View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3761_high_7 (Length: 585)
Name: NF3761_high_7
Description: NF3761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3761_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 416; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 11 - 450
Target Start/End: Original strand, 37503858 - 37504297
Alignment:
| Q |
11 |
catcatcattatctactctaataataatatcaaactctcctacattatgtgaccctaatcctctcccaacagcattatcagagctttctgtatgtccttg |
110 |
Q |
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| T |
37503858 |
catcatcattatctactctaataataatatcaaactctcctacattatgtgaccctaatcctctcccaacagcattatcagagctttctgtatgtccttg |
37503957 |
T |
|
| Q |
111 |
attctgagtctcaacagaaatatttgaaattgaatcaagttgatcagtgactgtgatactcacctctgcagcatcattgatcacaggtgcacgacacagc |
210 |
Q |
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| T |
37503958 |
attctgagtgtcaccagaaatatttgaaattgaatcaagttgatcagtgactgtgatactcacctctgcagcatcattgataacaggtgcacgacacagc |
37504057 |
T |
|
| Q |
211 |
ggacaattcttgtgtgaactaagccaagtatcaatacaagggatatgaaaagcgtggctacacttaggcaaaattctgagactctcttcctcttgaaatt |
310 |
Q |
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| T |
37504058 |
ggacaattcttgtgtgaactaagccaagtatcaatacaagggatatgaaaagcgtggctacacttaggcaaaattctgagactctcttcctcttgaaatt |
37504157 |
T |
|
| Q |
311 |
cacctagacaaacagaacactctgtcccatcaacgagtccttcgtcttttccgtatttgaagactgtaatggaatctatcaccgatcgttgaagccctac |
410 |
Q |
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| T |
37504158 |
cacctagacaaacagaacactctgtcccatcaacgagtccttcgtcttttctgtatttgaagactgtaatggaatctatcaccgatcgttgaagccctac |
37504257 |
T |
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| Q |
411 |
agtacggataaaccatatgggatgatcaacaataaccctc |
450 |
Q |
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| T |
37504258 |
cgtacggatgaaccatatgggatgatcaacaataaccctc |
37504297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 482 - 567
Target Start/End: Original strand, 37504329 - 37504414
Alignment:
| Q |
482 |
ttgaaattgtagaatctctataaccatggacatcaaacaataccggcgtgtttcttctatcgcgagtatggttatgtcttcttgat |
567 |
Q |
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| T |
37504329 |
ttgaaattgtagaatctctataaccatggacatcaaacaataccggcgtgtttcttctatcgcgagtatggttatgtcttcttgat |
37504414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 335
Target Start/End: Original strand, 27771620 - 27771725
Alignment:
| Q |
230 |
taagccaagtatcaatacaagggatatgaaaagcgtggctacacttaggcaaaattctgagactctcttcctcttgaaattcacctagacaaacagaaca |
329 |
Q |
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| T |
27771620 |
taagccatgtatcaatacaaggaagatgaaaaacatggttacacattggtaaaagtctaacactttcatcatcttgaaactcacttagacaaactgaaca |
27771719 |
T |
|
| Q |
330 |
ctctgt |
335 |
Q |
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||||| |
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| T |
27771720 |
atctgt |
27771725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 221 - 343
Target Start/End: Original strand, 37227852 - 37227974
Alignment:
| Q |
221 |
tgtgtgaactaagccaagtatcaatacaagggatatgaaaagcgtggctacacttaggcaaaattctgagactctcttcctcttgaaattcacctagaca |
320 |
Q |
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||||||| ||||||||||||||||||||||| | ||||||||| ||| ||||||| ||||||| ||| ||| |||| || |||| ||| |||| | ||| |
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| T |
37227852 |
tgtgtgatctaagccaagtatcaatacaaggtaaatgaaaagcatggttacactttggcaaaagtctaagattctcatcttcttcaaactcactcaaaca |
37227951 |
T |
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| Q |
321 |
aacagaacactctgtcccatcaa |
343 |
Q |
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||||||||| |||| ||||||| |
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| T |
37227952 |
aacagaacaatctgatccatcaa |
37227974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 232 - 344
Target Start/End: Original strand, 12617819 - 12617931
Alignment:
| Q |
232 |
agccaagtatcaatacaagggatatgaaaagcgtggctacacttaggcaaaattctgagactctcttcctcttgaaattcacctagacaaacagaacact |
331 |
Q |
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||||| |||||||||||||| | ||||||||| |||||||| ||||| |||| ||| | |||||| || |||||||| || ||||||||||||||| | |
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| T |
12617819 |
agccatgtatcaatacaaggaagatgaaaagcatggctacatttaggtaaaagtctaatactctcatcgtcttgaaactcgtttagacaaacagaacaat |
12617918 |
T |
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| Q |
332 |
ctgtcccatcaac |
344 |
Q |
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|||| ||||||| |
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| T |
12617919 |
ctgttacatcaac |
12617931 |
T |
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