View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3761_low_33 (Length: 305)
Name: NF3761_low_33
Description: NF3761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3761_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 28874087 - 28873800
Alignment:
| Q |
1 |
agttatggaacaatatgctcaaatttgaaatgagcattaatgcgcagagcttgggtttagcgccttggctcttctgcaacctgtgttctttttatttttc |
100 |
Q |
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| T |
28874087 |
agttatggaacaatatgctcaaatttgaaatgagcattaatgcgcagagcttgggtttagcgccttggctcttctgcaacctgtgttctttttatttttc |
28873988 |
T |
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| Q |
101 |
taaaccttctatttcctaggagaaagggctatgataatctgaattttgactgagaggtaagtagagtttgatcaaggactgttctagttaaagtcaaatt |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28873987 |
taaaccttctatttcctaggagaaagggctatggtaatctgaattttgactgagaggtaagtagagtttgatcaaggactgttctagttaaagtcaaatt |
28873888 |
T |
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| Q |
201 |
caagtacttacggttgaatcaaccttatttgaagttcattaaccacttgatgtgttgatcgatttacattgatgttctttagtgttat |
288 |
Q |
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| T |
28873887 |
caagtacttacggttgaatcaaccttatttgaagttcattaaccacttgatgtgttgatcgatttacattgatgttctttagtgttat |
28873800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 28858746 - 28858466
Alignment:
| Q |
1 |
agttatggaacaatatgctcaaatttgaaatgagcattaatgcgcagagcttgggtttagcgccttggctcttctgcaacctgtgttctttttatttttc |
100 |
Q |
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||||||||||||| ||||||||||||| |||||||||||||| | | |||||| ||| ||||||||||||||||||| |||||| |||||||||||||| |
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| T |
28858746 |
agttatggaacaaaatgctcaaatttggaatgagcattaatgtgtaaggcttggatttggcgccttggctcttctgcagcctgtgctctttttatttttc |
28858647 |
T |
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| Q |
101 |
taaaccttctatttcctaggagaaagggctatgataatctgaattttgactgagaggtaagtagagtttgatcaaggactgttctagttaaagtcaaatt |
200 |
Q |
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||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||| ||||| |||| |
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| T |
28858646 |
taaaccttccgtttcctaggagaaagggctgtgataatctgaattttgactgagaggtaagtaaagtttgatcaaggattgttccagtcaaagttgaatt |
28858547 |
T |
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| Q |
201 |
caagtacttacggttgaatcaaccttatttgaagttcattaaccacttgatgtgttgatcgatttacattgatgttctttagtgt |
285 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| |||||| || |||||||||| ||||| |||||||| |
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| T |
28858546 |
caagtacttacggttgaatcaaccttatctgaagttcattaaccatctgatgtctt----gatttacattaatgttgtttagtgt |
28858466 |
T |
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