View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3762_high_27 (Length: 403)

Name: NF3762_high_27
Description: NF3762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3762_high_27
NF3762_high_27
[»] scaffold0542 (1 HSPs)
scaffold0542 (4-296)||(7092-7387)


Alignment Details
Target: scaffold0542 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: scaffold0542
Description:

Target: scaffold0542; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 4 - 296
Target Start/End: Complemental strand, 7387 - 7092
Alignment:
Q  4 atgtcgaagaatatagagaagattaattctgacccagaagtacttgtgattatggctggagaagataaacctacttacatagccaaaccaattattatca 103  Q
    ||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7387 atgtccaagaacatagagaagattaattctgagccagaagtacttgtgattatggctggagaagataaaccaacttacatagccaaaccaattattatca 7288  T
Q  104 ctacttctttaccttattgcacttgtggaggtgaatcaacttcaacaacatcttcatcaaccttaaccaatgaggaa---acattgactaattaagttgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  7287 ctacttctttaccttattgcacttgtggaggtgaatcaacttcaacaacatcttcatcaaccttaaccaatgaggaaattacattgactaattaagttgt 7188  T
Q  201 tgtaagcaacaaaattttgatttagtatagagagcgcttcctttatcatatattctagtggttttgtgagcacttgaatatgctcacttaagatga 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7187 tgtaagcaacaaaattttgatttagtatagagagcgcttcctttatcatatattctagtggttttgtgagcacttgaatatgatcacttaagatga 7092  T

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