View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3761_low_53 (Length: 214)
Name: NF3761_low_53
Description: NF3761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3761_low_53 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 28673495 - 28673681
Alignment:
| Q |
1 |
ttaacattgtgtcattgtcataaaacgacatcaatatcaatatgatatacttgcgatatgttcattcgattgagctcatccaaacaacattgaagatggc |
100 |
Q |
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| T |
28673495 |
ttaacattgtgtcattgtcataaaacgacatcaatatcaatatgatatacttgcgatatgttcattcgattgagctcatccaaacaacattgaagatggc |
28673594 |
T |
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| Q |
101 |
gccaacaacagttgaggatttgaagctaaagttattcacagacgagctttctcaacttgcaattggcccgccatgcagagaggttgctcatggcctt |
197 |
Q |
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| T |
28673595 |
gccaacaacagttgaggatttgaagctaaagttattcacagacgagctttctcaacttg----------gccatgcagagaggttgctcatggcctt |
28673681 |
T |
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Target: chr2 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 70 - 159
Target Start/End: Original strand, 37564010 - 37564099
Alignment:
| Q |
70 |
ttgagctcatccaaacaacattgaagatggcgccaacaacagttgaggatttgaagctaaagttattcacagacgagctttctcaacttg |
159 |
Q |
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||||||||||||||||| ||||||||||||||||||| | | |||||| |||||||||| |||||||||| |||| |||||||||||| |
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| T |
37564010 |
ttgagctcatccaaacagtattgaagatggcgccaacatcggatgaggaattgaagctaagattattcacaggcgaggtttctcaacttg |
37564099 |
T |
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