View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3761_low_12 (Length: 546)
Name: NF3761_low_12
Description: NF3761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3761_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 18 - 529
Target Start/End: Original strand, 26454241 - 26454753
Alignment:
| Q |
18 |
tcaaccgtgttccatgtttcgtgatacacacaactcattgcacacatcgcatattgccacttaattgtacactttatctttctttatggttgcgcgatgc |
117 |
Q |
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|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26454241 |
tcaaccttgttccatgtttcgtgatacac--aactcattgcacacatcgcatattgccacttaattgtacactttatctttctttatggttgcgcgatgc |
26454338 |
T |
|
| Q |
118 |
gtggctactagcacccgttcaacataaggcagtagctcgtattttctcaattcttcatctcttgttctatttctcatcaacaaaaggtatgtgctaacta |
217 |
Q |
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|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26454339 |
gtggctcctagcacccgttcgacataaggcagtagctcgtattttctcaattcttcatctcttgttctatttctcatcaacaaaaggtatgtgctaacta |
26454438 |
T |
|
| Q |
218 |
tacatcaagaaatcacttgattgatcttataaaaagtgtagcatgaccacatagttgtttgttttaggtgatttgttgtggttcaaggccttgtgcttta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26454439 |
tacatcaagaaatcacttgattgatcttataaaaagtgtagcatgaccccatagttgtttgttttaggtgatttgttgtggttcaaggccttgtgcttta |
26454538 |
T |
|
| Q |
318 |
aattactatcacaagcccaaccattggattatttacataaatttgactaaaatgaattataacttgctagaaacactctaaaatgtctcctaaattatgc |
417 |
Q |
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| T |
26454539 |
aattactatcacaagcccaaccattggattatttacataaatttgactaaaatgaattataacttgctagaaacactctaaaatgtctcctaaattatgc |
26454638 |
T |
|
| Q |
418 |
taaaaaatactatgattgattatcatcacgaccacatctcttgtcttcatatgttttcatcattttggattat---ttcttcttcaccatcaattatcat |
514 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
26454639 |
taaaaaatactatgattgattatcatcacgaccacatctcttgtcttcatatgttgtcatcattttggattatttcttcttcttcaccatcaattatcat |
26454738 |
T |
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| Q |
515 |
tatgtcaatactttc |
529 |
Q |
| |
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||||||||||||||| |
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| T |
26454739 |
tatgtcaatactttc |
26454753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 401
Target Start/End: Original strand, 24455280 - 24455396
Alignment:
| Q |
285 |
gtgatttgttgtggttcaaggccttgtgctttaaattactatcacaagcccaaccattggattatttacataaatttgactaaaatgaattataacttgc |
384 |
Q |
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|||||||| ||||||||||||||||||||| |||||||| || || | ||| |||||| |||| ||||||||| | || ||||| | | ||||| ||| |
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| T |
24455280 |
gtgatttgacgtggttcaaggccttgtgcttcaaattactttcccatgaccatccattgaattagttacataaactcgattaaaaaaattgataacctgc |
24455379 |
T |
|
| Q |
385 |
tagaaacactctaaaat |
401 |
Q |
| |
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|| ||| |||||||||| |
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| T |
24455380 |
taaaaaaactctaaaat |
24455396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 295 - 423
Target Start/End: Complemental strand, 13962373 - 13962245
Alignment:
| Q |
295 |
gtggttcaaggccttgtgctttaaattactatcacaagcccaaccattggattatttacataaatttgactaaaatgaattataacttgctagaaacact |
394 |
Q |
| |
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||||||||||||||||||||| ||| | | || || || || |||||| ||||||| |||||| | |||||||| | | | ||||||||| ||| ||| |
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| T |
13962373 |
gtggttcaaggccttgtgcttcgaatcattctctcatgctcatccattgaattatttgcataaactcgactaaaacaattgagaacttgctaaaaagact |
13962274 |
T |
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| Q |
395 |
ctaaaatgtctcctaaattatgctaaaaa |
423 |
Q |
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||||||| | | ||||| |||||||||| |
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| T |
13962273 |
ctaaaataacacataaatgatgctaaaaa |
13962245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 249 - 293
Target Start/End: Complemental strand, 43716728 - 43716684
Alignment:
| Q |
249 |
aaaagtgtagcatgaccacatagttgtttgttttaggtgatttgt |
293 |
Q |
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| T |
43716728 |
aaaagtatagcatgaccacatagttgtctcttttgggtgatttgt |
43716684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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