View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3761_low_17 (Length: 475)
Name: NF3761_low_17
Description: NF3761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3761_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 361
Target Start/End: Complemental strand, 13853656 - 13853311
Alignment:
| Q |
17 |
acttggaggatgagatttcaaagtttcatttatacttcaatgacccttcaccgtttgagtgtactgttaagaatggggagattctttacttgtatgattc |
116 |
Q |
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| T |
13853656 |
acttggaggatgagatttcaaagtttcctttatacttcaatgacccttcaccgtttgaatgtactgttaagaatggggagattctttacttgtatgattc |
13853557 |
T |
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| Q |
117 |
ccttct-------------gcatcatgtatctgtttttcttaatctttcttctgttgaatgatattctcaacatatttaatttacctgatttcatattgt |
203 |
Q |
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| T |
13853556 |
ccttcttttccttggcattgcatcatgtatctgtttttcttaatctttcttctgttgaatgatattctcaacatatttaatttacctgatttcatattgt |
13853457 |
T |
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| Q |
204 |
accatttatattttatttacaagtaagtagaaaatgttgcagcattgctcggcacattcccccagtttttatgctattgcaaattcataacatagtgtga |
303 |
Q |
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| T |
13853456 |
accatttatatttaatttacaagtaagaagaaaatgttgcagcattgcttggcacattcccccagtttttatgctattgcaaattcata----------- |
13853368 |
T |
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| Q |
304 |
taccataatattcatgatgaagcaacttggctttccaatatgtcatgtcatgcttatg |
361 |
Q |
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| T |
13853367 |
-cccataatattcatgattaagcaacttggttttccaatatgtcatgtcatgcttatg |
13853311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 17 - 356
Target Start/End: Original strand, 10220316 - 10220663
Alignment:
| Q |
17 |
acttggaggatgagatttcaaagtttcatttatacttcaatgacccttcaccgtttgagtgtactgttaagaatggggagattctttacttgtatgattc |
116 |
Q |
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| T |
10220316 |
acttggaggacgagatttcaaagtttcctttatacttcaatggccctccaccgtttgagtgtactgtcaaggctggggagattctttacttgtatgattc |
10220415 |
T |
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| Q |
117 |
ccttct--------gcatcatgtatctgtttttcttaatctttcttctgttgaatgatattctcaacatatttaatttacctgatttcatattgtaccat |
208 |
Q |
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| T |
10220416 |
tcttcttttgcattgcatcatgtatctgtttttcttcatctttcttctgttgaatgatattcgcaatatatttaatttagctgatttcatagcgtaccat |
10220515 |
T |
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| Q |
209 |
ttatattttatttacaagtaagtagaaaatgttgcagcattgctcggcacattcccccagtttttatgctattgcaaattcataacatagtgtgatacca |
308 |
Q |
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| T |
10220516 |
ttatattttatttacatgtaagaagaaaatgctgcagcattgcatggcgcattcccccagtttttatgctattgcaaattcataccatagtgtgatacca |
10220615 |
T |
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| Q |
309 |
taatattcatgatgaagcaacttggctttccaatatgtcatgtcatgc |
356 |
Q |
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| T |
10220616 |
taatattcatgattaagaaacttggctttccaatatgtcatatcatgc |
10220663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 344 - 410
Target Start/End: Complemental strand, 13853294 - 13853227
Alignment:
| Q |
344 |
tgtcatgtcatgcttatgtaaggatcaatcctcct-ttttctggtccatatccaatgttaataagaaa |
410 |
Q |
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| T |
13853294 |
tgtcatgtcatgcttatgtaaggatcaatcctcctcttttcttgtccatatccaatgttaataagaaa |
13853227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 412 - 470
Target Start/End: Complemental strand, 13853198 - 13853140
Alignment:
| Q |
412 |
ttaacattaagtatacttatttcaactttttacaacctattgattaccgatctcctatg |
470 |
Q |
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| T |
13853198 |
ttaacattaagtatgcttatttcaactttttacaacctattgattacggatctcctatg |
13853140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 415 - 468
Target Start/End: Original strand, 10221940 - 10221993
Alignment:
| Q |
415 |
acattaagtatacttatttcaactttttacaacctattgattaccgatctccta |
468 |
Q |
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| T |
10221940 |
acattaagtatgcttatttcaactttttacaatctattgattaccgatctccta |
10221993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 360 - 413
Target Start/End: Original strand, 10221843 - 10221897
Alignment:
| Q |
360 |
tgtaaggatcaatcctcct-ttttctggtccatatccaatgttaataagaaaatt |
413 |
Q |
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| T |
10221843 |
tgtaaggatcaatcctcctcttttctggtcaatatccaatgttaataagaaaatt |
10221897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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