View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3761_low_40 (Length: 255)
Name: NF3761_low_40
Description: NF3761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3761_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 30 - 236
Target Start/End: Complemental strand, 6744415 - 6744208
Alignment:
| Q |
30 |
gagtaacatcatggtttacactccaacattttttagtgactcacaactttgtcttgtgttgcaacacagttctctcgattttgaaacaacaaaaacatga |
129 |
Q |
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| T |
6744415 |
gagtaacatcatggtttacactccaacattttatagtgactcacaactttgtcttgtgttgcaacacagttctctcgattttgaaacaaccaaaacatga |
6744316 |
T |
|
| Q |
130 |
tattattgaccattggactgatatgcatcaaataaactatgccttagattcacattattcctttcaaagaggaaaatcc-agaacataatatatctaaaa |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6744315 |
tattattgaccattggactgatatgcatcaaataaactatgccttagattcacattattcctttcaaagaggaaaatccaagaacataatatatctaaaa |
6744216 |
T |
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| Q |
229 |
cacattac |
236 |
Q |
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|| ||||| |
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| T |
6744215 |
caaattac |
6744208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 30 - 236
Target Start/End: Complemental strand, 4433811 - 4433603
Alignment:
| Q |
30 |
gagtaacatcatggtttacactccaacattttttagtgactcacaactttgtcttgtgttgcaacacagttctctcgattttgaaacaacaaaaacatga |
129 |
Q |
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|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
4433811 |
gagtaacatcatggtttacactccaacattttatagtgagtcacaactttgtcttgtgttgcaacacagttctctcgattttgcaacaaccaaaacatga |
4433712 |
T |
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| Q |
130 |
tattattg--accattggactgatatgcatcaaataaactatgccttagattcacattattcctttcaaagaggaaaatccagaacataatatatctaaa |
227 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4433711 |
tattattgtaaccattggactgatatgcatcaaataaactatgccttagattcacattattcctttcaaagaggaagatccagaacataatatatctaaa |
4433612 |
T |
|
| Q |
228 |
acacattac |
236 |
Q |
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||| ||||| |
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| T |
4433611 |
acaaattac |
4433603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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