View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3762_high_15 (Length: 476)
Name: NF3762_high_15
Description: NF3762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3762_high_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 18 - 472
Target Start/End: Original strand, 7036520 - 7036974
Alignment:
| Q |
18 |
ccaccagtccttcaaattgatctaaatgcaacaagatatctttttgaaataccgaggaaactcctagctaccaaaaccggacactnnnnnnnnnggacga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7036520 |
ccaccagtccttcaaattgatctaaatgcaacaagatatctttttgaaataccgaggaaactcctagctaccaaaaccggacactaaaaaaaaaggacga |
7036619 |
T |
|
| Q |
118 |
gaaaccgattctttaactccacaatctcctacacactgaagggatccttgacctacgactcctcttctaaataagttatctttggtagctattttattct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7036620 |
gaaaccgattctttaactccacaatctcctacacactgaagggatccttgacctacgactcctcttctaaataagttatctttggtagctattttattct |
7036719 |
T |
|
| Q |
218 |
gaaataatctccaagctaagcacgcaacttttaacgggattgatttatgccaagccttcgaccatgattgattaggaacacttatcaatccctccatcaa |
317 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7036720 |
gaaataatctccaagctaagcacacaacttttaacgggattgatttatgccaagccttcgaccatgattgattaggaacacttatcaatccctccatcaa |
7036819 |
T |
|
| Q |
318 |
cattttatacgtttcttttaccgaatacatatttcgtgtgtcctgaacgtgtatatatattgcatatatcgttccaccataccgaattgcctctccaacc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7036820 |
cattttatacgtttcttttaccgaatacatatttcgtgtgtcttgaacgtgtatatatattgcatatatcgttccaccataccgaattgcctctccaacc |
7036919 |
T |
|
| Q |
418 |
ctctctaaacaccccatctctttctcaccatatctatttgatagaaaactctacc |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
7036920 |
ctctctaaacaccccatctctttctcaccatatctatttgatagaacactgtacc |
7036974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 193 - 284
Target Start/End: Original strand, 18943225 - 18943316
Alignment:
| Q |
193 |
ttatctttggtagctattttattctgaaataatctccaagctaagcacgcaacttttaacgggattgatttatgccaagccttcgaccatga |
284 |
Q |
| |
|
|||||||| ||||||| | |||| ||||| | ||||||||| || |||| ||||||| |||| | || ||||||||||||| |||||||||| |
|
|
| T |
18943225 |
ttatcttttgtagctactctattttgaaacactctccaagcaaaacacgaaacttttgacggaactgctttatgccaagccctcgaccatga |
18943316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 282
Target Start/End: Complemental strand, 24828245 - 24828175
Alignment:
| Q |
212 |
tattctgaaataatctccaagctaagcacgcaacttttaacgggattgatttatgccaagccttcgaccat |
282 |
Q |
| |
|
|||| |||||||||||||| |||| || | |||||||||||||| |||||||||||||| || |||||| |
|
|
| T |
24828245 |
tattttgaaataatctccacactaaacatgaaacttttaacgggaccgatttatgccaagcttttgaccat |
24828175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 280
Target Start/End: Original strand, 27119057 - 27119125
Alignment:
| Q |
212 |
tattctgaaataatctccaagctaagcacgcaacttttaacgggattgatttatgccaagccttcgacc |
280 |
Q |
| |
|
|||| ||||||| | ||| | ||||||| | |||||||||||| | ||||||||| ||||||||||||| |
|
|
| T |
27119057 |
tattttgaaatagtttcctaactaagcatgaaacttttaacggcactgatttatgtcaagccttcgacc |
27119125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University