View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3761_high_3 (Length: 618)
Name: NF3761_high_3
Description: NF3761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3761_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 220 - 605
Target Start/End: Original strand, 33232595 - 33232992
Alignment:
| Q |
220 |
agcttcacataaaatttgatgtgcctaaaattgcatctaataaactcttaagtataattaagatgataaaaaactgcatgaataatttataaactaagct |
319 |
Q |
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| T |
33232595 |
agcttcacataaaatttgatgtgcctaaaattgcatctaataagctcttaagtataattaagatgataaaaaactgcatgaataatttataaactaagct |
33232694 |
T |
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| Q |
320 |
tacaattttcatttctaaacatttaatttatatttggaattttggattcacatttcatcaccgtcgccccatgattgtatgctttcccaccataaaaatt |
419 |
Q |
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| T |
33232695 |
tacaattttcatttctaaacatttaatttatatttggaattttggattcacatttcatcaccgtcgccccatgattgtatgctttcccaccataaaaatt |
33232794 |
T |
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| Q |
420 |
agaagttactattgatag------------cttcaacttcaacgtgaattttctttataatttcaaaatctcccatcatatatctagacactcaattttt |
507 |
Q |
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| T |
33232795 |
agaagttactattgatagcttcagcttcaacttcaacttcaacgtgaattttctttgtaatttcaaaatctcccatcatatatctagacactcgattttt |
33232894 |
T |
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| Q |
508 |
tatcgaatagtttagtgattataaattcatcttttaaaataaatagtgaaggtattaaaaatttgaacatcaatccctacatatataatataatgttc |
605 |
Q |
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| T |
33232895 |
tatcgagtagtttagtgattataaattcatcttttaagataaatagtgaaagtttcagaagttcgaacatcaatccctacatatataatataatgttc |
33232992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 33232424 - 33232607
Alignment:
| Q |
19 |
acaagcaactaaaataaaaatccaaaatttgaataatttaataaagtttgctataccaaggtagtttgacgttgtacacaacagatacataggaaaatca |
118 |
Q |
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| T |
33232424 |
acaagcaactaaaataaaaatccaaaatttgaataatttaataaagtttgctatgccaaggtagtttgacgttgtacacaacagatacataggaaaatca |
33232523 |
T |
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| Q |
119 |
tcactcatatagatatacgatatataataagacaaatatcataatgttattttatgtaaatgtcgtggtccagcttcacataaa |
202 |
Q |
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| T |
33232524 |
tcactcatatagatatacgatatataataagacaaatatcataatgttattttatgtaaatgtcgtggtccagcttcacataaa |
33232607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 503 - 545
Target Start/End: Original strand, 44976591 - 44976633
Alignment:
| Q |
503 |
ttttttatcgaatagtttagtgattataaattcatcttttaaa |
545 |
Q |
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| T |
44976591 |
ttttttatcaaatagtttagtagttataaattcatcttttaaa |
44976633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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