View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3762_high_12 (Length: 495)
Name: NF3762_high_12
Description: NF3762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3762_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 38634053 - 38633748
Alignment:
| Q |
1 |
atctactatatcggtaatacaatgatttagctattgacttttgaaacttatgcctggtttcatttaggagtgatcattattatcatgatccattttgctg |
100 |
Q |
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| T |
38634053 |
atctactatatcggta-tacaatgatttagctattgacttttgaaacttatgcctggtttcatttaggagtgatcattattatcatgatccattttgctg |
38633955 |
T |
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| Q |
101 |
nnnnnnnnaagtgtgttacaaagtttggaacaatcttagagaatcatgacccctgcctcacaggttgattctttttgtagttatatgattgaatggaatt |
200 |
Q |
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| T |
38633954 |
ttttttttaagtgtgttacaaagtttggaacaatcttagagaatcatgaccc-tgcctcacaggttgattctttttgtagttatatgattgaatggaatt |
38633856 |
T |
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| Q |
201 |
ttaatatttgcaaattcttgtgttggtttatttgtctatggtgtgattgcacaatttaccttctctttccattttttgtaacttctattcataactttaa |
300 |
Q |
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| T |
38633855 |
ttaatatttgcaaattcttgtgttggtttatttgtctatggtgtgattgcacactttaccttctctttccattttttgtaacttctattcataactttaa |
38633756 |
T |
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| Q |
301 |
acatgaac |
308 |
Q |
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| T |
38633755 |
acatgaac |
38633748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 255 - 487
Target Start/End: Complemental strand, 38633745 - 38633508
Alignment:
| Q |
255 |
tttaccttctctttccattttttgtaacttctattcataactttaaacatgaacnnnnnnnn------cacttttatagtctaactgtattttattatca |
348 |
Q |
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| T |
38633745 |
tttaccttctctttccattttttgtaacttctattcataactttaaacatgaacaaaaaaaaaaaaaacacttttataatctaactgtattttattatca |
38633646 |
T |
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| Q |
349 |
aatttttcaacaagcaaacagcgataattttgtctgtccttgatattttttggaggaattccgattttattttaatatcataactgtgaaaataatgtta |
448 |
Q |
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| T |
38633645 |
aatttttcaacaagcaaacagcgataattttgtcagtccttgatattttt-ggaggaattccgactgtattttaatatcataactgtgaaaataatgtta |
38633547 |
T |
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| Q |
449 |
gtttatttgccttgttggcttcatatcgttttgatgatg |
487 |
Q |
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| T |
38633546 |
gtttatttgccttgttggcttcatatcgtttttatgatg |
38633508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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