View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3761_low_18 (Length: 467)
Name: NF3761_low_18
Description: NF3761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3761_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 14 - 411
Target Start/End: Original strand, 23080198 - 23080614
Alignment:
| Q |
14 |
agatcaaagatggtcactccaaggaatgacagctctagtgactggtggaacacgaggcatagggtcagttctctaatgcaaatatattatctctaatgag |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23080198 |
agatcaaagatggtcactccaaggaatgacagctctagtgactggtggaacacgaggcatagggtcagttctctaatgcaaatatattatctctaatgag |
23080297 |
T |
|
| Q |
114 |
aacatgtaatgtaatttatcatgttaatttt-------------------gtgattaatcaatcaggtatgcaattgtggaagagttagcagaatttggt |
194 |
Q |
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|||||||||||||||||||||| ||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
23080298 |
aacatgtaatgtaatttatcatcataattttattttgttttgtttcttttgtgaataatcaattaggtatgcaattgtggaagagttagcagaatttggt |
23080397 |
T |
|
| Q |
195 |
gcaagtgtgcatatatgtgcacgtaatcaagatgatattaacaaatgtttggaagagtggaaaggcaaaggattttgtgtgacaggttcaacttgtgatt |
294 |
Q |
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||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23080398 |
gcaagtgtgcatatatgtgcacgcaatcaagaagatattaacaaatgtttggaagagtggaaaggcaaaggattttgtgtgacaggttcaacttgtgatt |
23080497 |
T |
|
| Q |
295 |
tattatttcatgaccaacgtcaaaagttgatggaaactgttgcatctgtcttcgatggaaaactcaatattctagtaagattctcatccgtctctaacta |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
23080498 |
tattatttcatgaccaacgtcaaaagttgatggaaactgttgctttggtctttgatggaaaactcaatattcttgtaagattctcatccgtctctaacta |
23080597 |
T |
|
| Q |
395 |
ttatgtccttttgggaa |
411 |
Q |
| |
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||||||||||||||||| |
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| T |
23080598 |
ttatgtccttttgggaa |
23080614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 377
Target Start/End: Original strand, 23063559 - 23063918
Alignment:
| Q |
18 |
caaagatggtcactccaaggaatgacagctctagtgactggtggaacacgaggcatagggtcagttctctaatgcaaatatattatctctaatgagaaca |
117 |
Q |
| |
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|||| ||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
23063559 |
caaaaatggtcacttcatggaatgacagctctagtaactggtggaacacgaggcatagggtcagttctctaatgcaaatatcttatcactaatgagaaca |
23063658 |
T |
|
| Q |
118 |
tgtaatgtaatttatcatgttaattttgtgattaatcaatcaggtatgcaattgtggaagagttagcagaatttggtgcaagtgtgcatatatgtgcacg |
217 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
23063659 |
tgtaatgtaatgaatcatgttaattttgtgattaatcaatcaggtatgcaattgtggaagagttagcagaatttggggcaagtgtgcatatatgtgcacg |
23063758 |
T |
|
| Q |
218 |
taatcaagatgatattaacaaatgtttggaagagtggaaaggcaaaggattttgtgtgacaggttcaacttgtgatttattatttcatgaccaacgtcaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23063759 |
taatcaagatgatattaacaaatgtttggaagagtggaaaggcaaaggattttgtgtgacaggttcaacttgtgatttattatttcatgaccaacgtcaa |
23063858 |
T |
|
| Q |
318 |
aagttgatggaaactgttgcatctgtcttcgatggaaaactcaatattctagtaagattc |
377 |
Q |
| |
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|||||||||||||| ||||| || |||| |||||||||||||||||||||||||||||| |
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| T |
23063859 |
aagttgatggaaaccgttgcttcgatctttgatggaaaactcaatattctagtaagattc |
23063918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 14 - 376
Target Start/End: Original strand, 23091105 - 23091467
Alignment:
| Q |
14 |
agatcaaagatggtcactccaaggaatgacagctctagtgactggtggaacacgaggcatagggtcagttctctaatgcaaatatattatctctaatgag |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||| |||||| |
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| T |
23091105 |
agatcaaagatggtcactccaaggaatgacagctctagtgactggtggaacacgaggcttagggttagttctctaatgcaaatatcttatctcaaatgag |
23091204 |
T |
|
| Q |
114 |
aacatgtaatgtaatttatcatgttaattttgtgattaatcaatcaggtatgcaattgtggaagagttagcagaatttggtgcaagtgtgcatatatgtg |
213 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
23091205 |
aacatgtaatataatttatcatgttaattttgtgattaatcaatcaggtatgcaattgtggaagagttagcagaatttggggcaagtgtgcatatatgtg |
23091304 |
T |
|
| Q |
214 |
cacgtaatcaagatgatattaacaaatgtttggaagagtggaaaggcaaaggattttgtgtgacaggttcaacttgtgatttattatttcatgaccaacg |
313 |
Q |
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|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
23091305 |
caagaaatcaagatgatattaacaaatgtttggaagagtggaaaggcaaaggattttgtgtgacaggttcaacttgtgatttattatttcgtgaacaacg |
23091404 |
T |
|
| Q |
314 |
tcaaaagttgatggaaactgttgcatctgtcttcgatggaaaactcaatattctagtaagatt |
376 |
Q |
| |
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| |||| ||||||||||||||||| || ||| | |||||||||||||||||||||||||| |
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| T |
23091405 |
tgaaaaattgatggaaactgttgcttcaacctttcaaggaaaactcaatattctagtaagatt |
23091467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 163 - 375
Target Start/End: Original strand, 23056497 - 23056709
Alignment:
| Q |
163 |
atgcaattgtggaagagttagcagaatttggtgcaagtgtgcatatatgtgcacgtaatcaagatgatattaacaaatgtttggaagagtggaaaggcaa |
262 |
Q |
| |
|
|||||||||||||||| |||| ||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23056497 |
atgcaattgtggaagaattagtagaatttggggcaagggtgcatatatgtgcacgaaatcaagatgatattaacaaatgtttggaagagtggaaaggcaa |
23056596 |
T |
|
| Q |
263 |
aggattttgtgtgacaggttcaacttgtgatttattatttcatgaccaacgtcaaaagttgatggaaactgttgcatctgtcttcgatggaaaactcaat |
362 |
Q |
| |
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|||||||||||| ||||| ||| ||||||||||||||| ||||||||||||||| | ||||||| |||||| || |||| | |||||||||||| |
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| T |
23056597 |
aggattttgtgtaacagggtcagcttgtgatttattatcctgtgaccaacgtcaaaatctaatggaaaatgttgcttcaatctttcaaggaaaactcaat |
23056696 |
T |
|
| Q |
363 |
attctagtaagat |
375 |
Q |
| |
|
||||||||||||| |
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| T |
23056697 |
attctagtaagat |
23056709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 159 - 371
Target Start/End: Original strand, 23034896 - 23035108
Alignment:
| Q |
159 |
aggtatgcaattgtggaagagttagcagaatttggtgcaagtgtgcatatatgtgcacgtaatcaagatgatattaacaaatgtttggaagagtggaaag |
258 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||| |||| |||||||| ||||||||||||||||||||| |
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| T |
23034896 |
aggtacgcaattgtggaagagttagcagaatttggagcagctgtgcatgtatgtgcacgtaatgaagaagatattaataaatgtttggaagagtggaaaa |
23034995 |
T |
|
| Q |
259 |
gcaaaggattttgtgtgacaggttcaacttgtgatttattatttcatgaccaacgtcaaaag-ttgatggaaactgttgcatctgtcttcgatggaaaac |
357 |
Q |
| |
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|||||| ||| ||| ||||| ||| |||||| ||||||||||||| ||||| |||||| || |||||||||||| | ||| |||| ||||||| | |
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| T |
23034996 |
acaaagggtttaatgtaacaggatcagtatgtgatatattatttcatgaacaacg-caaaagattaatggaaactgtttcttctatctttcatggaaagc |
23035094 |
T |
|
| Q |
358 |
tcaatattctagta |
371 |
Q |
| |
|
|||||||||||||| |
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|
| T |
23035095 |
tcaatattctagta |
23035108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 159 - 371
Target Start/End: Original strand, 23026088 - 23026300
Alignment:
| Q |
159 |
aggtatgcaattgtggaagagttagcagaatttggtgcaagtgtgcatatatgtgcacgtaatcaagatgatattaacaaatgtttggaagagtggaaag |
258 |
Q |
| |
|
||||| |||||||| ||||||||||| |||||||| ||| |||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||| |
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|
| T |
23026088 |
aggtacgcaattgttgaagagttagctgaatttggagcatctgtgcatatatgtgcacgtaatgaagaagatattaataaatgtttggaagagtggaaaa |
23026187 |
T |
|
| Q |
259 |
gcaaaggattttgtgtgacaggttcaacttgtgatttattatttcatgaccaacgtcaaaagttgatggaaactgttgcatctgtcttcgatggaaaact |
358 |
Q |
| |
|
|||||| ||| ||| ||||| ||| |||||| || |||||||||| ||||| | || | |||||||||||| | ||| |||| | ||||| || |
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|
| T |
23026188 |
acaaagggtttaatgtaacaggatcagtatgtgatatactatttcatgaacaacgcaagaaactaatggaaactgtttcttctatctttcaaggaaagct |
23026287 |
T |
|
| Q |
359 |
caatattctagta |
371 |
Q |
| |
|
||||||||||||| |
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|
| T |
23026288 |
caatattctagta |
23026300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 23056319 - 23056388
Alignment:
| Q |
14 |
agatcaaagatggtcactccaaggaatgacagctctagtgactggtggaacacgaggcatagggtcagtt |
83 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||| |||||||| ||||| |||||||||||||||||| |
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|
| T |
23056319 |
agatcaaagatggtcactccaagggaagacagctcttgtgactgggggaacccgaggcatagggtcagtt |
23056388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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