View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3761_high_6 (Length: 599)
Name: NF3761_high_6
Description: NF3761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3761_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 570; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 11 - 584
Target Start/End: Complemental strand, 419884 - 419311
Alignment:
| Q |
11 |
cagagagtgcactttgtgaggctgctagtatcggaggagcaattcggatactggttgagacaattgaagatggatcttcactaggaaaagagcatgcagt |
110 |
Q |
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| T |
419884 |
cagagagtgcactttgtgaggctgctagtatcggaggagcaattcggatactggttgagacaattgaagatggatcttcactaggaaaagagcatgcagt |
419785 |
T |
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| Q |
111 |
tggcatacttctgcttatatgtcaaagctgcagagaaaaatatagagtattgattttgacagatggggtgatgccaggattacttcagttaaccgtcgat |
210 |
Q |
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| T |
419784 |
tggcatacttctgcttatatgtcaaagctgcagagaaaaatatagagtattgattttgacagatggggtgatgccaggattacttcagttaaccgtcgat |
419685 |
T |
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| Q |
211 |
ggaacgtggagagccaaatcgacggctagggaattgttgttgcttctgagagactgctctagttatagctcgagaagtacacaaattaatcacaagctta |
310 |
Q |
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| T |
419684 |
ggaacgtggagagccaaatcgacggctagggaattgttgttgcttctgagagactgctctagttatagctcgagaagtacacaaattaatcacaagctta |
419585 |
T |
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| Q |
311 |
tagaacagataatggaagaaattgatacagaaggagagaaattgacagatactactttgagattggtagaggagatgattgcaaagctcaatacataatc |
410 |
Q |
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| T |
419584 |
tagaacagataatggaagaaattgatacagaaggagagaaattgacagatactactttgagattggtagaggagatgattgcaaagctcaatacataatc |
419485 |
T |
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| Q |
411 |
attcaagtaaataaggtttttaaaataggttcggatcataaagtattcttgcatctcttggttttctctacacttttctggtatcaattatgttttctag |
510 |
Q |
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| T |
419484 |
attcaagtaaataaggttttcaaaataggttcggatcataaagtattcttgcatctcttggttttctctacacttttctggtatcaattatgttttctag |
419385 |
T |
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| Q |
511 |
tttatgacttaactacaaggatggtatgtttcagtgagacaatgtagaattgtttctttgtatatatgattagt |
584 |
Q |
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| T |
419384 |
tttatgacttaactacaaggatggtatgtttcagtgagacaatgtagaattgtttctttgtatatatgattagt |
419311 |
T |
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