View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3762_high_29 (Length: 385)
Name: NF3762_high_29
Description: NF3762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3762_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 16 - 370
Target Start/End: Complemental strand, 47948709 - 47948352
Alignment:
| Q |
16 |
caactatttgccattaagactagtggttcgcctagttataaaagaaatttgggattaaaaccttgcaa--ccaataaacaagtgaggaagcattccagaa |
113 |
Q |
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| T |
47948709 |
caactatttgccattaagactagtggttcgcctagttataaaagaaatttgggattaaaaccttgcaaaaccaataaacaagtgaggaagcattccagaa |
47948610 |
T |
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| Q |
114 |
agatatacaataaagtagaaatggacaagcatnnnnnnnnnnnnnnnn-cacatgcggttgacatatcatatccagcacacttttgagttcttagattag |
212 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47948609 |
agatatacaataaagtagaaatggacaagcataaaaaataaaataaaaacacatgcggttgacatatcatatccagcacacttttgagttcttagattag |
47948510 |
T |
|
| Q |
213 |
tattgccaaactccacatgatagaaaattataaacactgaccatagaatgataagacagttagccatagtaaatagtagccagacaacaaacgaggtgaa |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
47948509 |
tattgccaaactccacatgatagaaaattataaacactgaccatacaatgataagacaattagccatagtaaatagtagccagacaacaaacgaggtgaa |
47948410 |
T |
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| Q |
313 |
tatcattcctaaagatatcaagcttttaactagagctctaaatattcataaatctgtg |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47948409 |
tatcattcctaaagatatcaagcttttaactagagctctaaatattcataaatctgtg |
47948352 |
T |
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