View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3761_low_8 (Length: 585)
Name: NF3761_low_8
Description: NF3761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3761_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 452; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 14 - 568
Target Start/End: Original strand, 42082876 - 42083408
Alignment:
| Q |
14 |
caaagggaagataatcctcctgattaggacaccaaggaaatccattaagcagcaacttcttgtcaataatttgtggaaatttcattctgaatgtttcgag |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
42082876 |
caaagggaagataatcctcctgattaggacaccaaggaaatccattaagcagcaacttcttgtcaataatttgtggtaagttcattctgaatgtttcgag |
42082975 |
T |
|
| Q |
114 |
ataccatatcaaacctgtcaaactgcattgagtaggatgcacggccctctgtcagcaccctaagtgtaccgacatacataaacatctcagcaatgggtac |
213 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42082976 |
ataccgtatcaaacctgtcaaactgcattgagtaggatgcacggccctctgtcagcaccctaagtgtaccgacatacagaaacatctcagc--------- |
42083066 |
T |
|
| Q |
214 |
taatgactcaaccacctgttttcacaaccaccaaaaggaagaaaacaatattcagttctagatgatacaacaaacacaactgagacattgacaacgataa |
313 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42083067 |
-------------acctgttttcacaaccaccaaaaggaagaaaacaatattcagttctagatgatacaacaaacacaactgagacattgacatcgataa |
42083153 |
T |
|
| Q |
314 |
taatttgaaaaatggaagaaattgaatgtaactacaagtgtcggacaccagatacgtctttcttgaatatgaagcatcggtgctacatagctttcaaata |
413 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
42083154 |
taatttgaaaaatggaagaaattgaatgtaactacaagtgtcggacaccagatacgtctttctttaatatgaagcatcggtgctgcatagctttcaaata |
42083253 |
T |
|
| Q |
414 |
attaatatcttaaaatttaataaatgaacatggacgataaggttttgtgacttacgtagagtttatctggtttctcactaacacttatgatttggcctct |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42083254 |
attaatatcttaaaatttaataaatgaacatggacgataaggttttgtgacttacgtagagtttatctggtttctcaccaacacttatgatttggcctct |
42083353 |
T |
|
| Q |
514 |
tcttctgctgagatcaccaagtacatcttcataatgttcttcaggagtaacaact |
568 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42083354 |
tcttctgctgagatcaccaagtacatcttcataatgttcttcaggagtaacaact |
42083408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 298 - 568
Target Start/End: Original strand, 42086665 - 42086925
Alignment:
| Q |
298 |
acattgacaacgataataatttgaaaaatggaagaaattgaatgtaactacaagtgtcggacaccagatacgtctttcttgaatatgaagcatcggtgct |
397 |
Q |
| |
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||||||||| | |||| ||||| ||||||||| |||||||||||||||||||||| | |||||||||||||||| || ||||||||| ||| |||| |
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| T |
42086665 |
acattgacatcaataacaattttaaaaatggatgaaattgaatgtaactacaagtattggacaccagatacgtcatt----aatatgaagtgtcg-tgct |
42086759 |
T |
|
| Q |
398 |
acatagctttcaaataattaatatcttaaaatttaataaatgaacatggacgataaggttttgtgacttacgtagagtttatctggtttctcactaacac |
497 |
Q |
| |
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||||||||||||||| || | ||| |||||||||| ||| ||||||| || | ||||||||||||||| | |||| | ||||||| |||| || || |
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| T |
42086760 |
acatagctttcaaatcat----accttcaaatttaatatatgcacatgga-gaaagggttttgtgacttaccttgagtccacctggtttgtcaccaaaac |
42086854 |
T |
|
| Q |
498 |
ttatgatttggcctcttcttctgctgagatcaccaagtacatcttcataatgttcttcaggagtaacaact |
568 |
Q |
| |
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| ||||||||||||||||| | |||||||||||| ||||||| | ||||||||||||||||||||||| |
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|
| T |
42086855 |
tattgatttggcctcttcttgagttgagatcaccaattacatctcctaaatgttcttcaggagtaacaact |
42086925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 9 - 273
Target Start/End: Original strand, 42086356 - 42086611
Alignment:
| Q |
9 |
agtagcaaagggaagataatcctcctgattaggacaccaaggaaatccattaagcagcaacttcttgtcaataatttgtggaaatttcattctgaatgtt |
108 |
Q |
| |
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|||| |||| ||||||||| |||| || |||||||||||||||||| |||| |||| ||||||||| || | ||||||| || || ||||||||||| |
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| T |
42086356 |
agtatcaaaaggaagataaccctcgtggttaggacaccaaggaaataaattatgcagaaacttcttg-cact--tttgtggcaagttgattctgaatgtg |
42086452 |
T |
|
| Q |
109 |
tcgagataccatatcaaacctgtcaaactgcattgagtaggatgcacggccctctgtcagcaccctaagtgtaccgacatacataaacatctcagcaatg |
208 |
Q |
| |
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| ||| ||||| ||||||| || | || ||||| ||||| |||||||| |||| ||||| | | || ||||||| ||||||| |||||||||||||| |
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|
| T |
42086453 |
ttgaggtaccacatcaaacatggctaattgcatagagtatgatgcacgaccctttgtcatccctcttagtgtactgacatactgaaacatctcagcaaga |
42086552 |
T |
|
| Q |
209 |
ggtactaatgactcaaccacctgttttcacaaccaccaaaaggaagaaaacaatattcagttcta |
273 |
Q |
| |
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||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||| |
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|
| T |
42086553 |
ggtactaatgaatcaaccacctgtttt------caccaaaaggaagaaaacaatgttcagttcta |
42086611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 309 - 360
Target Start/End: Complemental strand, 22284533 - 22284482
Alignment:
| Q |
309 |
gataataatttgaaaaatggaagaaattgaatgtaactacaagtgtcggaca |
360 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||| || |||||||||| |
|
|
| T |
22284533 |
gataataatttgaaaaatggaaaaatttgaatgtaactgcatgtgtcggaca |
22284482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 349
Target Start/End: Original strand, 37603915 - 37603961
Alignment:
| Q |
303 |
gacaacgataataatttgaaaaatggaagaaattgaatgtaactaca |
349 |
Q |
| |
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|||| |||||| |||||||||||||||||||||||||||||| |||| |
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| T |
37603915 |
gacaccgataacaatttgaaaaatggaagaaattgaatgtaaataca |
37603961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 292 - 356
Target Start/End: Original strand, 3262022 - 3262086
Alignment:
| Q |
292 |
actgagacattgacaacgataataatttgaaaaatggaagaaattgaatgtaactacaagtgtcg |
356 |
Q |
| |
|
||||| ||||||||| |||||||||| ||||| |||||||||||| ||||||||| |||||| |
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|
| T |
3262022 |
actgacacattgacatttataataattttcaaaatagaagaaattgaaagtaactacatgtgtcg |
3262086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 347
Target Start/End: Original strand, 6933139 - 6933194
Alignment:
| Q |
292 |
actgagacattgacaacgataataatttgaaaaatggaagaaattgaatgtaacta |
347 |
Q |
| |
|
||||| |||| |||| ||||| || ||||||||||||||||||||||| ||||||| |
|
|
| T |
6933139 |
actgacacatcgacaccgatagtattttgaaaaatggaagaaattgaaagtaacta |
6933194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 354
Target Start/End: Original strand, 18626931 - 18626976
Alignment:
| Q |
309 |
gataataatttgaaaaatggaagaaattgaatgtaactacaagtgt |
354 |
Q |
| |
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|||||||||||||||| ||||||||| ||||| |||||||| |||| |
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| T |
18626931 |
gataataatttgaaaactggaagaaactgaatataactacatgtgt |
18626976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 303 - 349
Target Start/End: Original strand, 30922528 - 30922574
Alignment:
| Q |
303 |
gacaacgataataatttgaaaaatggaagaaattgaatgtaactaca |
349 |
Q |
| |
|
||||| |||||||||| |||||||| || |||||||||||||||||| |
|
|
| T |
30922528 |
gacaatgataataattagaaaaatgcaataaattgaatgtaactaca |
30922574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 298 - 349
Target Start/End: Complemental strand, 8217086 - 8217034
Alignment:
| Q |
298 |
acattgacaacgataataatttga-aaaatggaagaaattgaatgtaactaca |
349 |
Q |
| |
|
|||| ||||||||||||||||| | ||||| |||| ||||||||||||||||| |
|
|
| T |
8217086 |
acatagacaacgataataattttagaaaatagaaggaattgaatgtaactaca |
8217034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 309 - 345
Target Start/End: Original strand, 19629033 - 19629069
Alignment:
| Q |
309 |
gataataatttgaaaaatggaagaaattgaatgtaac |
345 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
19629033 |
gataatactttgaaaaatggaagtaattgaatgtaac |
19629069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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