View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3762_high_23 (Length: 428)
Name: NF3762_high_23
Description: NF3762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3762_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 17 - 424
Target Start/End: Original strand, 27027571 - 27027978
Alignment:
| Q |
17 |
aatcacaacatatatggatatcaatgacggcaaattttaacaagcgctaaaataatttcacatacatctgcttatctctcacagtagagccattcatttt |
116 |
Q |
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| T |
27027571 |
aatcacaacatatatggatatcaatgacggcaaattttaacaagcgctaaaataatttcacatacatctgcttatctctcacagtagagccattcatttt |
27027670 |
T |
|
| Q |
117 |
ctggatagccacatttgcagactcctctgaatcaaactggatataaccaaaccctttgctcttcccatcctcagacctggcaattttgctggacaaaatg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27027671 |
ctggatagccacatttgcagactcctctgaatcaaactggatataaccaaaccctttgctcttcccatcctcagacctggcaattttgctggacaaaatg |
27027770 |
T |
|
| Q |
217 |
ttcccatatttttgaaataaatcatgtagtcccacattatctatggatgctgctaagttctgtatattgacaccagaaagttttcattagaattcacttc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27027771 |
ttcccatatttttgaaataaatcatgtagtcccacattatctatggatgctgctaagttctgtatattgacaccagaaagttttcattagaattcacttc |
27027870 |
T |
|
| Q |
317 |
atacataaaaatgaatcggaatatcatcatttaagcatttcgcatcaaagcaagatagtgtaataatgtataacatataccttaacaaacacattccctt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27027871 |
atacataaaaatgaatcggaatatcatcatttaagcatttcgcatcaaagcaagatagtgtaataatgtataacatataccttaacaaacacattccctt |
27027970 |
T |
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| Q |
417 |
tgctactc |
424 |
Q |
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| T |
27027971 |
tgccactc |
27027978 |
T |
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