View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3761_low_44 (Length: 247)
Name: NF3761_low_44
Description: NF3761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3761_low_44 |
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| [»] scaffold0531 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: scaffold0531 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 3343 - 3113
Alignment:
| Q |
16 |
ctttatattgtggtgcctcaacaacttgtagtagaagttggagtgaacattgtctacatggtcaccggaggtgcatctttgcggaaggtccacgataccg |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||| ||| ||||| |||| | |
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| T |
3343 |
ctttatattgtggtgcctcaacaacttgtagtagaagttggggtgaacattgtttacatggtcaccggaggtgcatcactgcgaaagttccacaatacag |
3244 |
T |
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| Q |
116 |
tgtgtccaagttgcaaaaatatcaaattgacgtttttcattatgatctttgcctctgctcaatttgtattgtcgcatctacccgacttcaactccatttc |
215 |
Q |
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||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||| |
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| T |
3243 |
tgtgtccaagttgcaaaaatatcaaattgacatatttcattatgatctttgcctctgctcaatttgtattgtgtcatctaccaaacttgaactccatttc |
3144 |
T |
|
| Q |
216 |
tggtgtatctttggttgcagcagtaatgtcc |
246 |
Q |
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||||||||||||||| |||||||| |||||| |
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| T |
3143 |
tggtgtatctttggtggcagcagtcatgtcc |
3113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 8031989 - 8032219
Alignment:
| Q |
16 |
ctttatattgtggtgcctcaacaacttgtagtagaagttggagtgaacattgtctacatggtcaccggaggtgcatctttgcggaaggtccacgataccg |
115 |
Q |
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|||||||||||||| |||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||| ||||| |||| | |
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| T |
8031989 |
ctttatattgtggttcctcaacaacttatagtagaagttgggggcgacattgtctacatggtcaccggaggtgcatcattgcggaagttccacaatacag |
8032088 |
T |
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| Q |
116 |
tgtgtccaagttgcaaaaatatcaaattgacgtttttcattatgatctttgcctctgctcaatttgtattgtcgcatctacccgacttcaactccatttc |
215 |
Q |
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| T |
8032089 |
tgtgttcaagttgcaaaaatatcaaattgacctatttcattatgatctttgcctctgctcaatttgtattgtgtcatctaccaaacttgaactccatttc |
8032188 |
T |
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| Q |
216 |
tggtgtatctttggttgcagcagtaatgtcc |
246 |
Q |
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| T |
8032189 |
cggtgtatccttggttgcagcagtcatgtcc |
8032219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 22 - 246
Target Start/End: Complemental strand, 7971814 - 7971590
Alignment:
| Q |
22 |
attgtggtgcctcaacaacttgtagtagaagttggagtgaacattgtctacatggtcaccggaggtgcatctttgcggaaggtccacgataccgtgtgtc |
121 |
Q |
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|||||| |||||||||||||||| ||| | || || | ||||||||||||||||||||||||||||||| |||| || | ||| |||| || |||| |
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| T |
7971814 |
attgtgatgcctcaacaacttgtggtacaggtcgggtcggacattgtctacatggtcaccggaggtgcatcattgcaaaaatttcacaatacagtctgtc |
7971715 |
T |
|
| Q |
122 |
caagttgcaaaaatatcaaattgacgtttttcattatgatctttgcctctgctcaatttgtattgtcgcatctacccgacttcaactccatttctggtgt |
221 |
Q |
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| T |
7971714 |
caagttgcaaaccaatcaaattgagctttttcattatgatctttgcctctgctcattttgtattgtctcatctaccaaacttgaactccatttccggtgt |
7971615 |
T |
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| Q |
222 |
atctttggttgcagcagtaatgtcc |
246 |
Q |
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||||||||| ||||| || |||||| |
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| T |
7971614 |
atctttggtggcagccgtcatgtcc |
7971590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 22 - 246
Target Start/End: Original strand, 8041874 - 8042098
Alignment:
| Q |
22 |
attgtggtgcctcaacaacttgtagtagaagttggagtgaacattgtctacatggtcaccggaggtgcatctttgcggaaggtccacgataccgtgtgtc |
121 |
Q |
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|||||| |||||||||||||||| ||| | || || | ||||||||||||||||||||||||||||||| |||| || | ||| |||| || |||| |
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| T |
8041874 |
attgtgatgcctcaacaacttgtggtacaggtcgggtcggacattgtctacatggtcaccggaggtgcatcattgcaaaaatttcacaatacagtctgtc |
8041973 |
T |
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| Q |
122 |
caagttgcaaaaatatcaaattgacgtttttcattatgatctttgcctctgctcaatttgtattgtcgcatctacccgacttcaactccatttctggtgt |
221 |
Q |
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||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| |||| ||||||||||| ||||| |
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| T |
8041974 |
caagttgcaaaccaatcaaattgagctttttcattatgatctttgcctctgctcattttgtattgtctcatctaccaaacttgaactccatttccggtgt |
8042073 |
T |
|
| Q |
222 |
atctttggttgcagcagtaatgtcc |
246 |
Q |
| |
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||||||||| ||||| || |||||| |
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| T |
8042074 |
atctttggtggcagccgtcatgtcc |
8042098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 247
Target Start/End: Complemental strand, 7979388 - 7979157
Alignment:
| Q |
16 |
ctttatattgtggtgcctcaacaacttgtagtagaagttggagtgaacattgtctacatggtcaccggaggtgcatctttgcggaaggtccacgataccg |
115 |
Q |
| |
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||||||||||||||||||||||||||||| |||||| |||| || |||||||| || |||||||| || || |||| |||| ||| |||| |||| | |
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| T |
7979388 |
ctttatattgtggtgcctcaacaacttgtggtagaaattggtgttaacattgtttatatggtcactgggggaacatcattgcaaaagttccatgatattg |
7979289 |
T |
|
| Q |
116 |
tgtgtccaagttgcaaaaatatcaaattgacgtttttcattatgatctttgcctctgctcaatttgtattgtcgcatctacccgacttcaactccatttc |
215 |
Q |
| |
|
|||||||||| |||||||| || || ||||| | |||||| ||||| ||||| || | ||| ||||| || || ||||| || || |||||||| ||||| |
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| T |
7979288 |
tgtgtccaagctgcaaaaagataaagttgacctatttcatcatgatatttgcttcagttcactttgtgttatctcatctccctgatttcaactcaatttc |
7979189 |
T |
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| Q |
216 |
tggtgtatctttggttgcagcagtaatgtcct |
247 |
Q |
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|||||| || |||| |||||||| ||||||| |
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| T |
7979188 |
tggtgtgtccttggcagcagcagtcatgtcct |
7979157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 22 - 247
Target Start/End: Complemental strand, 41382213 - 41381988
Alignment:
| Q |
22 |
attgtggtgcctcaacaacttgtagtagaagttggagtgaacattgtctacatggtcaccggaggtgcatctttgcggaaggtccacgataccgtgtgtc |
121 |
Q |
| |
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|||||| |||||||||||||||| ||| ||||||| ||| ||||||||||||||||||||||||||||||| |||| || | ||| |||| || |||| |
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| T |
41382213 |
attgtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcaccggaggtgcatcattgcaaaaatttcacaatacagtttgtc |
41382114 |
T |
|
| Q |
122 |
caagttgcaaaaatatcaaattgacgtttttcattatgatctttgcctctgctcaatttgtattgtcgcatctacccgacttcaactccatttctggtgt |
221 |
Q |
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|
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||| ||||| |||| |
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| T |
41382113 |
caagttgcaaaccaatcaaattgagctttttcattatgatctttgcctctgctcaatttgtattgtgtcatctacccaacctcaactccctttctagtgt |
41382014 |
T |
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| Q |
222 |
atctttggttgcagcagtaatgtcct |
247 |
Q |
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|||||| ||||||||||| ||||||| |
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| T |
41382013 |
atcttttgttgcagcagttatgtcct |
41381988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 14198782 - 14198574
Alignment:
| Q |
19 |
tatattgtggtgcctcaacaacttgtagtagaagttggagtgaacattgtctacatggtcaccggaggtgcatctttgcggaaggtccacgataccgtgt |
118 |
Q |
| |
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|||||||| ||||| ||||||||| | || ||||| || || ||||||||||||||||| |||||||| |||||||| |||| | || |||||||||| |
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| T |
14198782 |
tatattgttgtgccacaacaacttattgttgaagtcggcgttaacattgtctacatggtaaccggaggaaaatctttgcagaagtttcatgataccgtgt |
14198683 |
T |
|
| Q |
119 |
gtccaagttgcaaaaatatcaaattgacgtttttcattatgatctttgcctctgctcaatttgtattgtcgcatctacccgacttcaactccatttctgg |
218 |
Q |
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|| | ||||||||| ||||||||||| | ||| || ||||| |||||||||| ||| ||||| ||||| || || || |||| ||||| |||||||| |
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| T |
14198682 |
gttccgattgcaaaaaaatcaaattgacttattttataatgatttttgcctctgttcactttgtcttgtctcacctccctaacttgaactctatttctgg |
14198583 |
T |
|
| Q |
219 |
tgtatcttt |
227 |
Q |
| |
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||| ||||| |
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| T |
14198582 |
tgtctcttt |
14198574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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