View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3761_low_10 (Length: 583)
Name: NF3761_low_10
Description: NF3761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3761_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 557
Target Start/End: Complemental strand, 38108645 - 38108086
Alignment:
| Q |
1 |
tttatgtagtttaatataatatcaatcaatacaaactcaacacccacatgctgcttacgtttttgtttatatattattcagagttttttatgcagggtat |
100 |
Q |
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| T |
38108645 |
tttatgtagtctaatataatgtcaatcaatacaatctcaacacccacatgctgctttcgtttttgtttatatattattcagatttttttttgcagggtat |
38108546 |
T |
|
| Q |
101 |
acattctattttcagcaatgtgatgattgttgttttgacctaaggtaagatgaatcctctgttttaccataagataatttctacatttatttgaaatttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38108545 |
acattctattttcagcaatgtgatgattgttgttttgatctaaggtaagatgagtcctctgttttaccataagataatttctacatttatttgaaatttt |
38108446 |
T |
|
| Q |
201 |
cttcttcgtatttataaagtgttgtggatcaagttttcaattgttataatatggtaggagctgctcggtattannnnnnnnnnnnnngataagctgcaat |
300 |
Q |
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| T |
38108445 |
ctttttcgtatttataaagtgttgtggatcaagttttcaattgttatattatggtaggagctgatcggtattatttttttcttttttgataagctgcaat |
38108346 |
T |
|
| Q |
301 |
tgtgtaatttcaactccttaatttaattagtttaatatcctgtgaa------------------acagctgagaagagtaatcctttctctctgttcatt |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
38108345 |
tgtgtaatttcaactccttaatttaattagtttaatatcctgtgaaatttaaattttaggtgccacagctgagaagagtaatcctttgtctctgttcatt |
38108246 |
T |
|
| Q |
383 |
ttgattggattcatgaaagnnnnnnnnnnnggaaagaagttgaaatatatggagcattgagagaagaaaccataaaccaagactattcaaaattattagt |
482 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
38108245 |
ttgattggattcatgaaagaaaaaaaaaaaggaaagaagttgaaatatatggagcattgagagaagaaaccataaaccaagactattcaaaattat---t |
38108149 |
T |
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| Q |
483 |
ataatttggagtttagaatggctgccagacggttgcttcgttgcgtaggtttccgtttctaatcaaacaaatgat |
557 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
38108148 |
ataatt------------tggctgccagacggttgcttcgttgcgtaggtttccatttctaatcaaacaaatgat |
38108086 |
T |
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