View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3761_high_40 (Length: 249)
Name: NF3761_high_40
Description: NF3761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3761_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 5 - 140
Target Start/End: Original strand, 6744487 - 6744622
Alignment:
| Q |
5 |
gaattgttcacagcaatagtgaacatagttaactatgttactctatttcaaatatttatcaattgcagcccaatcacaacaagattttttgttgaacgca |
104 |
Q |
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| T |
6744487 |
gaattgttcacagcaatagtgaacatagttaactatgttactctatttcaaatatttatcaattgcagcccaatcacaacaagattttttgttgaacgca |
6744586 |
T |
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| Q |
105 |
ttgttacaaatacctgataaaattgaagctaactat |
140 |
Q |
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| T |
6744587 |
ttgttacaaatacctgataaaattgaagctaactat |
6744622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 5 - 140
Target Start/End: Original strand, 4433886 - 4434021
Alignment:
| Q |
5 |
gaattgttcacagcaatagtgaacatagttaactatgttactctatttcaaatatttatcaattgcagcccaatcacaacaagattttttgttgaacgca |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4433886 |
gaattgttcacagcaatagtgaacatagttaactatgttactctatttcaaatatttatcaattgcagcccaatcacaacaagattttttgttgaacgca |
4433985 |
T |
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| Q |
105 |
ttgttacaaatacctgataaaattgaagctaactat |
140 |
Q |
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| T |
4433986 |
ttgttacagatacctgataaaattgaagctaactat |
4434021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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