View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3761_low_4 (Length: 607)
Name: NF3761_low_4
Description: NF3761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3761_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 296 - 599
Target Start/End: Original strand, 3064952 - 3065255
Alignment:
| Q |
296 |
gtaggttacagacaagaatatttatctaatttagtaaatttaacttctcactctcgaatccaggtaaccatatctacaagttcctcgctctttgttattg |
395 |
Q |
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| T |
3064952 |
gtaggttacagacaagaatatttatctaatttagtaaatttaacttctcactctcgaatccaggtaaccatatctacaagttcctcgctctttgttattg |
3065051 |
T |
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| Q |
396 |
actttttaactacattaggttatagttttacagggttcaagttggatgcaatcacattgctagagtgacagtggctgattgttgattattgaatatgttt |
495 |
Q |
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| T |
3065052 |
actttttaactacattaggttatagttttacagggttcaagttggatgcaatcacattgctagagtgacagtggctgattgttgattattgaatatgttt |
3065151 |
T |
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| Q |
496 |
gtgtcattgcatgtttgtacacatgcaaatttcagtgtagttgaactagaacaattacgctatgtatgtagtgcttcatggcctaattacctattttctg |
595 |
Q |
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| T |
3065152 |
gtgtcattgcatgtttgtacacatgcaaatttcagtgtagttgaactagaacaattacgctatgtatgtagtgcttcatggcctaattacctattttctg |
3065251 |
T |
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| Q |
596 |
tgct |
599 |
Q |
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|||| |
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| T |
3065252 |
tgct |
3065255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 3064658 - 3064888
Alignment:
| Q |
1 |
ctgagccactagtcttccaatttggtccatatgatttatagatannnnnnngtgtccatcaaaattaaagccattagtccttatagtcaactcatactaa |
100 |
Q |
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| T |
3064658 |
ctgagccactagtcttccaatttggtccatatgatttatagatatttttttgtgtccatcaaaattaaagccattagtccttatagtcaactcatactaa |
3064757 |
T |
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| Q |
101 |
atcaacaaagaagttggcttaactttggagataacaaacgtatgaaaactttccctttctgatagaaaattaaaataaaaatacattacaattttgacca |
200 |
Q |
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| T |
3064758 |
atcaacaaagaagttggcttaactttggagataacaaacgtatgaaaactttccctttttgatagaaaattaaaataaaaatacattacaattttgacca |
3064857 |
T |
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| Q |
201 |
tggacttctgtaaaatggactttcaggacag |
231 |
Q |
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| T |
3064858 |
tggacttctgtaaaatggactttcaggacag |
3064888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 399 - 461
Target Start/End: Original strand, 3051950 - 3052012
Alignment:
| Q |
399 |
ttttaactacattaggttatagttttacagggttcaagttggatgcaatcacattgctagagt |
461 |
Q |
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| T |
3051950 |
ttttaactatcttagattatagttttacagggttcaaatttgatgcaatcacattactagagt |
3052012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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