View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3761_high_5 (Length: 603)
Name: NF3761_high_5
Description: NF3761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3761_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 121 - 574
Target Start/End: Original strand, 39055772 - 39056229
Alignment:
| Q |
121 |
ccaactttatttcatccatgcacgttttacaaacttaggatataaaaatattagagttaattgaattggtgttcaataattttgtaggaaaacaacttgg |
220 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||| || |||||||| ||||||| ||| || |
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| T |
39055772 |
ccaactttatttcatccatgcacgttttacaaccttaggataaaaaaaa-------ttaattgaattggtgtccattaattttgcaggaaaataacaagg |
39055864 |
T |
|
| Q |
221 |
gagcatttgattttgtttttgtggatgctgataaggataattacttaaactatcatgagaggataattgatcttgttaaagttggaggattgattggata |
320 |
Q |
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| T |
39055865 |
gggcatttgattttgtttttgtggatgctgataaggataattacttaaactatcatgagaggataattgatcttgttaaagttggaggattgattggata |
39055964 |
T |
|
| Q |
321 |
tgataatactttatggtttggatcagttgctgttccagatgatgctcctatgctggatttcgttaaacgtttacgtggtcatgtgattgagcttaacaaa |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39055965 |
tgataatactttatggtttggatcagttgctgttccagatgatgctcctatgctggatttcgttaaacgtttacgtggtcatgtgattgagcttaacaaa |
39056064 |
T |
|
| Q |
421 |
tatttagctaaagattcaagggtcgagatttgtcagctccccgtcggtgatggcattaccctgtgccgccgcatcagctgatccctcc------------ |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39056065 |
tatttagctaaagattcaagggtcgagatttgtcagctccccgtcggtgatggcattaccctgtgccgccgcatcagctgatccctcctttgtgatgatt |
39056164 |
T |
|
| Q |
509 |
--tttgtgtgtatgaagaatttggtttcttgttattattgatattgatctttgcttcattcttgtcca |
574 |
Q |
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| T |
39056165 |
aatttgtgtgtatgaagaatttggtttcttg---ttattgatattgatctttgcttcattcttgtcca |
39056229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 197 - 480
Target Start/End: Original strand, 39049763 - 39050046
Alignment:
| Q |
197 |
taattttgtaggaaaacaacttgggagcatttgattttgtttttgtggatgctgataaggataattacttaaactatcatgagaggataattgatcttgt |
296 |
Q |
| |
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|||||||||||||||| ||| ||| |||||||| ||| |||||||||||||||| ||| |||| ||| ||||||||||| ||||| | |||||||||| |
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| T |
39049763 |
taattttgtaggaaaataacaagggggcatttgactttatttttgtggatgctgacaagaataactacataaactatcataagagggtgcttgatcttgt |
39049862 |
T |
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| Q |
297 |
taaagttggaggattgattggatatgataatactttatggtttggatcagttgctgttccagatgatgctcctatgctggatttcgttaaacgtttacgt |
396 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |||||||||| || | |||||||||||| ||||||| ||| ||| ||||||| |
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| T |
39049863 |
gaaagttggaggattgattggatatgataataccttatgggttggatcagtggcagctccagatgatgcacctatgcatagttttattatgaatttacgt |
39049962 |
T |
|
| Q |
397 |
ggtcatgtgattgagcttaacaaatatttagctaaagattcaagggtcgagatttgtcagctccccgtcggtgatggcattacc |
480 |
Q |
| |
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||| ||||||||||| | ||||| ||||||||| |||||| |||| | || ||||||||||| | || |||||||| |||||| |
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| T |
39049963 |
ggttatgtgattgagttcaacaagtatttagctcaagatttaaggattgaaatttgtcagctttcggtaggtgatggaattacc |
39050046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 177 - 496
Target Start/End: Original strand, 39238099 - 39238418
Alignment:
| Q |
177 |
ttaattgaattggtgttcaataattttgtaggaaaacaacttgggagcatttgattttgtttttgtggatgctgataaggataattacttaaactatcat |
276 |
Q |
| |
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|||||||||||||||| || ||||||| ||||||| ||| || | ||||| |||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
39238099 |
ttaattgaattggtgtccatcaattttgcaggaaaataacaaagggacgtttgactttgtttttgtggatgctgataagaataactacttaaactatcac |
39238198 |
T |
|
| Q |
277 |
gagaggataattgatcttgttaaagttggaggattgattggatatgataatactttatggtttggatcagttgctgttccagatgatgctcctatgctgg |
376 |
Q |
| |
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| |||||| |||||||||||||| ||||| ||||| || || || ||||| || |||||| ||||||||| || | |||| |||||| |||||| ||| |
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| T |
39238199 |
gtgaggatgattgatcttgttaaggttgggggattaatcggttacgataacaccttatggagtggatcagtggcagctccacctgatgcacctatgatgg |
39238298 |
T |
|
| Q |
377 |
atttcgttaaacgtttacgtggtcatgtgattgagcttaacaaatatttagctaaagattcaagggtcgagatttgtcagctccccgtcggtgatggcat |
476 |
Q |
| |
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||||| ||| |||||||||| ||||||||||| | || ||| || ||||| |||||||||| | |||||||||||||| | | | |||||| || |
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| T |
39238299 |
atttcattaggaatttacgtggttatgtgattgagttcaataaacatctagctcaagattcaagaattgagatttgtcagctatctatagctgatgggat |
39238398 |
T |
|
| Q |
477 |
taccctgtgccgccgcatca |
496 |
Q |
| |
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|||||| || |||||||||| |
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| T |
39238399 |
taccctatgtcgccgcatca |
39238418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 39055693 - 39055779
Alignment:
| Q |
14 |
caaaattgactttagagaaggacctgctctccctcttcttgaccaacttattcaagacgtgcgtttgcatcacttgccaccaacttt |
100 |
Q |
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| T |
39055693 |
caaaattgactttagagaaggacctgctctccctcttcttgaccaacttattcaagacgtgcgtttgcatcatttgccaccaacttt |
39055779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 224 - 496
Target Start/End: Complemental strand, 39291264 - 39290992
Alignment:
| Q |
224 |
catttgattttgtttttgtggatgctgataaggataattacttaaactatcatgagaggataattgatcttgttaaagttggaggattgattggatatga |
323 |
Q |
| |
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|||||||||| |||| ||||||||||||||||||||| ||| | |||||||| ||||| | |||| ||||||||||||||||||||| ||| |||||| |
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| T |
39291264 |
catttgatttcgtttatgtggatgctgataaggataactacattaactatcacaagagggtggttgagcttgttaaagttggaggattggttgcatatga |
39291165 |
T |
|
| Q |
324 |
taatactttatggtttggatcagttgctgttccagatgatgctcctatgctggatttcgttaaacgtttacgtggtcatgtgattgagcttaacaaatat |
423 |
Q |
| |
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|| || |||||| ||| || ||||| |||||| ||||| || ||| || ||||| ||| |||||||||||||||||| |||||||| || |
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| T |
39291164 |
caacaccttatggagtggttctgttgcggttccatcagatgcaccgatgacaagttacgttaggaattttcgtggtcatgtgattgagtttaacaaacat |
39291065 |
T |
|
| Q |
424 |
ttagctaaagattcaagggtcgagatttgtcagctccccgtcggtgatggcattaccctgtgccgccgcatca |
496 |
Q |
| |
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||||| | |||| |||| | |||| ||||| ||| | || || ||||| ||||| || ||||||||||||| |
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| T |
39291064 |
ttagcccaggatttaaggattcagatctgtcaactctcagtaggcgatggaattactctatgccgccgcatca |
39290992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 39049625 - 39049684
Alignment:
| Q |
18 |
attgactttagagaaggacctgctctccctcttcttgaccaacttattcaagacgtgcgt |
77 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||| |||||| ||||||| |||||| |
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| T |
39049625 |
attgactttagacaaggacctgctctccctcttcttgatcaacttcttcaagatgtgcgt |
39049684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 308
Target Start/End: Complemental strand, 33453517 - 33453445
Alignment:
| Q |
236 |
tttttgtggatgctgataaggataattacttaaactatcatgagaggataattgatcttgttaaagttggagg |
308 |
Q |
| |
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|||||||||||||||| || || |||||| | ||||| ||| ||||| ||||||||||||||||||| ||||| |
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| T |
33453517 |
tttttgtggatgctgacaaagacaattacctcaactaccataagaggttaattgatcttgttaaagtgggagg |
33453445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 39291415 - 39291352
Alignment:
| Q |
14 |
caaaattgactttagagaaggacctgctctccctcttcttgaccaacttattcaagacgtgcgt |
77 |
Q |
| |
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||||||||| |||||| ||||||||||||||||||| ||||| ||||| ||||||| |||||| |
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| T |
39291415 |
caaaattgattttagacaaggacctgctctccctctacttgatgaacttcttcaagatgtgcgt |
39291352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 39049715 - 39049756
Alignment:
| Q |
129 |
atttcatccatgcacgttttacaaacttaggatataaaaata |
170 |
Q |
| |
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|||| ||||||||||||||||||||||||| ||| ||||||| |
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|
| T |
39049715 |
attttatccatgcacgttttacaaacttagaataaaaaaata |
39049756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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