View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3761_low_27 (Length: 371)
Name: NF3761_low_27
Description: NF3761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3761_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 187 - 353
Target Start/End: Original strand, 38108740 - 38108906
Alignment:
| Q |
187 |
gggatccaaagaactccaccattttaaagaagaagagaagcaactcaagctcaaaagcaacttaagctcatcgtagaaggaaactccaaatgaaggaaaa |
286 |
Q |
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| T |
38108740 |
gggatccaaagaactccacctttttaaagaagaagagaagcaactgaagctcaaaagcaacttaagctcatcgtagaaagaaactccaaatgaaggaaaa |
38108839 |
T |
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| Q |
287 |
gcgtgtagccggagttcgttttgcttgacgacgtcgcatcaacttcaactctatcacatgagtcaca |
353 |
Q |
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| T |
38108840 |
gcgtgtagccggagttcgttttgcttgacgacgtcgcatcaacttcaactctatcacatgagtcaca |
38108906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 10 - 161
Target Start/End: Original strand, 38108571 - 38108722
Alignment:
| Q |
10 |
aatatataaacaaaaacgaaagcagcatgtgggtgttgagattgtattgattgacattatattagactacataaaggttggaaccctcttaaaattaaat |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38108571 |
aatatataaacaaaaacgaaagcagcatgtgggtgttgagattgtattgattgacattatattagactacataaaggttggaaccctcttaaaattaaat |
38108670 |
T |
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| Q |
110 |
ccattattgttgaaacattctgatgtaatctatctatgatctaataaaagat |
161 |
Q |
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| T |
38108671 |
ccattattgttgaaacattctgatgtaatctatctatgatctaataaaagat |
38108722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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