View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3761_high_28 (Length: 331)
Name: NF3761_high_28
Description: NF3761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3761_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 13 - 153
Target Start/End: Original strand, 50468732 - 50468872
Alignment:
| Q |
13 |
aaaataaaatatagtgtataaatgtacacatcacctagtgatggaaattctttttatttccaatacaatctaattcattattgattttaattataactgc |
112 |
Q |
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| T |
50468732 |
aaaataaaatatagtgtataaatgtacacatcacctagtgatggaaattctttttatttccaatacaatctaattcattattgattttaattataactac |
50468831 |
T |
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| Q |
113 |
tatttttaattttctctttaccattaactattaatataact |
153 |
Q |
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| T |
50468832 |
tatttttaattttctctttaccattaactattaatataact |
50468872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 138 - 275
Target Start/End: Original strand, 50468890 - 50469024
Alignment:
| Q |
138 |
aactattaatataactgtatcttgatgatgatgtaagtgtatatttgtgataaggacccatatgaaaatacatacatactagtataatataaacttgttt |
237 |
Q |
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| T |
50468890 |
aactattaatataactgtatcttgatgatgatgtaagtgtatatttgtgataaggacccatatgaaaatacatacatac---tataatataaactttttt |
50468986 |
T |
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| Q |
238 |
atttatgttcaannnnnnnatacatttcaaaagaagaa |
275 |
Q |
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| T |
50468987 |
atttatgttcaatttttttatacatttcaaaagaagaa |
50469024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 313
Target Start/End: Original strand, 50469060 - 50469089
Alignment:
| Q |
284 |
aaagtaaatacatatccaaacccataaaca |
313 |
Q |
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| T |
50469060 |
aaagtaaatacatatccaaacccataaaca |
50469089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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