View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3761_low_55 (Length: 203)

Name: NF3761_low_55
Description: NF3761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3761_low_55
NF3761_low_55
[»] chr7 (1 HSPs)
chr7 (101-188)||(7503672-7503760)
[»] scaffold0041 (1 HSPs)
scaffold0041 (101-188)||(33571-33659)
[»] chr2 (1 HSPs)
chr2 (101-188)||(18293139-18293227)
[»] chr6 (1 HSPs)
chr6 (111-151)||(24158677-24158717)


Alignment Details
Target: chr7 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 101 - 188
Target Start/End: Original strand, 7503672 - 7503760
Alignment:
Q  101 tcatcaccacataattgtcaatccaatcacatcttttg-tggagtcttgaggtgagaatcgttttgttgtgctttctctctattctctg 188  Q
    |||||||||||||||||||||||||||| ||||||||  |||||||||||||| ||||| || ||||||||||||||||||||||||||    
T  7503672 tcatcaccacataattgtcaatccaatcgcatctttttatggagtcttgaggtaagaattgtgttgttgtgctttctctctattctctg 7503760  T

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Target: scaffold0041 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 101 - 188
Target Start/End: Complemental strand, 33659 - 33571
Alignment:
Q  101 tcatcaccacataattgtcaatccaatcacatcttttg-tggagtcttgaggtgagaatcgttttgttgtgctttctctctattctctg 188  Q
    |||||||||||||||||||||||||||| ||||||||  |||||||||||||| ||||| || ||||| ||||||||||||||||||||    
T  33659 tcatcaccacataattgtcaatccaatcgcatctttttatggagtcttgaggtaagaattgtgttgttatgctttctctctattctctg 33571  T

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Target: chr2 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 101 - 188
Target Start/End: Complemental strand, 18293227 - 18293139
Alignment:
Q  101 tcatcaccacataattgtcaatccaatcacatcttttg-tggagtcttgaggtgagaatcgttttgttgtgctttctctctattctctg 188  Q
    ||||||||||||| |||||||||||||| ||||||||  |||||||||||||| ||||| || ||||||||||||||||||||||||||    
T  18293227 tcatcaccacatagttgtcaatccaatcgcatctttttatggagtcttgaggtaagaattgtgttgttgtgctttctctctattctctg 18293139  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 24158677 - 24158717
Alignment:
Q  111 ataattgtcaatccaatcacatcttttgtggagtcttgagg 151  Q
    |||||||||||||||||| |||||||| ||||| |||||||    
T  24158677 ataattgtcaatccaatcgcatcttttatggagccttgagg 24158717  T

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