacacacatattttgaaa-ctttatcacaacacatgttcactc |
194 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||||||| |||| ||||| |||| ||||| ||||||||||||| |
|
|
| T |
112069 |
acagaatttcatcacaaagaaaccaaagaatcagcataagaacacacgtattatgaaagctttttcacagcacatgttcactc |
111987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 195 - 308
Target Start/End: Complemental strand, 111962 - 111849
Alignment:
| Q |
195 |
tagtactatgccaatgttagaagacttcatcaattcccctggacctaaacactaagnnnnnnnntctataacaagaaaaattcaaatcagttactctgct |
294 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
111962 |
tagtactaggccaatgttagaagacttcatcaattcccctggacataaacaataaaaaaaataatctataacaagaaaaatacaaattagttactctgct |
111863 |
T |
|
| Q |
295 |
gaaattcattttca |
308 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
111862 |
gaaattcattttca |
111849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 13 - 223
Target Start/End: Original strand, 36909893 - 36910104
Alignment:
| Q |
13 |
aaaatcaaactatatcacagatcaactaatccta--aacaaaacaaatgaaacctttttcaatttctcagcaatggtttagagaaatccaaaatgcaaaa |
110 |
Q |
| |
|
|||| ||||| ||||||||||||| ||||||||| |||||||||||||||||| |||||||||||| ||||| ||||||| ||| |||||||| |||| |
|
|
| T |
36909893 |
aaaaccaaaccatatcacagatcacctaatcctataaacaaaacaaatgaaacccttttcaatttcttggcaatagtttagaaaaacccaaaatgtaaaa |
36909992 |
T |
|
| Q |
111 |
atacagaatttcattacaaagaaaccaaagaatcaacataagaacacacatattttgaaactttatcacaacacatgttcactctagtactatgccaatg |
210 |
Q |
| |
|
|||| |||||||| ||||||||||| |||| || | || |||||| | ||| || |||||| ||| ||| ||||||| ||||||||||||| |||| |
|
|
| T |
36909993 |
atactaaatttcatagcaaagaaaccatagaagcagcttataaacacagaaattatg-aactttttcaaaacgcatgttcgatctagtactatgcaaatg |
36910091 |
T |
|
| Q |
211 |
ttagaagacttca |
223 |
Q |
| |
|
| ||||||||| |
|
|
| T |
36910092 |
caataagacttca |
36910104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: scaffold0902
Description:
Target: scaffold0902; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 2089 - 2146
Alignment:
| Q |
193 |
tctagtactatgccaatgttagaagacttcatcaattcccctggacctaaacactaag |
250 |
Q |
| |
|
|||||||||| |||||||| ||||| |||||||||||||||| |||||||||| |||| |
|
|
| T |
2089 |
tctagtactaggccaatgtcagaagtcttcatcaattcccctagacctaaacagtaag |
2146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 80 - 142
Target Start/End: Original strand, 1991 - 2053
Alignment:
| Q |
80 |
gcaatggtttagagaaatccaaaatgcaaaaatacagaatttcattacaaagaaaccaaagaa |
142 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| | ||| |||| ||||| || |||||||| |
|
|
| T |
1991 |
gcaatggtttagagaaacccaaaatgcaaaaattctaaatatcatgacaaaaaacccaaagaa |
2053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0131 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0131
Description:
Target: scaffold0131; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 478 - 516
Target Start/End: Complemental strand, 11954 - 11916
Alignment:
| Q |
478 |
cgagccacgaagctttgaaaaatgagcggaggtgtgggt |
516 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11954 |
cgagtcacgaagctttgaaaaatgagcggaggtgtgggt |
11916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1801 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold1801
Description:
Target: scaffold1801; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 809 - 748
Alignment:
| Q |
81 |
caatggtttagagaaatccaaaatgcaaaaatacagaatttcattacaaagaaaccaaagaa |
142 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||| ||||| || ||| ||||||||||||| |
|
|
| T |
809 |
caatggtttagaaaaacccaaaatgcaaaaatactaaattttatcacagagaaaccaaagaa |
748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1118 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: scaffold1118
Description:
Target: scaffold1118; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 38 - 139
Target Start/End: Original strand, 2176 - 2278
Alignment:
| Q |
38 |
ctaatcctaaacaaaacaaatgaaacctttttcaatttctcagcaatggtttagagaaatccaaaatgcaaaaatac--agaatttcattacaaagaaac |
135 |
Q |
| |
|
|||||||||||| || |||||||| ||||| ||||||| |||||||||||||||| |||||||||||||||| |||||||| |||||||||| |
|
|
| T |
2176 |
ctaatcctaaacgaatcaaatgaactctttt-caatttcgtgacaatggtttagagaaacacaaaatgcaaaaatactataaatttcatcacaaagaaac |
2274 |
T |
|
| Q |
136 |
caaa |
139 |
Q |
| |
|
|||| |
|
|
| T |
2275 |
caaa |
2278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1118; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 204 - 240
Target Start/End: Original strand, 2309 - 2345
Alignment:
| Q |
204 |
gccaatgttagaagacttcatcaattcccctggacct |
240 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
2309 |
gccaatgtaagaagacttcatcaattcccctagacct |
2345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University