View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3762_high_19 (Length: 442)
Name: NF3762_high_19
Description: NF3762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3762_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Complemental strand, 1521617 - 1521189
Alignment:
| Q |
1 |
cttaaactcacagattttccatacccccctgaagttggtgaataggtattctaaactcccatattggatatttgtgtttcaaaaattgggatattcaatc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
1521617 |
cttaaactcacagattttccatacccccctgaagttggtgaataggtattctaaactcccagattggatatttttgtttcaaaaattgggatattcaatc |
1521518 |
T |
|
| Q |
101 |
aatcctttagcgagaatatatacaagctgtcctatttcgcacatatagagtacaaatcaagtaaccattctgcttctttatgaaatatctgtcaaccttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1521517 |
aatcctttagcgagaatatatacaagctgtcctatttcgcacatatagagtacaaatcaagtaaccattctgcttctttatgaaatatctgtcaaccttg |
1521418 |
T |
|
| Q |
201 |
acatgctaagttcaatcacgctgaattggattgtgtgctgagctgttttcttatttattttctcattagagcttcatagtccttcccattttatcttcaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1521417 |
acatgctaagttcaatcacgctgaattggattgtgtgctgagctgttttcttatttattttctcattagagcttcatagtccttcccattttatcttcaa |
1521318 |
T |
|
| Q |
301 |
atcttctaaaataatctcaagtcaaagtagttgcacaattcctataatcttaattaaacatcaactttttctttataaaagaaaatagttgcacaaaatc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1521317 |
atcttctaaaataatctcaagtcaaagtagttgcacaattcctataatcttaattaaacatcaactttttctttataaaagaaagtagttgcacaaaatc |
1521218 |
T |
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| Q |
401 |
attttgcgctcattatttaggttctgttc |
429 |
Q |
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| T |
1521217 |
attttgcgctcattatttaggttctgttc |
1521189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 4 - 329
Target Start/End: Complemental strand, 2913447 - 2913125
Alignment:
| Q |
4 |
aaactcacagattttccatacccccctgaagttggtgaataggtattctaaactcccatattggatatttgtgtttcaaaaattgggatattcaatcaat |
103 |
Q |
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||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
2913447 |
aaactcacagattttccatacccccctgagg---gtgaataggtattctaaactcccagattggatatttttgtttcaaaaattaggatattcaatcaat |
2913351 |
T |
|
| Q |
104 |
cctttagcgagaatatatacaagctgtcctatttcgcacatatagagtacaaatcaagtaaccattctgcttctttatgaaatatctgtcaaccttgaca |
203 |
Q |
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||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2913350 |
cctttcgtgagaatatatacaagctgtcctatttcgcacatatagagtacaaatcaagtaaccaatctgcttctttatgaaatatctgtcaaccttgaca |
2913251 |
T |
|
| Q |
204 |
tgctaagttcaatcacgctgaattggattgtgtgctgagctgttttcttatttattttctcattagagcttcatagtccttcccattttatcttcaaatc |
303 |
Q |
| |
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|||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||| |
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| T |
2913250 |
tgcttagttcaatcatgctgaattggattgtgtactgagctgttttcttatttattttcccagtagagcttcacagtccttcccattttatcttcaaatc |
2913151 |
T |
|
| Q |
304 |
ttctaaaataatctcaagtcaaagta |
329 |
Q |
| |
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|| ||||||||||||||||||||||| |
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|
| T |
2913150 |
ttttaaaataatctcaagtcaaagta |
2913125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 336 - 429
Target Start/End: Complemental strand, 2913091 - 2912998
Alignment:
| Q |
336 |
caattcctataatcttaattaaacatcaactttttctttataaaagaaaatagttgcacaaaatcattttgcgctcattatttaggttctgttc |
429 |
Q |
| |
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|||||| || |||||||||| |||||||| ||| ||||||||||||||| |||| ||| ||||||||||||| || ||||||||||||||||| |
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| T |
2913091 |
caattcttacaatcttaattcaacatcaattttgtctttataaaagaaagtagtggcatgaaatcattttgcgttctttatttaggttctgttc |
2912998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 332
Target Start/End: Complemental strand, 12171811 - 12171745
Alignment:
| Q |
267 |
tagagcttcatag-tccttcccattttatcttcaaatcttctaaaataatctcaagtcaaagtagtt |
332 |
Q |
| |
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|||| |||||||| ||| ||| |||||||||||||||||||||||||||| | || |||||||||| |
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| T |
12171811 |
tagaacttcataggtccatccaattttatcttcaaatcttctaaaataatttgcagccaaagtagtt |
12171745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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