View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3761_low_43 (Length: 248)
Name: NF3761_low_43
Description: NF3761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3761_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 46743234 - 46742998
Alignment:
| Q |
1 |
aattttcattgtatatgtatgtttttaccataaacttcaaaaaattataaaaagagaccaacacattttaaaaatgaataattttagtactctagccaaa |
100 |
Q |
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| T |
46743234 |
aattttcattgtatatgtatgcttttaccataaacttcaaaaaattataaaaagagaccaacacattttaaaaatgaataattttagtactctagccaaa |
46743135 |
T |
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| Q |
101 |
caaaaatatttgaaaatgaaaacaattcaataaaaacatttgtataagcgtatacttataattttcctaaaatttccaatcaccccatttaattacattc |
200 |
Q |
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| T |
46743134 |
caaaaatatttaaaaatgaaaacaattcaataaaaacatttgtataagcgtatacttataattttcctaaaatttccaatcaccccatttaattacattc |
46743035 |
T |
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| Q |
201 |
aaaaataaatttgaatggtctttgaaaacatgaacct |
237 |
Q |
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| T |
46743034 |
aaaaataaatttgaatggtctttgaaaacatgaacct |
46742998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 34114217 - 34114172
Alignment:
| Q |
97 |
caaacaaaaatatttgaaaatgaaaacaattcaataaaaacatttg |
142 |
Q |
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| T |
34114217 |
caaacaaaaatatttaaaaatgaaaacaatttaattaaatcatttg |
34114172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 35750883 - 35750932
Alignment:
| Q |
82 |
ttttagtactctagccaaacaaaaatatttgaaaatgaaaacaattcaat |
131 |
Q |
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| T |
35750883 |
ttttattactctattcaaacaaaaatatttataaatgaaaacaattcaat |
35750932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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