View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3761_high_24 (Length: 383)
Name: NF3761_high_24
Description: NF3761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3761_high_24 |
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| [»] scaffold0006 (1 HSPs) |
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| [»] scaffold0182 (1 HSPs) |
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Alignment Details
Target: scaffold0006 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 11 - 368
Target Start/End: Complemental strand, 275852 - 275509
Alignment:
| Q |
11 |
caaaggcctctcaattgttggaggaaggatcattaactaatgagagttataactttgcatgtcatgcactggaagaggccttgaaacaatgtgcattcct |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
275852 |
caaaggcctctcaattgttggaggaaggatcattaactaatgagagttataactttgcatgtcatgcactggaagaggccttgaaacaatgtgcattcct |
275753 |
T |
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| Q |
111 |
taaccgatccttaaaaaatagccaagaaaatagcaggaagagcactttgcttgacaagaaactacttgatcctcaagattcaaaaacaaaaggggcaccg |
210 |
Q |
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| T |
275752 |
taaccgatccttaaaaaatagccaagaaaatagcaggaagagcactttgcttgacaagaaactacttgatcctcaagattcaaaaacaaaaggggcaccg |
275653 |
T |
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| Q |
211 |
aaaagaataaagagcggcattgaaagaggtcgaaagagaaaatctactggtagcgtgaaaaaggttggaatttattattttatcaaacttcttaaatcaa |
310 |
Q |
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| T |
275652 |
aaaagaataaagagcggcattgaaagaggtcgaaagagaaaatctactggtagcgtgaaaaaggttggaatttattattttatcaaacttc--------- |
275562 |
T |
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| Q |
311 |
acttcttaacatattattatttaacatgatttctgattgttgtgatttttgttctgtg |
368 |
Q |
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| T |
275561 |
-----ttaacatattattatttaacatgatttctgattgttgtgatttttgttctgtg |
275509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 11 - 368
Target Start/End: Complemental strand, 28742 - 28399
Alignment:
| Q |
11 |
caaaggcctctcaattgttggaggaaggatcattaactaatgagagttataactttgcatgtcatgcactggaagaggccttgaaacaatgtgcattcct |
110 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28742 |
caaaggcctctcaattgttggaggaaggatcattaaccaatgagagttataactttgcatgtcatgcactggaagaggccttgaaacaatgtgcattcct |
28643 |
T |
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| Q |
111 |
taaccgatccttaaaaaatagccaagaaaatagcaggaagagcactttgcttgacaagaaactacttgatcctcaagattcaaaaacaaaaggggcaccg |
210 |
Q |
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| T |
28642 |
taaccgatccttaaaaaatagccaagaaaatagcaggaagagcactttgcttgacaagaaactacttgatcctcaagattcaaaaacaaaaggggcaccg |
28543 |
T |
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| Q |
211 |
aaaagaataaagagcggcattgaaagaggtcgaaagagaaaatctactggtagcgtgaaaaaggttggaatttattattttatcaaacttcttaaatcaa |
310 |
Q |
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| T |
28542 |
aaaagaataaagagcggcattgaaagaggtcgaaagagaaaatctactggtagcgtgaaaaaggttggaatttattattttatcaaacttc--------- |
28452 |
T |
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| Q |
311 |
acttcttaacatattattatttaacatgatttctgattgttgtgatttttgttctgtg |
368 |
Q |
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| T |
28451 |
-----ttaacatattattatttaacatgatttctgattgttgtgatttttgttctgtg |
28399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 11 - 368
Target Start/End: Complemental strand, 26396457 - 26396113
Alignment:
| Q |
11 |
caaaggcctctcaattgttggaggaaggatcattaactaatgagagttataactttgcatgtcatgcactggaagaggccttgaaacaatgtgcattcct |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26396457 |
caaaggcctctcaattgttggaggaaggatcattaactaatgagagttataactttgcatgtcatgcactggaagaggccttgaaacaatgtgcattcct |
26396358 |
T |
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| Q |
111 |
taaccgatccttaaaaaatagccaagaaaatagcaggaagagcactttgcttgacaagaaactacttgatcctcaagattcaaaaacaaaaggggcaccg |
210 |
Q |
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| T |
26396357 |
taaccgatccttaaaaaatagccaagaaaatagcaggaagagcactttgcttgacaagaaactacttgatcctcaagattcaaaaacaaaaggggcaccg |
26396258 |
T |
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| Q |
211 |
-aaaagaataaagagcggcattgaaagaggtcgaaagagaaaatctactggtagcgtgaaaaaggttggaatttattattttatcaaacttcttaaatca |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26396257 |
aaaaagaataaagagcggcattgaaagaggtcgaaagagaaaatctactggtagcgtgaaaaaggttggaatttattatttt--------------atca |
26396172 |
T |
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| Q |
310 |
aacttcttaacatattattatttaacatgatttctgattgttgtgatttttgttctgtg |
368 |
Q |
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| T |
26396171 |
aacttcttaacatattattatttaacatgatttctgattgttgtgatttttgttctgtg |
26396113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 250
Target Start/End: Original strand, 26460346 - 26460430
Alignment:
| Q |
166 |
aagaaactacttgatcctcaagattcaaaaacaaaaggggcaccgaaaagaataaagagcggcattgaaagaggtcgaaagagaa |
250 |
Q |
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|||||| ||||||||||| || |||| |||||||| || ||||||||||| ||||| || ||||| |||||||| ||||||| |
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| T |
26460346 |
aagaaattacttgatcctaaaccagcaaacacaaaaggagctccgaaaagaatcaagagtgggattgagagaggtcgtaagagaa |
26460430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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