View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3761_low_23 (Length: 404)
Name: NF3761_low_23
Description: NF3761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3761_low_23 |
 | |
|
| [»] scaffold0009 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 20 - 391
Target Start/End: Original strand, 31295074 - 31295448
Alignment:
| Q |
20 |
aactgaaactatttatcgatttttattttctttcctccttattggtggtagatttcaatgttatggacttttgtgtagatgatattgtgacgcaacttaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||| |
|
|
| T |
31295074 |
aactgaaactatttatcgatttttattttctttcctccttgttggtggtagatttcaatgttatggatttttgtgtagataatattgtgatgcaacttaa |
31295173 |
T |
|
| Q |
120 |
aatgattatacgatgcgatatcataacttattccatctcaatgtttgttttgctttgataagtaacttcatattttgtgtttgcaggaagagcaaaccaa |
219 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31295174 |
aatgattatacgatgcgatatcatatcttattccacctcaatgtttgttttgctttgataagtaacttcatattttgtgtttgcaggaagagcaaaccaa |
31295273 |
T |
|
| Q |
220 |
tg---aggtgatgatggaaagggaaatagcacaaaagaagaactttctaagggtttgacttgagagtgtataatactgtgatttttgtgtatatctgaag |
316 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31295274 |
tgagcaggtgatgatggaaagggaaatagcacaaaagaagaactttctaagggtttgacttgagagtgtataatactgtgatttttgtgtatatctgaag |
31295373 |
T |
|
| Q |
317 |
gttattctttctgatgcaaatgttcccggtgaagaggattatgaactttttaattttgtttaacgttttctacct |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
31295374 |
gttattctttctgatgcaaatgttcccggtgaagaggattatgaactttttaattttgtttaatgttttctacct |
31295448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 23 - 254
Target Start/End: Complemental strand, 42301858 - 42301624
Alignment:
| Q |
23 |
tgaaactatttatcgatttttattttctttcctccttattggtggtagatttcaatgttatggacttttgtgtagatgatattgtgacgcaacttaaaat |
122 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| || |||||||||| |
|
|
| T |
42301858 |
tgaaactatttatcgatttttatttcctttcctccttattggtggtagatttcaatgttatggatttttgtgtagataatattgtaacataacttaaaat |
42301759 |
T |
|
| Q |
123 |
gattatacgatgcgatatcataacttattccatctcaatgtttgttttgctttgataagtaacttcatattttgtgtttgcaggaagagcaaaccaatg- |
221 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42301758 |
gattatacgatgtgatatcataacttattccacctcaaagtttgttttgctttgataagtaatttcatattttgtgtttgcaggaagagcaaacaaatga |
42301659 |
T |
|
| Q |
222 |
--aggtgatgatggaaagggaaatagcacaaaaga |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
42301658 |
gcaggtgatgatggaaagggaaatagcacaaaaga |
42301624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 287 - 350
Target Start/End: Complemental strand, 23894943 - 23894880
Alignment:
| Q |
287 |
taatactgtgatttttgtgtatatctgaaggttattctttctgatgcaaatgttcccggtgaag |
350 |
Q |
| |
|
|||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
23894943 |
taatactgtgatttatgtatatttctgaaggttattctttctgatgcaaatgttcccggcgaag |
23894880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 161; Significance: 9e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 23 - 254
Target Start/End: Complemental strand, 2368079 - 2367845
Alignment:
| Q |
23 |
tgaaactatttatcgatttttattttctttcctccttattggtggtagatttcaatgttatggacttttgtgtagatgatattgtgacgcaacttaaaat |
122 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||| | | |||||| |
|
|
| T |
2368079 |
tgaaactatttatcgttttttattttctttcccccttattggtggtagatttcaatgttatggatttttgtgtagataatattgtaacgtagcataaaat |
2367980 |
T |
|
| Q |
123 |
gattatacgatgcgatatcataacttattccatctcaatgtttgttttgctttgataagtaacttcatattttgtgtttgcaggaagagcaaaccaatg- |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||| |||| |
|
|
| T |
2367979 |
tattatacgatgcgatatcataacttattccacctcaatgtttgttttgctttgataagtaatttcatattttatgtttgcatgaagagcaaacaaatga |
2367880 |
T |
|
| Q |
222 |
--aggtgatgatggaaagggaaatagcacaaaaga |
254 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |
|
|
| T |
2367879 |
gcaggcgatgatggaaagggaaatagcacaaaaga |
2367845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 113 - 254
Target Start/End: Complemental strand, 93723 - 93579
Alignment:
| Q |
113 |
aacttaaaatgattatacgatgcgatatcataacttattccatctcaatgtttgttttgctttgataagtaacttcatattttgtgtttgcaggaagagc |
212 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
93723 |
aacttaaaatgattatacaatgcgatatcataacttattccacctcaatgtttgttttgctttgataagtaacttgatattttgtgtttgcaggaagagc |
93624 |
T |
|
| Q |
213 |
aaaccaatg---aggtgatgatggaaagggaaatagcacaaaaga |
254 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
93623 |
aaacaaatgagcaggtgatgatggaaagggaaatagcacaaaaga |
93579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 121 - 254
Target Start/End: Complemental strand, 22761898 - 22761762
Alignment:
| Q |
121 |
atgattatacgatgcgatatcataacttattccatctcaatgtttgttttgctttgataagtaacttcatattttgtgtttgcaggaagagcaaaccaat |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
22761898 |
atgattatacgatgcgatatcataacttattccacctcaatgtttgttttgctttgataagtaatttcatattttgtgtttgcaggaagagcaaacaaat |
22761799 |
T |
|
| Q |
221 |
gag---gtgatgatggaaagggaaatagcacaaaaga |
254 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| |
|
|
| T |
22761798 |
gagcaagtgatgatggaaagggaaatagcacaaaaga |
22761762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 121 - 254
Target Start/End: Original strand, 18314373 - 18314509
Alignment:
| Q |
121 |
atgattatacgatgcgatatcataacttattccatctcaatgtttgttttgctttgataagtaacttcatattttgtgtttgcaggaagagcaaaccaat |
220 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
18314373 |
atgattatacgatgcaatatcataacttattccacctcaatgtttgttttgctttgataagtaatttcatattttgtgtttgcaggaagagcaaacaaat |
18314472 |
T |
|
| Q |
221 |
g---aggtgatgatggaaagggaaatagcacaaaaga |
254 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |
|
|
| T |
18314473 |
gagcaggtgatgatggaaagggaaatagcacaaaaga |
18314509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 280 - 350
Target Start/End: Original strand, 7863362 - 7863432
Alignment:
| Q |
280 |
gagtgtataatactgtgatttttgtgtatatctgaaggttattctttctgatgcaaatgttcccggtgaag |
350 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7863362 |
gagtttataatactgtgatttttgtgtatatctgaaggttattctttctgatgcaaatgttcccggtgaag |
7863432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 287 - 342
Target Start/End: Complemental strand, 23182850 - 23182795
Alignment:
| Q |
287 |
taatactgtgatttttgtgtatatctgaaggttattctttctgatgcaaatgttcc |
342 |
Q |
| |
|
|||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
23182850 |
taatactgtgatttatgtatatttctgaaggttattctttctgatgcaaatgttcc |
23182795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University