View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3762_high_13 (Length: 492)
Name: NF3762_high_13
Description: NF3762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3762_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 138 - 474
Target Start/End: Original strand, 42327183 - 42327519
Alignment:
| Q |
138 |
tttatagtgtttagtcttaaaactaaaaaacacatatattcccatattttccttgccctggtattcattcataattatctgtaaactctttttaataaac |
237 |
Q |
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| T |
42327183 |
tttatactgattagtcataaaactaaaaaacacatatattcccatattttccttgccctggtattcattcataattatctctaaactctttttaataaac |
42327282 |
T |
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| Q |
238 |
atcaactttcacacaagaaattcaatttaaagtccccttaaaaagatgtgttttagttttttgtgtatttaaattagcgtgtatgcttttactgcatcgt |
337 |
Q |
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| T |
42327283 |
atcaactttcacacaagaaattcaatttaaagtccccttaaaaagatgtgttttagttttttgtgtatttaaattagcgtgtatgcttttactgcatcgt |
42327382 |
T |
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| Q |
338 |
gaaggcgtgaaactttgtttcatacccacaannnnnnnnagcatatctgtgatttgtcatgatggaaagggttcttggttcgttactgtggcagatatta |
437 |
Q |
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| T |
42327383 |
gaaggcgtgaaactttgtttcatacccacaattttttttagcatatctgtgattggtcatgatggaaagggttcttggttcgttactgtggcagatatta |
42327482 |
T |
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| Q |
438 |
aagggagttaaataattcacaggttcaatgggaagag |
474 |
Q |
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| T |
42327483 |
aagggagttaaataattcacaggttcaatgggaagag |
42327519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 13 - 157
Target Start/End: Complemental strand, 42323139 - 42323005
Alignment:
| Q |
13 |
agcacagacccgcaagaagaagagcgagccatggtgttgtgagatgtattctgcaccgtcttgttgtgattcaaagatgaagatgtgttgattatgaatg |
112 |
Q |
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| T |
42323139 |
agcacagacccgcaagaagaagagcgagccatggtgttgtgagatgtatactgcaccgtcttgttgtgattcaaagatgaagatgtgt----------tg |
42323050 |
T |
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| Q |
113 |
atgatgcgagtgttcctctgcgctttttatagtgtttagtcttaa |
157 |
Q |
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| T |
42323049 |
atgatgcgagtgttcctctgcgctttttatagtgtttagtcttaa |
42323005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 20 - 150
Target Start/End: Original strand, 42321527 - 42321647
Alignment:
| Q |
20 |
acccgcaagaagaagagcgagccatggtgttgtgagatgtattctgcaccgtcttgttgtgattcaaagatgaagatgtgttgattatgaatgatgatgc |
119 |
Q |
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| T |
42321527 |
acccgcaagaagaagagtgagccatggtgttgtgagatgtattcgtcaccgtc---ttgtgattcaaagatggagtagtattg-------acgatgatgc |
42321616 |
T |
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| Q |
120 |
gagtgttcctctgcgctttttatagtgttta |
150 |
Q |
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| T |
42321617 |
gagtgttactctgcgcattttatagtgttta |
42321647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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