View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3761_high_47 (Length: 236)
Name: NF3761_high_47
Description: NF3761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3761_high_47 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 31330696 - 31330471
Alignment:
| Q |
1 |
gataggttctttgttcagaatgtttgtcatgaagttgggattcaccagcaccaattgagagtgttcatannnnnnngcatgccctaaaggaatttgaatg |
100 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31330696 |
gataggttctttgttcagcatgtttgtcatgaagttgggattcaccagcaccaattgagagtgttcatatttttttgcatgccctaaaggaatttgaatg |
31330597 |
T |
|
| Q |
101 |
aactttgaattttggtgcttaagctccttcacacaagtctccaatttttctatcatactgccaatatctgtactactgatcaccaattgttgtgaatcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31330596 |
aactttgaattttggtgcttaagctccttcacacaagtctccaatttttctatcatactgccaatatctgtactactgatcaccaattgttgtgaatcca |
31330497 |
T |
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| Q |
201 |
tgctattgatagcacttgaagtatta |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
31330496 |
tgctattgatagcacttgaagtatta |
31330471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 31379478 - 31379253
Alignment:
| Q |
1 |
gataggttctttgttcagaatgtttgtcatgaagttgggattcaccagcaccaattgagagtgttcatannnnnnngcatgccctaaaggaatttgaatg |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31379478 |
gataggttctttgttcagcatgtttgtcatgaagttgggattcaccagcaccaattgagagtgttcatatttttttgcatgccctaaaggaatttgaatg |
31379379 |
T |
|
| Q |
101 |
aactttgaattttggtgcttaagctccttcacacaagtctccaatttttctatcatactgccaatatctgtactactgatcaccaattgttgtgaatcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31379378 |
aactttgaattttggtgcttaagctccttcacacaagtctccaatttttctatcatactgccaatatctgtactactgatcaccaattgttgtgaatcca |
31379279 |
T |
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| Q |
201 |
tgctattgatagcacttgaagtatta |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
31379278 |
tgctattgatagcacttgaagtatta |
31379253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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