View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3762_high_11 (Length: 518)
Name: NF3762_high_11
Description: NF3762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3762_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 14 - 491
Target Start/End: Original strand, 35326424 - 35326897
Alignment:
| Q |
14 |
agcaaaggatccaaattcacagtaaaaagaagaagaagaatatgttatgttttattttgcttcctaatctattagatnnnnnnntcctagtcacctttca |
113 |
Q |
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| T |
35326424 |
agcaaaggatccaaattcacagtaaaaagaagaagaataatatgttatgttttattttgcttcctaatctattagataaaaaa-tcctagtcacctttca |
35326522 |
T |
|
| Q |
114 |
atttaatatcaacaatcaacatgcttctctacttttttgttttcatgaaggaatccaagtatgaaacaaaacatgagaaaattcagatgcttcaagaaaa |
213 |
Q |
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| T |
35326523 |
atttaatatcaacaatcaacatgcttctctacttttttgttttcatgaaggaatccaagtatgaaacaaaacatgagaaaattcagatgcttcaagaaaa |
35326622 |
T |
|
| Q |
214 |
gcttccacagaaggagtttaagtagaaagtagcattttaaaaaacctataaaaggaataatcactcagctaagttaagttcacaaaaggccctttgaatg |
313 |
Q |
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| T |
35326623 |
gcttccacagaaggagtttaagtagaaagtagcattttaaaaaacttataaaaggaataatcactcagctaagttaagttcacaaaaggccctttgaatg |
35326722 |
T |
|
| Q |
314 |
gaatagccaaccgaattccaaaagataaagnnnnnnnnnnnnnnnnnaagaaaagcatactcacaaataagagaaaatgtgaaacagtttattaaactcc |
413 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35326723 |
gaatagccaaccgaattccaaaagataaagttttctttttcatttttaagaaaagcatactcacaaataagagaaaatgtgaaacagtttattaaactcc |
35326822 |
T |
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| Q |
414 |
atattatannnnnnnatatatatctgtggggtcaatccatgatgatgtatatataccaacagctagaagaacaatata |
491 |
Q |
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| T |
35326823 |
atattatatttttttatatatatctgtggggtcaatcc---atgatgtatatataccaacagctagaagatcaatata |
35326897 |
T |
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