View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3761_low_29 (Length: 335)

Name: NF3761_low_29
Description: NF3761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3761_low_29
NF3761_low_29
[»] chr2 (5 HSPs)
chr2 (1-203)||(33153252-33153454)
chr2 (1-79)||(38117188-38117261)
chr2 (5-81)||(20539707-20539784)
chr2 (1-71)||(11670714-11670785)
chr2 (1-81)||(21782847-21782928)
[»] chr6 (6 HSPs)
chr6 (1-81)||(853888-853969)
chr6 (1-81)||(8365548-8365629)
chr6 (47-80)||(10649278-10649311)
chr6 (1-42)||(16766686-16766727)
chr6 (1-42)||(16833297-16833338)
chr6 (1-42)||(17841618-17841659)
[»] chr5 (6 HSPs)
chr5 (1-80)||(6247572-6247652)
chr5 (1-81)||(2436877-2436952)
chr5 (1-80)||(22013364-22013444)
chr5 (1-42)||(14674258-14674299)
chr5 (1-42)||(31084312-31084353)
chr5 (1-64)||(41995437-41995501)
[»] chr3 (8 HSPs)
chr3 (1-80)||(55401025-55401105)
chr3 (1-76)||(10954911-10954982)
chr3 (1-79)||(8587050-8587129)
chr3 (47-81)||(8842279-8842313)
chr3 (1-42)||(4987320-4987361)
chr3 (1-62)||(26290340-26290401)
chr3 (1-42)||(40052321-40052362)
chr3 (1-37)||(3164054-3164090)
[»] chr7 (3 HSPs)
chr7 (1-83)||(43027498-43027581)
chr7 (1-81)||(27944990-27945071)
chr7 (1-64)||(7438672-7438736)
[»] chr1 (6 HSPs)
chr1 (1-42)||(38078690-38078731)
chr1 (3-64)||(40917717-40917779)
chr1 (1-42)||(22881645-22881686)
chr1 (1-41)||(113289-113329)
chr1 (1-64)||(1486738-1486802)
chr1 (1-72)||(10572618-10572690)
[»] chr8 (8 HSPs)
chr8 (1-44)||(2572085-2572128)
chr8 (196-226)||(2380080-2380110)
chr8 (292-325)||(2377072-2377105)
chr8 (1-81)||(4298915-4298995)
chr8 (1-42)||(13436993-13437034)
chr8 (1-42)||(15816158-15816199)
chr8 (1-42)||(22651965-22652006)
chr8 (1-42)||(41838152-41838193)
[»] chr4 (6 HSPs)
chr4 (1-71)||(12895303-12895374)
chr4 (196-226)||(1561164-1561194)
chr4 (1-39)||(12895145-12895183)
chr4 (292-325)||(1560212-1560245)
chr4 (1-42)||(11651163-11651204)
chr4 (1-80)||(47263936-47264016)
[»] scaffold0103 (1 HSPs)
scaffold0103 (1-42)||(51800-51841)
[»] scaffold0019 (1 HSPs)
scaffold0019 (8-80)||(71679-71746)


Alignment Details
Target: chr2 (Bit Score: 163; Significance: 5e-87; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 33153454 - 33153252
Alignment:
Q  1 tatgtgattttttcaaattattagatgtttcgacgtgtcagtattttgtcgtatccggtgtccgaatccgtgcttcataggattagaacaattactgatc 100  Q
    ||||||||||||| |||| ||||||||||||| ||||||| ||| |||||||||| |||||||| || ||||||||||||||||||||||||||||||||    
T  33153454 tatgtgatttttttaaatcattagatgtttcggcgtgtcaatatcttgtcgtatctggtgtccgtattcgtgcttcataggattagaacaattactgatc 33153355  T
Q  101 cgactttactggctttctagtcgaactctgattaccatgtcccattttggtgggaaccggagggttaagacctaactcggacatatatacgatcatattt 200  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  33153354 cgactttactggctttctagtcgaactctgattaccatatcccattttggtgggaaccggagggttaagacctaactcggacatatatacgatcatatat 33153255  T
Q  201 gtt 203  Q
    |||    
T  33153254 gtt 33153252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 38117188 - 38117261
Alignment:
Q  1 tatgtgattttttcaaattattagatgtttcgacgtgtcagtattttgtcgtatccggtgtccgaatccgtgcttcata 79  Q
    |||||||||||||||||||||||| ||| ||| ||||||||     |||||| ||||||||||| ||||||||||||||    
T  38117188 tatgtgattttttcaaattattagctgtgtcggcgtgtcag-----tgtcgtgtccggtgtccgtatccgtgcttcata 38117261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 20539707 - 20539784
Alignment:
Q  5 tgattttttcaaattattagatgtttcgacgtgtcagtat-tttgtcgtatccggtgtccgaatccgtgcttcatagg 81  Q
    |||||||||||||||||||| ||| ||||||||||||| |   |||||| ||| ||||||| ||||||||||||||||    
T  20539707 tgattttttcaaattattagctgtgtcgacgtgtcagtgtccgtgtcgtgtccagtgtccgtatccgtgcttcatagg 20539784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 11670785 - 11670714
Alignment:
Q  1 tatgtgattttttcaaattattagatgtttcgacgtgtcagtat-tttgtcgtatccggtgtccgaatccgt 71  Q
    ||||||||||||||||||||||||  |  ||||||||||||| | | |||||||| ||||||||| ||||||    
T  11670785 tatgtgattttttcaaattattagtggcgtcgacgtgtcagtgtctatgtcgtattcggtgtccgtatccgt 11670714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 21782847 - 21782928
Alignment:
Q  1 tatgtgattttttcaaattattagatgtttcgacgtgtcagtattt-tgtcgtatccggtgtccgaatccgtgcttcatagg 81  Q
    ||||||||||| ||||||||||||  || ||| ||||||||| ||| |||||| ||| ||||| | || |||||||||||||    
T  21782847 tatgtgattttctcaaattattagcagtgtcggcgtgtcagtgtttgtgtcgtgtccagtgtctgtattcgtgcttcatagg 21782928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 853888 - 853969
Alignment:
Q  1 tatgtgattttttcaaattattagatgtttcgacgtgtcagtat-tttgtcgtatccggtgtccgaatccgtgcttcatagg 81  Q
    |||||||||||||||||||||||| ||| ||| |||||||| ||   |||||| ||||||||||| ||||||| ||||||||    
T  853888 tatgtgattttttcaaattattagttgtgtcggcgtgtcagcatccgtgtcgtgtccggtgtccgtatccgtgattcatagg 853969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 8365548 - 8365629
Alignment:
Q  1 tatgtgattttttcaaattattagatgtttcgacgtgtcagtat-tttgtcgtatccggtgtccgaatccgtgcttcatagg 81  Q
    |||||||| ||||||||||||||| ||| ||| ||||||||| |   |||||| || |||||||| ||||||||||||||||    
T  8365548 tatgtgatattttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtctggtgtccgtatccgtgcttcatagg 8365629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 80
Target Start/End: Complemental strand, 10649311 - 10649278
Alignment:
Q  47 tgtcgtatccggtgtccgaatccgtgcttcatag 80  Q
    |||||||||||||||||| |||||||||||||||    
T  10649311 tgtcgtatccggtgtccgtatccgtgcttcatag 10649278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 16766727 - 16766686
Alignment:
Q  1 tatgtgattttttcaaattattagatgtttcgacgtgtcagt 42  Q
    |||||||||||||||||||||||| ||| ||| |||||||||    
T  16766727 tatgtgattttttcaaattattagctgtgtcggcgtgtcagt 16766686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 16833338 - 16833297
Alignment:
Q  1 tatgtgattttttcaaattattagatgtttcgacgtgtcagt 42  Q
    |||||||||||||||||||||||| ||| ||| |||||||||    
T  16833338 tatgtgattttttcaaattattagttgtgtcggcgtgtcagt 16833297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 17841618 - 17841659
Alignment:
Q  1 tatgtgattttttcaaattattagatgtttcgacgtgtcagt 42  Q
    |||||||||||||||||||||||| ||| ||| |||||||||    
T  17841618 tatgtgattttttcaaattattagctgtgtcggcgtgtcagt 17841659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 6247652 - 6247572
Alignment:
Q  1 tatgtgattttttcaaattattagatgtttcgacgtgtcagtat-tttgtcgtatccggtgtccgaatccgtgcttcatag 80  Q
    |||||||||||||||||||||||||||| ||| ||||||||| |   | |||| ||||||||||| ||||||| |||||||    
T  6247652 tatgtgattttttcaaattattagatgtgtcggcgtgtcagtgtgcgtatcgtgtccggtgtccgcatccgtgtttcatag 6247572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 2436952 - 2436877
Alignment:
Q  1 tatgtgattttttcaaattattagatgtttcgacgtgtcagtattttgtcgtatccggtgtccgaatccgtgcttcatagg 81  Q
    |||||||||||| |||||||||||  || ||| |||||||||     ||||| ||||||||||| ||||||||||||||||    
T  2436952 tatgtgatttttgcaaattattagcggtgtcggcgtgtcagt-----gtcgtgtccggtgtccgtatccgtgcttcatagg 2436877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 22013444 - 22013364
Alignment:
Q  1 tatgtgattttttcaaattattagatgtttcgacgtgtcagtattt-tgtcgtatccggtgtccgaatccgtgcttcatag 80  Q
    ||||| |||||| ||||||||||| ||| ||| ||||||||| |   |||||| ||||||||||| |||||||||||||||    
T  22013444 tatgtaatttttccaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttcatag 22013364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 14674299 - 14674258
Alignment:
Q  1 tatgtgattttttcaaattattagatgtttcgacgtgtcagt 42  Q
    |||||||||||||||||||||||| ||| ||| |||||||||    
T  14674299 tatgtgattttttcaaattattagctgtgtcggcgtgtcagt 14674258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 31084353 - 31084312
Alignment:
Q  1 tatgtgattttttcaaattattagatgtttcgacgtgtcagt 42  Q
    |||||||||||||||||||||||| ||| ||| |||||||||    
T  31084353 tatgtgattttttcaaattattagctgtgtcggcgtgtcagt 31084312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 41995501 - 41995437
Alignment:
Q  1 tatgtgattttttcaaattattagatgtttcgacgtgtcagtat-tttgtcgtatccggtgtccg 64  Q
    |||||||||||||| ||||||||| ||| ||| ||||||||| | | |||||||||| |||||||    
T  41995501 tatgtgattttttcgaattattagttgtgtcggcgtgtcagtgtctgtgtcgtatccagtgtccg 41995437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 55401105 - 55401025
Alignment:
Q  1 tatgtgattttttcaaattattagatgtttcgacgtgtcagtattt-tgtcgtatccggtgtccgaatccgtgcttcatag 80  Q
    |||||||||||||||||||||||| ||| ||| ||| ||||| |   |||||||||||||||||| ||| |||||||||||    
T  55401105 tatgtgattttttcaaattattagttgtgtcggcgtatcagtgtccgtgtcgtatccggtgtccgtatctgtgcttcatag 55401025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 10954982 - 10954911
Alignment:
Q  1 tatgtgattttttcaaattattagatgtttcgacgtgtcagtattttgtcgtatccggtgtccgaatccgtgcttc 76  Q
    |||||||||||||||||||||||| ||| ||| ||||||||| |    |||| ||||||||||| |||||||||||    
T  10954982 tatgtgattttttcaaattattagttgtgtcggcgtgtcagtgt----tcgtgtccggtgtccgtatccgtgcttc 10954911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 8587050 - 8587129
Alignment:
Q  1 tatgtgattttttcaaattattagatgtttcgacgtgtcagtat-tttgtcgtatccggtgtccgaatccgtgcttcata 79  Q
    |||||||||||||||||||| ||||||| ||| ||||||||| |   |||| | ||||||||||| ||| ||||||||||    
T  8587050 tatgtgattttttcaaattactagatgtgtcggcgtgtcagtgtccgtgtcatgtccggtgtccgtatctgtgcttcata 8587129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 81
Target Start/End: Complemental strand, 8842313 - 8842279
Alignment:
Q  47 tgtcgtatccggtgtccgaatccgtgcttcatagg 81  Q
    |||||||||||||||||| ||||||||||||||||    
T  8842313 tgtcgtatccggtgtccgtatccgtgcttcatagg 8842279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 4987320 - 4987361
Alignment:
Q  1 tatgtgattttttcaaattattagatgtttcgacgtgtcagt 42  Q
    |||||||||||||||||||||||| ||| ||| |||||||||    
T  4987320 tatgtgattttttcaaattattagctgtgtcggcgtgtcagt 4987361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 26290401 - 26290340
Alignment:
Q  1 tatgtgattttttcaaattattagatgtttcgacgtgtcagtattttgtcgtatccggtgtc 62  Q
    ||||||||||| |||||||||||   || ||| ||||||||| | |||||||||||||||||    
T  26290401 tatgtgattttctcaaattattaatggtgtcggcgtgtcagtgtcttgtcgtatccggtgtc 26290340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 40052362 - 40052321
Alignment:
Q  1 tatgtgattttttcaaattattagatgtttcgacgtgtcagt 42  Q
    |||||||||||||||||||||||| ||| ||| |||||||||    
T  40052362 tatgtgattttttcaaattattagctgtgtcggcgtgtcagt 40052321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 3164054 - 3164090
Alignment:
Q  1 tatgtgattttttcaaattattagatgtttcgacgtg 37  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  3164054 tatgtgattttttcaaattattagctgtgtcgacgtg 3164090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 43027498 - 43027581
Alignment:
Q  1 tatgtgattttttcaaattattagatgtttcgacgtgtcagtat-tttgtcgtatccggtgtccgaatccgtgcttcataggat 83  Q
    |||||||||||||||||||||||| ||  ||| ||||||||| |   |||||| ||| ||||||| ||||||||||||||||||    
T  43027498 tatgtgattttttcaaattattagctgggtcgccgtgtcagtgtccgtgtcgtgtccagtgtccgcatccgtgcttcataggat 43027581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 27945071 - 27944990
Alignment:
Q  1 tatgtgattttttcaaattattagatgtttcgacgtgtcagtattt-tgtcgtatccggtgtccgaatccgtgcttcatagg 81  Q
    ||||| ||||| ||||||||||||  || ||| ||||||||| |   |||||| ||||||||||| ||||||||||||||||    
T  27945071 tatgtaattttctcaaattattagtggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttcatagg 27944990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 7438736 - 7438672
Alignment:
Q  1 tatgtgattttttcaaattattagatgtttcgacgtgtcagtattt-tgtcgtatccggtgtccg 64  Q
    |||||||||||||||||||||||  ||| ||| | ||||||| ||| ||||||||||| ||||||    
T  7438736 tatgtgattttttcaaattattaactgtgtcggcatgtcagtgtttatgtcgtatccgatgtccg 7438672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 38078690 - 38078731
Alignment:
Q  1 tatgtgattttttcaaattattagatgtttcgacgtgtcagt 42  Q
    |||||||||||||||||||||||| ||| |||||||||||||    
T  38078690 tatgtgattttttcaaattattagctgtgtcgacgtgtcagt 38078731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 40917779 - 40917717
Alignment:
Q  3 tgtgattttttcaaattattagatgtttcgacgtgtcagtat-tttgtcgtatccggtgtccg 64  Q
    |||||||||||||||||||||| ||| ||| |||||||||||   |||||| |||||||||||    
T  40917779 tgtgattttttcaaattattagctgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccg 40917717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 22881645 - 22881686
Alignment:
Q  1 tatgtgattttttcaaattattagatgtttcgacgtgtcagt 42  Q
    |||||||||||||||||||||||| ||| ||| |||||||||    
T  22881645 tatgtgattttttcaaattattagttgtgtcggcgtgtcagt 22881686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 113329 - 113289
Alignment:
Q  1 tatgtgattttttcaaattattagatgtttcgacgtgtcag 41  Q
    |||||||||||||||||||||||| ||| ||| ||||||||    
T  113329 tatgtgattttttcaaattattagctgtgtcggcgtgtcag 113289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 1486738 - 1486802
Alignment:
Q  1 tatgtgattttttcaaattattagatgtttcgacgtgtcagtat-tttgtcgtatccggtgtccg 64  Q
    |||||||||||||||||||||||| ||| ||  |||||||||||   ||||||||||||| ||||    
T  1486738 tatgtgattttttcaaattattagctgtgtcagcgtgtcagtatccgtgtcgtatccggtatccg 1486802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 10572618 - 10572690
Alignment:
Q  1 tatgtgattttttcaaattattagatgtttcgacgtgtcagtatt-ttgtcgtatccggtgtccgaatccgtg 72  Q
    ||||||||||| ||||||||||||  || ||| ||||||||| ||  |||||| ||||||||||| |||||||    
T  10572618 tatgtgattttctcaaattattagtggtgtcggcgtgtcagtgttcatgtcgtgtccggtgtccgtatccgtg 10572690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 2572085 - 2572128
Alignment:
Q  1 tatgtgattttttcaaattattagatgtttcgacgtgtcagtat 44  Q
    |||||||||||||||||||||||| ||| |||||||||| ||||    
T  2572085 tatgtgattttttcaaattattaggtgtgtcgacgtgtcggtat 2572128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 226
Target Start/End: Original strand, 2380080 - 2380110
Alignment:
Q  196 tatttgttgatgttgttggaagcttggtaaa 226  Q
    |||||||||||||||||||||||||||||||    
T  2380080 tatttgttgatgttgttggaagcttggtaaa 2380110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 325
Target Start/End: Complemental strand, 2377105 - 2377072
Alignment:
Q  292 atgatgatgatgaatgttgctgggtttgatgatg 325  Q
    |||| |||||||||||||||||||||||||||||    
T  2377105 atgaagatgatgaatgttgctgggtttgatgatg 2377072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 4298915 - 4298995
Alignment:
Q  1 tatgtgattttttcaaattattagatgtttcgacgtgtcagtat-tttgtcgtatccggtgtccgaatccgtgcttcatagg 81  Q
    |||||||||||||||||||||||  ||| ||| ||||| ||||| | |||||| ||| ||||||  ||||||||||||||||    
T  4298915 tatgtgattttttcaaattattaactgtgtcggcgtgttagtatctgtgtcgtgtcc-gtgtccatatccgtgcttcatagg 4298995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 13436993 - 13437034
Alignment:
Q  1 tatgtgattttttcaaattattagatgtttcgacgtgtcagt 42  Q
    |||||||||||||||||||||||| ||| ||| |||||||||    
T  13436993 tatgtgattttttcaaattattagctgtgtcggcgtgtcagt 13437034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 15816158 - 15816199
Alignment:
Q  1 tatgtgattttttcaaattattagatgtttcgacgtgtcagt 42  Q
    |||||||||||||||||||||||| ||| ||| |||||||||    
T  15816158 tatgtgattttttcaaattattagttgtgtcggcgtgtcagt 15816199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 22652006 - 22651965
Alignment:
Q  1 tatgtgattttttcaaattattagatgtttcgacgtgtcagt 42  Q
    |||||||||||||||||||||||| ||| ||| |||||||||    
T  22652006 tatgtgattttttcaaattattagctgtgtcggcgtgtcagt 22651965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 41838152 - 41838193
Alignment:
Q  1 tatgtgattttttcaaattattagatgtttcgacgtgtcagt 42  Q
    ||||||||||||| |||||||||| ||| |||||||||||||    
T  41838152 tatgtgatttttttaaattattagctgtgtcgacgtgtcagt 41838193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 12895303 - 12895374
Alignment:
Q  1 tatgtgattttttcaaattattagatgtttcgacgtgtcagtatt-ttgtcgtatccggtgtccgaatccgt 71  Q
    |||||||||||||||||||||||  ||| ||| ||||||| | ||  |||||||||||||||||| ||||||    
T  12895303 tatgtgattttttcaaattattatttgtgtcggcgtgtcattgttcgtgtcgtatccggtgtccgtatccgt 12895374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 226
Target Start/End: Original strand, 1561164 - 1561194
Alignment:
Q  196 tatttgttgatgttgttggaagcttggtaaa 226  Q
    |||||||||||||||||||||||||||||||    
T  1561164 tatttgttgatgttgttggaagcttggtaaa 1561194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 12895145 - 12895183
Alignment:
Q  1 tatgtgattttttcaaattattagatgtttcgacgtgtc 39  Q
    |||||||||||||||||||||||| ||||||| ||||||    
T  12895145 tatgtgattttttcaaattattagctgtttcggcgtgtc 12895183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 325
Target Start/End: Complemental strand, 1560245 - 1560212
Alignment:
Q  292 atgatgatgatgaatgttgctgggtttgatgatg 325  Q
    |||| |||||||||||||||||||||||||||||    
T  1560245 atgaagatgatgaatgttgctgggtttgatgatg 1560212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 11651163 - 11651204
Alignment:
Q  1 tatgtgattttttcaaattattagatgtttcgacgtgtcagt 42  Q
    ||||||||||||| |||||||||| ||| |||||||||||||    
T  11651163 tatgtgatttttttaaattattagctgtgtcgacgtgtcagt 11651204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 47264016 - 47263936
Alignment:
Q  1 tatgtgattttttcaaattattagatgtttcgacgtgtcagtattt-tgtcgtatccggtgtccgaatccgtgcttcatag 80  Q
    |||||||||||| ||||||||||| | | ||||||||||| ||||| |||||| | |  |||||| ||| |||||||||||    
T  47264016 tatgtgatttttacaaattattagctatgtcgacgtgtcaatatttgtgtcgtgttcaatgtccgtatctgtgcttcatag 47263936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 51841 - 51800
Alignment:
Q  1 tatgtgattttttcaaattattagatgtttcgacgtgtcagt 42  Q
    |||||||||||||||||||||||| ||| ||| |||||||||    
T  51841 tatgtgattttttcaaattattagctgtgtcggcgtgtcagt 51800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 71746 - 71679
Alignment:
Q  8 ttttttcaaattattagatgtttcgacgtgtcagtattttgtcgtatccggtgtccgaatccgtgcttcatag 80  Q
    ||||||||||||||||| ||| ||| ||||||||     |||||| |||| |||||| |||||||||||||||    
T  71746 ttttttcaaattattagctgtgtcggcgtgtcag-----tgtcgtgtccgatgtccgtatccgtgcttcatag 71679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University