View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3762_high_28 (Length: 391)
Name: NF3762_high_28
Description: NF3762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3762_high_28 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 14 - 376
Target Start/End: Original strand, 41031294 - 41031656
Alignment:
| Q |
14 |
ataatactggtgtgacattatttctctagcagttgcaaccatagaagtttctgctattttattacctgtatgatgtatcacatgttcaagttctatgaca |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
41031294 |
ataatactggtgtgacattatttctctagcagttgcaaccatagaagtttctgctattttattacctgtatgatgtatcacatgttctagttctatgaca |
41031393 |
T |
|
| Q |
114 |
agttttatcctgattttgtgtctcttttgttcattggtgacaaaagtggatttgaatgcattttgtatgactgattctagttaatagtgagttaaatgta |
213 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41031394 |
agttttatcctgattttgtgtctgttttgttcattggtgacaaaagtggatttgaatgcattttgtgtgactgattctagttaatagtgagttaaatgta |
41031493 |
T |
|
| Q |
214 |
agtgatttatgtttggatgcattaattcatctaaaaattggtcgaacaataaattcaaggctaaaaatcaattgttgtttacaccatttgtatcagtttt |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41031494 |
agtgatttatgtttggatgcattaattcatctaaaaattggtcaaacaataaatttaaggctaaaaatcaattgttgtttacaccatttgtatcagtttt |
41031593 |
T |
|
| Q |
314 |
accggagaacatccaaaggcttgaattaatttatcaccggacttgttgatgaatcatgttggt |
376 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41031594 |
accggagaacatccaaaggcttgaatgaatttatcaccagacttgttgatgaatcatgttggt |
41031656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 82 - 158
Target Start/End: Original strand, 41036882 - 41036958
Alignment:
| Q |
82 |
tatgatgtatcacatgttcaagttctatgacaagttttatcctgattttgtgtctcttttgttcattggtgacaaaa |
158 |
Q |
| |
|
|||||| ||||||||||||| |||| |||||||||||||| ||||||||||| | |||||||| | ||||||||| |
|
|
| T |
41036882 |
tatgatatatcacatgttcatgttccttgacaagttttatcatgattttgtgtgtattttgttcttccgtgacaaaa |
41036958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 231
Target Start/End: Complemental strand, 39981168 - 39981122
Alignment:
| Q |
185 |
tgattctagttaatagtgagttaaatgtaagtgatttatgtttggat |
231 |
Q |
| |
|
||||| ||||||| ||||||||||||| ||||| ||||||||||||| |
|
|
| T |
39981168 |
tgattttagttaaaagtgagttaaatggaagtggtttatgtttggat |
39981122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 286
Target Start/End: Complemental strand, 29923026 - 29922938
Alignment:
| Q |
199 |
agtgagttaaatgt-aagtgatttatgtttggatgcattaattcatctaaaaattggtcgaacaataaattcaaggctaaaaatcaatt |
286 |
Q |
| |
|
|||||||| ||||| |||| |||||||||||||| |||| |||||| |||||| || || ||||||||||| | |||||||||||| |
|
|
| T |
29923026 |
agtgagttgaatgtgaagtaatttatgtttggatacattcattcatgcaaaaatgagttaaaaaataaattcaaagataaaaatcaatt |
29922938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Complemental strand, 4411334 - 4411306
Alignment:
| Q |
260 |
caataaattcaaggctaaaaatcaattgt |
288 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
4411334 |
caataaattcaaggctaaaaatcaattgt |
4411306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University