View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3761_high_49 (Length: 227)
Name: NF3761_high_49
Description: NF3761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3761_high_49 |
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| [»] chr7 (4 HSPs) |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 31832233 - 31832454
Alignment:
| Q |
6 |
aagagtttatcacataggggcttgtgcataagttatttttgtaacaaaatataaaataaagccaaacaaagtttttcgtataaactctctcaaagagtat |
105 |
Q |
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| T |
31832233 |
aagagtttatcacataggggcttgtgcataagttatttttgtaacaaaatataaaataaagccaaacaaagtttttcgtataaactctctcaaacagtat |
31832332 |
T |
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| Q |
106 |
cacaaatacttatgcaagtagaaaaattctcaaatgaaaactgttaattaagccaagcttgcaaaaggacgtatactggcgcaaaacatgataacaatat |
205 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
31832333 |
cacaaatacttatgcaagtagataaattctcaaatgaaaactgttaattaagccaagcttgcaaaaggacgtatactagggcaaaacatgataacaatat |
31832432 |
T |
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| Q |
206 |
cctaatggtggcacaaactcaa |
227 |
Q |
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|||||||||||||||||||||| |
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| T |
31832433 |
cctaatggtggcacaaactcaa |
31832454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 30751439 - 30751500
Alignment:
| Q |
10 |
gtttatcacataggggcttgtgcataagttatttttgtaacaaaatataaaataaagccaaa |
71 |
Q |
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| T |
30751439 |
gtttatcatataagtgcttgtgaataaactatttttgtaacaaaatataaaataaagtcaaa |
30751500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 2048028 - 2047987
Alignment:
| Q |
86 |
taaactctctcaaagagtatcacaaatacttatgcaagtaga |
127 |
Q |
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| T |
2048028 |
taaactctctcaaagagtatcacaaatgtttatgctagtaga |
2047987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 991695 - 991755
Alignment:
| Q |
12 |
ttatcacataggggcttgtgcataagttatttttgtaacaaaatataaaataaagccaaac |
72 |
Q |
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|||||||||| | |||| |||||||||||||| | || |||||||||||||||| ||||| |
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| T |
991695 |
ttatcacataagtgcttatgcataagttatttctctactaaaatataaaataaagacaaac |
991755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 72
Target Start/End: Original strand, 32975923 - 32975962
Alignment:
| Q |
33 |
ataagttatttttgtaacaaaatataaaataaagccaaac |
72 |
Q |
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| T |
32975923 |
ataagttatttctgtaacaaaatataaaataaagtcaaac |
32975962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 72
Target Start/End: Original strand, 3757993 - 3758032
Alignment:
| Q |
33 |
ataagttatttttgtaacaaaatataaaataaagccaaac |
72 |
Q |
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| T |
3757993 |
ataagctatttttgtaacaaaatataaaataaagtcaaac |
3758032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 66
Target Start/End: Complemental strand, 15866799 - 15866760
Alignment:
| Q |
27 |
ttgtgcataagttatttttgtaacaaaatataaaataaag |
66 |
Q |
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| T |
15866799 |
ttgtgtataagttatttttgtaacaaaatgtaaaataaag |
15866760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 44216864 - 44216896
Alignment:
| Q |
33 |
ataagttatttttgtaacaaaatataaaataaa |
65 |
Q |
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| T |
44216864 |
ataagttatttttataacaaaatataaaataaa |
44216896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 71
Target Start/End: Complemental strand, 41620416 - 41620378
Alignment:
| Q |
33 |
ataagttatttttgtaacaaaatataaaataaagccaaa |
71 |
Q |
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|||||||||||||||||||||| ||||||||||| |||| |
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| T |
41620416 |
ataagttatttttgtaacaaaagataaaataaagtcaaa |
41620378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 51513 - 51546
Alignment:
| Q |
33 |
ataagttatttttgtaacaaaatataaaataaag |
66 |
Q |
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| T |
51513 |
ataagttatttttataacaaaatataaaataaag |
51546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 122
Target Start/End: Complemental strand, 32059345 - 32059308
Alignment:
| Q |
85 |
ataaactctctcaaagagtatcacaaatacttatgcaa |
122 |
Q |
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| T |
32059345 |
ataaactctctcaaatagtatcacaagtacttatgcaa |
32059308 |
T |
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