View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3761_low_24 (Length: 395)
Name: NF3761_low_24
Description: NF3761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3761_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 6e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 33405111 - 33404917
Alignment:
| Q |
1 |
tagcgccgtgaattcatgataaagtttaaatgagtttcatgatgtgccataaaaaacgcatactagttttaccgataagaatgttcaatgcaaaactcac |
100 |
Q |
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| T |
33405111 |
tagcgtcgtgaattcatgataaagtttaaatgagtttcatgatgtg--------aacgcatactagttttaccaataagaatgttcaatgcaaaactcac |
33405020 |
T |
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| Q |
101 |
ctaa-caaataaagtgattgcagatctatgtattagtaattttcatcaataaacattaagtctaaaataatggatacaaattaatcaaaattaccttgga |
199 |
Q |
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| T |
33405019 |
ctaaacaaataaagtgattgcagatctatgtattagtaattttcatcaataaacattaagtctaaaataatggatacaaattaatcaaaattaccttgga |
33404920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 269 - 379
Target Start/End: Complemental strand, 33404848 - 33404738
Alignment:
| Q |
269 |
cctgatttataaaacgtgagtgtggcgagaaaaacgaggtagaagcaatgcaaaaatgagagaagagaagacggagtaacagaagaagaaaaaggtattg |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33404848 |
cctgatttataaaacgtgagtgtggcgagaaaaacgaggtagaagcaatgcaaaaatgagagaagagaagacggagtaacagaagaagaaaaaggtattg |
33404749 |
T |
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| Q |
369 |
attctaaaaag |
379 |
Q |
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| T |
33404748 |
attctaaaaag |
33404738 |
T |
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