View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3761_low_54 (Length: 213)
Name: NF3761_low_54
Description: NF3761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3761_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 8 - 198
Target Start/End: Complemental strand, 45275839 - 45275649
Alignment:
| Q |
8 |
aggagcagagaagaaagttagtgtttcttcatcactaagtaatggaatcgcgggaataagaaaaagtcttgtattttatcaaggaaaatctccaaatgga |
107 |
Q |
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| T |
45275839 |
aggatcagacaagaaagttagtgtttcttcatcactaagtaatggaatcgcgggaataagaaaaagtcttgtattttatcaaggaaaatctccaaatgga |
45275740 |
T |
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| Q |
108 |
tctcgaactcattggatcatgcatgaatatcgcctagttagcttaggaactactgcttgcaatcaggtaattaatattccactaatcatat |
198 |
Q |
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| T |
45275739 |
tctcgaactcattggatcatgcatgaatatcgcctagttagcttaggaactaccgcttgcaatcaggtaattaatattccattaatcatat |
45275649 |
T |
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Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 64 - 142
Target Start/End: Complemental strand, 40363838 - 40363760
Alignment:
| Q |
64 |
taagaaaaagtcttgtattttatcaaggaaaatctccaaatggatctcgaactcattggatcatgcatgaatatcgcct |
142 |
Q |
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| T |
40363838 |
taagaaaaactctagttttctatgaagggaaatccccaaatgggtctagaactgattggatcttgcatgaatatcgcct |
40363760 |
T |
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