View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3761_low_11 (Length: 563)
Name: NF3761_low_11
Description: NF3761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3761_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 1 - 547
Target Start/End: Original strand, 33153531 - 33154076
Alignment:
| Q |
1 |
catagttctaatcgctattcgaactcgaaatcttgtcaatgacgattcgcctttagccttaaacttagatagtggcataaaaagaagatggaccccctca |
100 |
Q |
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| T |
33153531 |
catagttttaatcgctattcgaactcgaaatcttgtcaatga---ttcgcctttagccttaaacttagatagtggcataaaaagaagatggaccccctca |
33153627 |
T |
|
| Q |
101 |
accttcaccaagctaaacaccccaccttcttgttggttcagctttatatgatgatgaccacatagtacatggttttgctaagtctttctgaagactgatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33153628 |
accttcaccaagctaaacaccccaccttcttgttggttcagctttatatgatgatgaccacatagtacatggttttgctaagtctttctgaagactgatt |
33153727 |
T |
|
| Q |
201 |
tccagtacaatgtgtcagtgt-ccccctcaaagcttccttatttttctcaaaagaaactctattttcttctctttgccttctttggattttgttaatctc |
299 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33153728 |
tccagtacaatgtgtcagtgtcccccctcaaagcttccttatttttctcaaaaaaaaatctcttttcttctctttgccttctttggattttgttaatctc |
33153827 |
T |
|
| Q |
300 |
tcaacacaacttcacatgtgatgaggttggtgtgaaacatgaatcacacacacac-nnnnnnnnnnnctttgaagaaccttattgattaaattcatcata |
398 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
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| T |
33153828 |
tcaacacaacttcacatgtgatgtggttggtgtgaaacatgaatcacacacacacacacaaaaaaaactttgaagaaccttattgattaaattcatcgta |
33153927 |
T |
|
| Q |
399 |
taatgaataaattaaaaagacatctcatcttataattattcctaagatgtgattttataacaaaaataataattgaagaagtaaagtaactattcatgaa |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33153928 |
taatgaataaattaaaaagacatctcatcttataattattcctaagatgtgattttataacaaaaataataattgaagaagtaaagtaactattcatgaa |
33154027 |
T |
|
| Q |
499 |
atatgaataaggaaaataaaacaaaattcattagacaaagtgacttttt |
547 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33154028 |
atatgaataaggaaaataaaacaaaattcattagacaaagtgacttttt |
33154076 |
T |
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