View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3761_low_22 (Length: 409)
Name: NF3761_low_22
Description: NF3761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3761_low_22 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 22709814 - 22709446
Alignment:
| Q |
1 |
aagaattgcattcattcccannnnnnncgatgacaaaatgtattataagcatatctcacccttttttgagttaggtagaagcgtttggatgtaattgtgt |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22709814 |
aagaattgcattcattcccatttttttcgatgacaaaatgtattataagcatatctcacccttttttgagttaggtagaagcgtttggatgtaattgtgt |
22709715 |
T |
|
| Q |
101 |
tccaatttttagttttgaagaatccttgtttgacaacgaaaactgatgttggatgaaaatgcgtttggaatcaatttttaagaatcatgtttgcagagtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22709714 |
tccaatttttagttttgaagaatccttgtttgacaacgaaaactgatgttggatgaaagtgcgtttggaatcaatttttaagaatcatgtttgcagagtc |
22709615 |
T |
|
| Q |
201 |
actttttcaaaatcatgtttgaagaaagctattttggttgaaatcttttaggattagcgtttcaaaagttgtcaacgtgaaactacgaagtagaagatga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
22709614 |
actttttcaaaatcatgtttgaagaaagctattttggttgaaatcttttaggattagcgtttcaaaagtagtcaacgtgaaactacgaagtagaagatga |
22709515 |
T |
|
| Q |
301 |
aggtgtgttgtgttgttggacaattttcatctcactttctcacaacagagggtctttagtcaatgccta |
369 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22709514 |
aggtgtattgtgttgttgggcaattttcatctcactttctcacaacagagggtctttagtcaatgccta |
22709446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 22719464 - 22719430
Alignment:
| Q |
28 |
cgatgacaaaatgtattataagcatatctcaccct |
62 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
|
|
| T |
22719464 |
cgatgacaaattgtattataagcatatctcaccct |
22719430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 62
Target Start/End: Original strand, 23869459 - 23869493
Alignment:
| Q |
28 |
cgatgacaaaatgtattataagcatatctcaccct |
62 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
|
|
| T |
23869459 |
cgatgacaaactgtattataagcatatctcaccct |
23869493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University