View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3762_high_30 (Length: 358)

Name: NF3762_high_30
Description: NF3762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3762_high_30
NF3762_high_30
[»] chr7 (55 HSPs)
chr7 (15-325)||(43461477-43461786)
chr7 (36-308)||(43457539-43457816)
chr7 (84-325)||(7258339-7258574)
chr7 (64-230)||(48788479-48788646)
chr7 (64-230)||(35727847-35728017)
chr7 (77-230)||(42477529-42477686)
chr7 (64-325)||(10898877-10899132)
chr7 (58-236)||(12223485-12223659)
chr7 (138-236)||(32793334-32793432)
chr7 (60-309)||(45584297-45584538)
chr7 (85-230)||(44333286-44333435)
chr7 (60-325)||(30924817-30925067)
chr7 (79-229)||(7509271-7509426)
chr7 (80-231)||(44334278-44334425)
chr7 (60-231)||(48647243-48647418)
chr7 (77-230)||(48646198-48646355)
chr7 (133-221)||(2677094-2677182)
chr7 (129-229)||(5929982-5930082)
chr7 (130-237)||(33607368-33607475)
chr7 (82-233)||(34710213-34710360)
chr7 (81-231)||(39708277-39708423)
chr7 (145-236)||(8048653-8048744)
chr7 (131-222)||(24934954-24935045)
chr7 (36-111)||(44529560-44529635)
chr7 (77-184)||(12221496-12221607)
chr7 (156-229)||(8870149-8870222)
chr7 (77-230)||(35728911-35729060)
chr7 (138-233)||(44529172-44529270)
chr7 (129-230)||(7259558-7259658)
chr7 (122-230)||(48777406-48777514)
chr7 (129-221)||(24935566-24935657)
chr7 (58-222)||(34707777-34707938)
chr7 (77-236)||(6680338-6680493)
chr7 (42-107)||(44530427-44530492)
chr7 (251-325)||(44530595-44530670)
chr7 (248-325)||(25621702-25621780)
chr7 (247-301)||(33060899-33060953)
chr7 (130-228)||(46286674-46286772)
chr7 (156-229)||(8870907-8870980)
chr7 (129-230)||(10894492-10894592)
chr7 (58-179)||(45583794-45583911)
chr7 (269-325)||(48788674-48788731)
chr7 (156-228)||(24287651-24287723)
chr7 (247-325)||(13578301-13578379)
chr7 (247-302)||(19433914-19433969)
chr7 (129-227)||(384991-385088)
chr7 (247-305)||(6680513-6680571)
chr7 (247-309)||(12220104-12220165)
chr7 (247-301)||(44529117-44529171)
chr7 (269-325)||(8374978-8375035)
chr7 (151-228)||(24288741-24288818)
chr7 (78-111)||(32794613-32794646)
chr7 (277-325)||(46286567-46286616)
chr7 (269-325)||(48647445-48647502)
chr7 (269-325)||(42477445-42477501)
[»] chr2 (41 HSPs)
chr2 (45-325)||(17330004-17330289)
chr2 (44-341)||(7073686-7073990)
chr2 (64-230)||(39015154-39015324)
chr2 (77-230)||(40000152-40000309)
chr2 (130-232)||(43380734-43380836)
chr2 (60-230)||(32765086-32765260)
chr2 (77-230)||(24459271-24459428)
chr2 (75-325)||(31091342-31091586)
chr2 (60-230)||(24458209-24458383)
chr2 (129-236)||(7412255-7412362)
chr2 (60-230)||(14704154-14704320)
chr2 (60-230)||(2910249-2910423)
chr2 (64-230)||(2911291-2911461)
chr2 (133-227)||(31442503-31442597)
chr2 (138-236)||(33161931-33162029)
chr2 (60-230)||(39016192-39016357)
chr2 (130-325)||(17466683-17466887)
chr2 (116-222)||(5914872-5914978)
chr2 (132-213)||(21732281-21732362)
chr2 (130-230)||(43381045-43381145)
chr2 (60-219)||(31090317-31090480)
chr2 (132-212)||(21733627-21733707)
chr2 (116-227)||(31443085-31443196)
chr2 (175-228)||(12746100-12746153)
chr2 (147-228)||(34037544-34037625)
chr2 (138-222)||(12396162-12396246)
chr2 (271-311)||(33163462-33163502)
chr2 (181-236)||(17466204-17466259)
chr2 (77-111)||(33162037-33162071)
chr2 (77-111)||(38984810-38984844)
chr2 (269-303)||(39016385-39016419)
chr2 (58-108)||(39256812-39256862)
chr2 (269-325)||(24458124-24458181)
chr2 (247-312)||(31814324-31814389)
chr2 (281-325)||(34037687-34037732)
chr2 (260-305)||(38856360-38856405)
chr2 (129-204)||(39999125-39999197)
chr2 (156-228)||(14887378-14887450)
chr2 (200-236)||(31814268-31814304)
chr2 (248-308)||(33161849-33161909)
chr2 (156-228)||(37607273-37607345)
[»] chr4 (25 HSPs)
chr4 (58-236)||(20599692-20599866)
chr4 (37-233)||(4702976-4703174)
chr4 (130-308)||(19050320-19050505)
chr4 (64-227)||(4701935-4702102)
chr4 (64-230)||(54574574-54574744)
chr4 (64-230)||(47878288-47878458)
chr4 (129-325)||(42278113-42278299)
chr4 (133-222)||(26685321-26685410)
chr4 (247-325)||(39868986-39869063)
chr4 (253-310)||(26685408-26685465)
chr4 (64-153)||(42278807-42278900)
chr4 (129-225)||(42391759-42391855)
chr4 (58-133)||(6039367-6039446)
chr4 (253-303)||(48740006-48740056)
chr4 (156-228)||(21621994-21622066)
chr4 (156-228)||(32244445-32244517)
chr4 (247-325)||(4703197-4703276)
chr4 (247-325)||(50694813-50694892)
chr4 (132-236)||(56041127-56041227)
chr4 (170-228)||(32244582-32244640)
chr4 (129-209)||(26170830-26170913)
chr4 (160-228)||(21623001-21623069)
chr4 (191-227)||(25810348-25810384)
chr4 (166-230)||(50694898-50694962)
chr4 (253-309)||(53771035-53771091)
[»] scaffold0767 (2 HSPs)
scaffold0767 (58-236)||(6031-6210)
scaffold0767 (63-227)||(5769-5922)
[»] chr1 (35 HSPs)
chr1 (58-229)||(6612580-6612755)
chr1 (60-227)||(52439613-52439784)
chr1 (131-236)||(25038044-25038149)
chr1 (131-236)||(25043256-25043361)
chr1 (58-236)||(51450163-51450345)
chr1 (122-325)||(9340891-9341084)
chr1 (40-230)||(34085691-34085870)
chr1 (60-230)||(7944304-7944474)
chr1 (77-236)||(22857375-22857539)
chr1 (60-325)||(32665577-32665829)
chr1 (77-226)||(52440377-52440530)
chr1 (129-228)||(6613840-6613939)
chr1 (130-227)||(11830061-11830158)
chr1 (138-236)||(22856843-22856939)
chr1 (130-235)||(3117813-3117918)
chr1 (158-325)||(7945456-7945613)
chr1 (129-230)||(9339795-9339896)
chr1 (150-224)||(1001326-1001400)
chr1 (77-230)||(32664652-32664808)
chr1 (111-222)||(5782551-5782662)
chr1 (133-227)||(39977504-39977598)
chr1 (192-226)||(1001818-1001852)
chr1 (156-305)||(1407725-1407871)
chr1 (129-227)||(16249815-16249913)
chr1 (129-227)||(26518261-26518359)
chr1 (116-186)||(51453579-51453649)
chr1 (156-228)||(534428-534500)
chr1 (247-330)||(10333166-10333250)
chr1 (247-294)||(33342512-33342559)
chr1 (77-111)||(22856955-22856989)
chr1 (247-309)||(22857559-22857621)
chr1 (156-222)||(44719527-44719593)
chr1 (269-325)||(5782478-5782535)
chr1 (151-228)||(11059787-11059864)
chr1 (58-111)||(23703959-23704012)
[»] chr3 (37 HSPs)
chr3 (74-325)||(2591691-2591935)
chr3 (82-231)||(55389291-55389444)
chr3 (84-230)||(48809479-48809629)
chr3 (82-230)||(48573134-48573286)
chr3 (64-230)||(36280121-36280291)
chr3 (84-325)||(53958925-53959159)
chr3 (64-230)||(48574263-48574433)
chr3 (64-230)||(17700668-17700838)
chr3 (60-231)||(36279100-36279267)
chr3 (79-219)||(36827282-36827418)
chr3 (60-230)||(52318125-52318291)
chr3 (129-231)||(53957821-53957923)
chr3 (60-227)||(55388211-55388384)
chr3 (129-230)||(48808521-48808622)
chr3 (129-237)||(20464231-20464339)
chr3 (130-222)||(47428457-47428549)
chr3 (131-222)||(19114670-19114760)
chr3 (118-209)||(33837333-33837424)
chr3 (130-217)||(45599046-45599133)
chr3 (156-236)||(612377-612457)
chr3 (138-222)||(33427888-33427972)
chr3 (132-212)||(3693996-3694076)
chr3 (130-222)||(33428329-33428421)
chr3 (111-222)||(19115022-19115133)
chr3 (64-111)||(52317186-52317233)
chr3 (269-330)||(17701921-17701983)
chr3 (247-309)||(20464150-20464212)
chr3 (247-301)||(36827455-36827509)
chr3 (261-303)||(49261531-49261573)
chr3 (269-325)||(36279016-36279073)
chr3 (269-325)||(36280319-36280376)
chr3 (129-222)||(47117945-47118037)
chr3 (269-325)||(55388137-55388194)
chr3 (266-325)||(11773050-11773110)
chr3 (253-325)||(45600925-45600997)
chr3 (269-301)||(47075353-47075385)
chr3 (246-325)||(52318296-52318376)
[»] chr5 (42 HSPs)
chr5 (64-230)||(8075638-8075807)
chr5 (77-325)||(25590494-25590736)
chr5 (60-230)||(40612459-40612633)
chr5 (77-230)||(40611409-40611566)
chr5 (64-231)||(32640436-32640607)
chr5 (60-230)||(2464818-2464992)
chr5 (129-227)||(578625-578723)
chr5 (82-230)||(2466595-2466747)
chr5 (36-230)||(9537191-9537382)
chr5 (64-230)||(28590916-28591087)
chr5 (60-230)||(8074599-8074773)
chr5 (129-230)||(32641600-32641700)
chr5 (61-230)||(14889918-14890091)
chr5 (121-224)||(34173435-34173538)
chr5 (129-226)||(18004811-18004908)
chr5 (122-230)||(14891013-14891121)
chr5 (116-230)||(544797-544911)
chr5 (64-230)||(545848-546010)
chr5 (60-330)||(4592920-4593177)
chr5 (253-305)||(16611813-16611865)
chr5 (143-222)||(12445284-12445363)
chr5 (247-294)||(16979088-16979135)
chr5 (123-230)||(28589848-28589955)
chr5 (128-186)||(2314386-2314444)
chr5 (58-149)||(9537853-9537948)
chr5 (172-234)||(9537945-9538007)
chr5 (156-221)||(13651041-13651106)
chr5 (158-227)||(37072730-37072799)
chr5 (156-212)||(16611875-16611931)
chr5 (156-228)||(19183112-19183184)
chr5 (155-214)||(31946932-31946991)
chr5 (269-300)||(32640378-32640409)
chr5 (60-111)||(32641543-32641594)
chr5 (237-325)||(9537087-9537172)
chr5 (138-236)||(18400341-18400439)
chr5 (130-228)||(21069460-21069557)
chr5 (269-330)||(32641728-32641790)
chr5 (269-310)||(546038-546079)
chr5 (191-228)||(32555461-32555498)
chr5 (269-301)||(14891149-14891181)
chr5 (269-309)||(18004719-18004759)
chr5 (77-109)||(27720733-27720765)
[»] chr8 (30 HSPs)
chr8 (78-236)||(5737831-5737983)
chr8 (60-325)||(32898245-32898504)
chr8 (58-236)||(5737005-5737187)
chr8 (77-236)||(28619349-28619512)
chr8 (60-323)||(1952778-1953027)
chr8 (138-227)||(8569560-8569649)
chr8 (64-230)||(35178609-35178779)
chr8 (36-325)||(5965198-5965501)
chr8 (60-230)||(10407384-10407558)
chr8 (77-325)||(35177459-35177700)
chr8 (130-231)||(41122616-41122717)
chr8 (116-236)||(32564349-32564469)
chr8 (64-230)||(10406355-10406510)
chr8 (129-228)||(39138517-39138616)
chr8 (138-236)||(41121268-41121366)
chr8 (247-325)||(45476226-45476305)
chr8 (171-228)||(12637656-12637713)
chr8 (247-330)||(5738003-5738087)
chr8 (156-228)||(9626341-9626413)
chr8 (58-109)||(32564279-32564330)
chr8 (77-108)||(41121377-41121408)
chr8 (129-228)||(45476416-45476515)
chr8 (58-108)||(32563848-32563898)
chr8 (156-228)||(24199101-24199174)
chr8 (269-310)||(28619547-28619588)
chr8 (247-303)||(28524845-28524901)
chr8 (156-228)||(28524929-28525001)
chr8 (156-228)||(41754139-41754211)
chr8 (149-225)||(45476336-45476412)
chr8 (269-309)||(45476565-45476605)
[»] scaffold0039 (1 HSPs)
scaffold0039 (116-236)||(79236-79356)
[»] chr6 (6 HSPs)
chr6 (82-236)||(31239789-31239947)
chr6 (156-228)||(30748161-30748233)
chr6 (174-227)||(24621249-24621302)
chr6 (175-227)||(5265370-5265422)
chr6 (129-221)||(19600098-19600189)
chr6 (269-301)||(31219162-31219194)
[»] scaffold0016 (1 HSPs)
scaffold0016 (131-204)||(36400-36473)
[»] scaffold0369 (1 HSPs)
scaffold0369 (130-227)||(8672-8768)


Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 55)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 15 - 325
Target Start/End: Original strand, 43461477 - 43461786
Alignment:
Q  15 gtggtgtaatagttgacgaaagcacagtcaaggatttaaaatgaagttggtgtttaagtgatgattgattttgaacaaaagagagaattagatgacaggg 114  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||  ||||||||||||||||| ||| |||||||||||||||||||    
T  43461477 gtggtgtaatagttgacgaaagaacagtaaaggatttaaaatgaagttggtgtttaatggatgattgattttgaacgaaa-agagaattagatgacaggg 43461575  T
Q  115 gtttgagatttagtgatttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtcca 214  Q
    |||||||||||||||||||||| ||||||||||||||| | ||||||||| ||||||||||||||||||||| | ||||||||||||||| |||||| ||    
T  43461576 gtttgagatttagtgatttagggatttgagattcaattgagggatattgatttttggttcagggatcaaagtgaccattttttactttcactttagttca 43461675  T
Q  215 tgtgacacctcatatgtcatgttgtgccacatcatcatcacttagcagaataacttaacgtcagagactaaagtgataacagaagtgcatagtcaaaact 314  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  43461676 tgtgacacctcatatgccatgttgtgccacatcatcatcacttagtagaataacttaacgtcagagactaaagtgataacggaagtgcatagtcaaaact 43461775  T
Q  315 tatttgtattt 325  Q
    |||||||||||    
T  43461776 tatttgtattt 43461786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 36 - 308
Target Start/End: Complemental strand, 43457816 - 43457539
Alignment:
Q  36 gcacagtcaaggatttaaaatgaagttggtgtttaagtgatgattgattttgaacaaaaga--gagaattagatga----caggggtttgagatttagtg 129  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||  |||||||||||||     ||||||||||||||| |||    
T  43457816 gcacagtcaaggacttaaaataaagttggtgtttaattgatgattgattttgaacaaaagagagagaattagatgatatttaggggtttgagatttggtg 43457717  T
Q  130 atttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatat 229  Q
    ||||| | ||||||||||||||||| ||||||||| |||||| ||||||| |||||| | ||||||||||||||| |||||||  |||||||||||||||    
T  43457716 atttaaggatttgagattcaatttagggatattgatttttgg-tcagggaccaaagtgaccattttttactttcactttagtctctgtgacacctcatat 43457618  T
Q  230 gtcatgt---tgtgccacatcatcatcacttagcagaataacttaacgtcagagactaaagtgataacagaagtgcatagtc 308  Q
    | |||||   |||| ||   |||||||||||| ||||||||||||||||||   |||||||||||||| |||||||| ||||    
T  43457617 gccatgtaactgtgtca---catcatcacttaacagaataacttaacgtcatgaactaaagtgataacggaagtgcagagtc 43457539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 84 - 325
Target Start/End: Complemental strand, 7258574 - 7258339
Alignment:
Q  84 tttgaacaaaagagagaattagatgaca----ggggtttgagatttagtgatttaggaatttgagattcaatttatggatattgagttttggttcaggga 179  Q
    ||||||||||||||||||||||||||||    ||| |||||||||||  ||||||||||||||| |||||||||  | ||||||| ||||||||||||||    
T  7258574 tttgaacaaaagagagaattagatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgggaatattgatttttggttcaggga 7258475  T
Q  180 tcaaagtaatcattttttactttcattttagtccatgtgacacctcatatgtcatgttgtgccacatcatcatcacttagcagaataacttaacgtcaga 279  Q
     |||||| | |||||| |||||||| ||| |||| ||||||||||||||||           | |  |||||||||||| |||| |   ||||||||||     
T  7258474 ccaaagtgaccattttctactttcactttggtccctgtgacacctcatatg-----------cgctacatcatcacttaacagatttttttaacgtcagg 7258386  T
Q  280 gactaaagtgataacagaagtgcatagtca-aaacttatttgtattt 325  Q
    |||||||||||||||||||||||| ||||| | ||||||||||||||    
T  7258385 gactaaagtgataacagaagtgcagagtcagagacttatttgtattt 7258339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 64 - 230
Target Start/End: Original strand, 48788479 - 48788646
Alignment:
Q  64 gtgtttaagtgatgattgattttgaacaaaagagagaattagatgacagggg-tttgagatttagtgatttaggaatttgagattcaatttatggatatt 162  Q
    ||||||||  || |||| ||||||||||||||||||||||| |||||| ||| |||||||||||   |||||||||||||| ||||||||| || |||||    
T  48788479 gtgtttaatggaagattaattttgaacaaaagagagaattaaatgacaagggatttgagatttaagaatttaggaatttgatattcaatttgtgaatatt 48788578  T
Q  163 gagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatg 230  Q
    || |||||||||||||| |||||| | |||||| |||||||| ||| |||| ||||||||||||||||    
T  48788579 gatttttggttcagggaccaaagtgaccattttctactttcactttggtccttgtgacacctcatatg 48788646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 64 - 230
Target Start/End: Complemental strand, 35728017 - 35727847
Alignment:
Q  64 gtgtttaagtgatgattgattttgaacaaaagagagaattagatgaca----ggggtttgagatttagtgatttaggaatttgagattcaatttatggat 159  Q
    ||||||||  || |||| ||||||||||||||||||||||||||||||    ||| ||||||||||||  |||||| ||||||| |||||||||  | ||    
T  35728017 gtgtttaatggaagattaattttgaacaaaagagagaattagatgacatttagggatttgagatttaggaatttagaaatttgatattcaatttgggaat 35727918  T
Q  160 attgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatg 230  Q
    ||||| |||||||| | |||||||||| | |||||| |||| ||| ||| |||| ||||||||||||||||    
T  35727917 attgatttttggttaaaggatcaaagtgaccattttctactatcactttggtccctgtgacacctcatatg 35727847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 77 - 230
Target Start/End: Complemental strand, 42477686 - 42477529
Alignment:
Q  77 gattgattttgaacaaaagagagaattagatgaca----ggggtttgagatttagtgatttaggaatttgagattcaatttatggatattgagttttggt 172  Q
    |||| ||||||||||||||||||||||||||||||    ||| |||||||||||   |||||||||||||| ||||||| |  | |||||   |||||||    
T  42477686 gattaattttgaacaaaagagagaattagatgacatttagggatttgagatttaagtatttaggaatttgatattcaatatgggaatattagtttttggt 42477587  T
Q  173 tcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatg 230  Q
    ||||||| |||||| |||||||| |||||||| ||| |||| ||||||||||||||||    
T  42477586 tcagggaccaaagtgatcattttctactttcactttggtccctgtgacacctcatatg 42477529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 64 - 325
Target Start/End: Original strand, 10898877 - 10899132
Alignment:
Q  64 gtgtttaagtgatgattgattttgaacaaaagagagaattagatgaca----ggggtttgagatttagtgatttaggaatttgagattcaatttatggat 159  Q
    ||||||||  || |||| |||||||||||| |||||||||||||||||    ||| |||||||| ||   |||||||||||||| |||||||||  | ||    
T  10898877 gtgtttaatggaagattaattttgaacaaatgagagaattagatgacatttagggatttgagatgtaagaatttaggaatttgatattcaatttgggaat 10898976  T
Q  160 attgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatgtcatgttgtgccacatcatcatcacttag 259  Q
    ||||| |||||||||| ||| |||||| | |||||| |||||||  ||| |||| ||||||||||||||        || ||||   ||||||||||||     
T  10898977 attgatttttggttcaaggaccaaagtgaccattttctactttctctttggtccctgtgacacctcata--------tgcgcca---catcatcacttaa 10899065  T
Q  260 cagaataacttaacgtcagagactaaagtgataacagaagtgcatagtca-aaacttatttgtattt 325  Q
    |||| |   |||||||||| ||||||||||||||| |||||||| ||||| | ||||||||||||||    
T  10899066 cagatttttttaacgtcagggactaaagtgataacggaagtgcagagtcagagacttatttgtattt 10899132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 58 - 236
Target Start/End: Original strand, 12223485 - 12223659
Alignment:
Q  58 aagttggtgtttaagtgatgattgattttgaacaaaagagagaattagatgacaggggtttgagatttagtgatttaggaatttgagattcaatttatgg 157  Q
    ||||||||||||||  || |||||||||||||| ||||||  ||||||||||||    |||  |  || |  ||||||| ||||||||||||||||  ||    
T  12223485 aagttggtgtttaatggaagattgattttgaactaaagaggtaattagatgaca----tttatggatttgaaatttagggatttgagattcaatttgggg 12223580  T
Q  158 atattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatgtcatgt 236  Q
    ||||||| |||||||||| |||||||||| |  |||||||||||||| |||||| | ||||||| ||||||||||||||    
T  12223581 atattgatttttggttcaaggatcaaagtgacaattttttactttcactttagttcctgtgacaactcatatgtcatgt 12223659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 138 - 236
Target Start/End: Complemental strand, 32793432 - 32793334
Alignment:
Q  138 atttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatgtcatgt 236  Q
    |||||||||||| |||| ||||||| | ||||| |||||||| |||| | ||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  32793432 atttgagattcattttagggatattcatttttgattcagggaccaaaatgatcattttttactttcactttagtccatgtgacacctcacatgtcatgt 32793334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 60 - 309
Target Start/End: Original strand, 45584297 - 45584538
Alignment:
Q  60 gttggtgtttaagtgatgattgattttgaacaaaagagagaattagatgaca----ggggtttgagatttagtgatttaggaatttgagattcaatttat 155  Q
    |||| |||||||  || |||||||||||| ||||| ||| ||||||||||||    ||| |||||||||||  ||||||||||||||| |||||||||      
T  45584297 gttgatgtttaatggaagattgattttgatcaaaaaagataattagatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgg 45584396  T
Q  156 ggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatgtcatgttgtgccacatcatcatcac 255  Q
    | ||||||| |||||||||||||| |||||| | |||||| ||| |||| ||| |||| | ||||||||||||||         ||||||||   |||||    
T  45584397 gaatattga-ttttggttcagggaccaaagtgaccattttctacattcactttggtccttatgacacctcatatgc--------gccacatc---atcac 45584484  T
Q  256 ttagcagaataacttaacgtcagagactaaagtgataacagaagtgcatagtca 309  Q
    ||| |||| |   |||||||||| ||||||||||||||| |||||||| |||||    
T  45584485 ttaacagatttttttaacgtcagggactaaagtgataacggaagtgcagagtca 45584538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 85 - 230
Target Start/End: Complemental strand, 44333435 - 44333286
Alignment:
Q  85 ttgaacaaaagagagaattagatga----caggggtttgagatttagtgatttaggaatttgagattcaatttatggatattgagttttggttcagggat 180  Q
    ||||||||| ||||||||||| |||     |||| |||||||||||  ||||||||||||||| |||||||||  | ||||||| ||||||||||||||     
T  44333435 ttgaacaaatgagagaattagttgaaatttagggatttgagatttaaggatttaggaatttgatattcaatttgggaatattgatttttggttcagggac 44333336  T
Q  181 caaagtaatcattttttactttcattttagtccatgtgacacctcatatg 230  Q
    |||||| | |||||| ||||||||  || |||| ||||||||||||||||    
T  44333335 caaagtgaccattttctactttcacgttggtccctgtgacacctcatatg 44333286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 60 - 325
Target Start/End: Original strand, 30924817 - 30925067
Alignment:
Q  60 gttggtgtttaagtgatgattgattttgaacaaaagagagaattagatgacaggggtttgag-atttagtgatttaggaatttgagattcaatttatgga 158  Q
    ||||||||||||  || |||||||||||||||||| ||| ||||||||||||    ||| || |||||  |||||||| |||||| |||||||||  |||    
T  30924817 gttggtgtttaatggaagattgattttgaacaaaaaagataattagatgaca----tttaaggatttaa-gatttagggatttgatattcaatttgggga 30924911  T
Q  159 tattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatgtcatgttgtgccacatcatcatcactta 258  Q
    |||||| ||||||||||  ||||||||| | |||||| |||||||| |||  ||  ||||||||||||||        || ||||   ||||||||||||    
T  30924912 tattgatttttggttcatagatcaaagtgaccattttctactttcactttgatcactgtgacacctcata--------tgcgcca---catcatcactta 30925000  T
Q  259 gcagaataacttaacgtcagagactaaagtgataacagaagtgcatagtca-aaacttatttgtattt 325  Q
     ||| ||   |||||||||||||||||||| ||||| |||||||||||||| | ||||||||||||||    
T  30925001 acag-attttttaacgtcagagactaaagtaataacggaagtgcatagtcagagacttatttgtattt 30925067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 79 - 229
Target Start/End: Original strand, 7509271 - 7509426
Alignment:
Q  79 ttgattttgaacaaaagagagaattagatga----caggggtttgagatttagtgatttaggaatttgagattcaatttatggatattgagttttggttc 174  Q
    |||||||||||||| |||| |||||| ||||     |||| |||||||||||| | |||||| ||||||||||||||||  ||||||||| ||||||||     
T  7509271 ttgattttgaacaagagagtgaattaaatgatatttagggatttgagatttaggggtttagggatttgagattcaatttggggatattgatttttggttt 7509370  T
Q  175 agggatcaaagtaatcattttt-tactttcattttagtccatgtgacacctcatat 229  Q
    ||||| |||||| |  |||||| |||||||| |||||||||| |||||| ||||||    
T  7509371 agggaccaaagtgactatttttctactttcactttagtccatatgacacatcatat 7509426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 80 - 231
Target Start/End: Original strand, 44334278 - 44334425
Alignment:
Q  80 tgattttgaacaaaagagagaattagatgacaggggtttgagatttagtgatttaggaatttgagattcaatttatggatattgagttttggttcaggga 179  Q
    ||||||||||||||||||| ||||||||||||    ||| ||| ||   |||||||| |||||| |||||||||  ||||||||| |||||||||| |||    
T  44334278 tgattttgaacaaaagagataattagatgaca----tttaagaatttaagatttagggatttgatattcaatttggggatattgatttttggttcatgga 44334373  T
Q  180 tcaaagtaatcattttttactttcattttagtccatgtgacacctcatatgt 231  Q
     |||||| |  ||||| |||||||| ||| |||||||||||| |||||||||    
T  44334374 ccaaagtgactattttctactttcactttggtccatgtgacatctcatatgt 44334425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 231
Target Start/End: Original strand, 48647243 - 48647418
Alignment:
Q  60 gttggtgtttaagtgatgattgattttgaacaaaagagagaattagatgacag----gggtttgagatttagtgatttaggaatttgagattcaatttat 155  Q
    ||||||||||||  || |||||||||||||||||| ||| |||||||||| |     || ||| |||||||| ||| |||| |||||  |||||||||      
T  48647243 gttggtgtttaatggaagattgattttgaacaaaatagataattagatgatatttaaggatttaagatttagggatatagggatttggtattcaatttgg 48647342  T
Q  156 ggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatgt 231  Q
    | ||||||| ||||||||||||||  ||||| | |||||| |||||||| ||| |||| |||||||||||||||||    
T  48647343 gcatattgatttttggttcagggacgaaagtgaccattttctactttcactttggtccttgtgacacctcatatgt 48647418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 77 - 230
Target Start/End: Complemental strand, 48646355 - 48646198
Alignment:
Q  77 gattgattttgaacaaaagagagaatta-gatgaca----ggggtttgagatttagtgatttaggaatttgagattcaatttatggatattgagttttgg 171  Q
    |||| ||||||||||||| ||||||||| |||||||    ||| |||||||||||| ||||||||||||||| ||||||||||   ||||| | ||||||    
T  48646355 gattaattttgaacaaaaaagagaattaagatgacatttagggatttgagatttagggatttaggaatttgatattcaatttagaaatattaatttttgg 48646256  T
Q  172 ttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatg 230  Q
    |||| ||| |||||| | ||||||||||||||| ||| |||  |||||||||| |||||    
T  48646255 ttcaagga-caaagtgaccattttttactttcactttggtctctgtgacaccttatatg 48646198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 221
Target Start/End: Complemental strand, 2677182 - 2677094
Alignment:
Q  133 taggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgaca 221  Q
    |||| |||||||||| |||||| ||||||||| |||| ||||||||| |||||| |||||||| |||||||| ||||||||||||||||    
T  2677182 tagggatttgagatttaatttagggatattgatttttagttcagggaacaaagtgatcattttctactttcactttagtccatgtgaca 2677094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 229
Target Start/End: Original strand, 5929982 - 5930082
Alignment:
Q  129 gatttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcata 228  Q
    |||||||  ||||||||||||||||  | ||||||| ||||| | ||||||||||||| ||||||||| ||||||| ||||||| |||||||||||||||    
T  5929982 gatttagagatttgagattcaatttgggaatattgatttttgatccagggatcaaagtgatcatttttaactttcactttagtctatgtgacacctcata 5930081  T
Q  229 t 229  Q
    |    
T  5930082 t 5930082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 130 - 237
Target Start/End: Original strand, 33607368 - 33607475
Alignment:
Q  130 atttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatat 229  Q
    ||||||| |||| |||||||||||  ||||||||| ||||||| || ||| |||||| | || |||||||||||| |||||||||| |||||||||||||    
T  33607368 atttagggatttaagattcaatttggggatattgatttttggtccaaggaccaaagtgaccaatttttactttcactttagtccatttgacacctcatat 33607467  T
Q  230 gtcatgtt 237  Q
    | ||||||    
T  33607468 gccatgtt 33607475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 82 - 233
Target Start/End: Original strand, 34710213 - 34710360
Alignment:
Q  82 attttgaacaaaagagagaattagatgacaggggtttgagatttagtgatttaggaatttgagattcaatttatggatattgagttttggttcagggatc 181  Q
    ||||||||||||||||||||||||||||||    ||| ||  || |  |||||||| ||| | |||||||||  |||| |||| ||||| ||||||||||    
T  34710213 attttgaacaaaagagagaattagatgaca----tttaaggatttgaaatttaggattttaaaattcaatttgaggatgttgatttttgattcagggatc 34710308  T
Q  182 aaagtaatcattttttactttcattttagtccatgtgacacctcatatgtca 233  Q
    |||||||  |||||||||||||| |||||||  |||||||| ||| ||||||    
T  34710309 aaagtaacaattttttactttcactttagtctctgtgacacatcaaatgtca 34710360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 81 - 231
Target Start/End: Complemental strand, 39708423 - 39708277
Alignment:
Q  81 gattttgaacaaaagagagaattagatgacaggggtttgagatttagtgatttaggaatttgagattcaatttatggatattgagttttggttcagggat 180  Q
    |||||||||||||||||||||||||||||||    ||| ||| ||   |||||||| |||||| |||||||||  | ||||||| |||||||| ||||      
T  39708423 gattttgaacaaaagagagaattagatgaca----tttaagaatttaagatttagggatttgaaattcaatttgagaatattgatttttggtttagggtc 39708328  T
Q  181 caaagtaatcattttttactttcattttagtccatgtgacacctcatatgt 231  Q
    |||||| | |||||| |||||||| |  |||||||||||||| ||||||||    
T  39708327 caaagtgaccattttctactttcactacagtccatgtgacacatcatatgt 39708277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 236
Target Start/End: Original strand, 8048653 - 8048744
Alignment:
Q  145 attcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatgtcatgt 236  Q
    ||||||||| |||||||| | ||| |||||||||| |||||| | |||||| |||||||| ||||||||||||||||| |||||||| ||||    
T  8048653 attcaatttgtggatattaattttcggttcagggaccaaagtgaccattttctactttcactttagtccatgtgacacatcatatgttatgt 8048744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 222
Target Start/End: Complemental strand, 24935045 - 24934954
Alignment:
Q  131 tttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacac 222  Q
    |||||| ||||||||||||||||| | ||||||| ||| |||| |||||||||||| | |||||| |||||||| |||||| ||||||||||    
T  24935045 tttagggatttgagattcaatttaggaatattgattttcggtttagggatcaaagtgaccattttctactttcactttagttcatgtgacac 24934954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 44529635 - 44529560
Alignment:
Q  36 gcacagtcaaggatttaaaatgaagttggtgtttaagtgatgattgattttgaacaaaagagagaattagatgaca 111  Q
    ||||||||| ||| |||||||||||||| | |||||  ||||||||||||||||||||||||| ||||||||||||    
T  44529635 gcacagtcagggacttaaaatgaagttgatttttaatggatgattgattttgaacaaaagagataattagatgaca 44529560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 77 - 184
Target Start/End: Complemental strand, 12221607 - 12221496
Alignment:
Q  77 gattgattttgaacaaaagagagaattagatgaca----ggggtttgagatttagtgatttaggaatttgagattcaatttatggatattgagttttggt 172  Q
    |||| ||||||||||||||||||||||||||||||    | |  ||||||||||| ||||||| ||||||| |||||||||  |||||||||  ||||||    
T  12221607 gattaattttgaacaaaagagagaattagatgacatttagagaattgagatttagggatttagaaatttgatattcaatttggggatattgatctttggt 12221508  T
Q  173 tcagggatcaaa 184  Q
    ||||||| ||||    
T  12221507 tcagggaccaaa 12221496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 8870222 - 8870149
Alignment:
Q  156 ggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatat 229  Q
    |||||| || |||| ||||||||| ||||||||||||||| ||||||||||||||||  |||||||||||||||    
T  8870222 ggatatcgatttttagttcagggaccaaagtaatcattttctactttcattttagtctttgtgacacctcatat 8870149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 77 - 230
Target Start/End: Original strand, 35728911 - 35729060
Alignment:
Q  77 gattgattttgaacaaaagagagaattagatgacaggggtttgag-atttagtgatttaggaatttgagattcaatttatggatattgagttttggttca 175  Q
    |||||||||||||||||||||| ||||||||||||    ||| || |||||  |||||||| |||| | |||||||||  | ||||||| ||||||||||    
T  35728911 gattgattttgaacaaaagagataattagatgaca----tttaaggatttaa-gatttagggatttaatattcaatttgggaatattgatttttggttca 35729005  T
Q  176 gggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatg 230  Q
    |||| |||||| | || ||| |||||||| ||| |||||| | ||||||||||||    
T  35729006 gggaccaaagtgaccactttctactttcactttggtccatataacacctcatatg 35729060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 233
Target Start/End: Complemental strand, 44529270 - 44529172
Alignment:
Q  138 atttgagattcaatttatggatattgagtttt----ggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatgtca 233  Q
    ||||||||||||||||  ||||||||| ||||    ||||||||| ||||||| | ||||||| ||||||| |||||||| |||||||||||||||||||    
T  44529270 atttgagattcaatttgaggatattgatttttaattggttcaggggtcaaagtgaccattttt-actttcactttagtccttgtgacacctcatatgtca 44529172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 129 - 230
Target Start/End: Original strand, 7259558 - 7259658
Alignment:
Q  129 gatttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcata 228  Q
    |||||||| |||||| |||||||||  ||||||| | |||||||||||||| |||||| | |||||| || ||||| ||| |||| ||||||||||||||    
T  7259558 gatttagggatttgatattcaatttggggatattaatttttggttcagggaccaaagtgaccattttcta-tttcactttggtccttgtgacacctcata 7259656  T
Q  229 tg 230  Q
    ||    
T  7259657 tg 7259658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 122 - 230
Target Start/End: Complemental strand, 48777514 - 48777406
Alignment:
Q  122 atttagtgatttaggaatttgagattcaatttatgg-atattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgac 220  Q
    |||||| |||||||| |||||| |||||||||  || ||||||| |||||||||||| |||||||| | |||||| || ||||| ||| |||| ||||||    
T  48777514 atttagggatttagggatttgaaattcaattttggggatattga-ttttggttcaggaatcaaagtgaccattttctattttcactttggtccctgtgac 48777416  T
Q  221 acctcatatg 230  Q
    ||||||||||    
T  48777415 acctcatatg 48777406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 221
Target Start/End: Original strand, 24935566 - 24935657
Alignment:
Q  129 gatttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgaca 221  Q
    |||||||||||||||||||||||||   ||||| || |||| |||||||||||||||| |   ||||||||||||| |||||||| |||||||    
T  24935566 gatttaggaatttgagattcaatttggtgatat-gatttttagttcagggatcaaagtgacatttttttactttcactttagtccttgtgaca 24935657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 222
Target Start/End: Complemental strand, 34707938 - 34707777
Alignment:
Q  58 aagttggtgtttaagtg-atgattgattttgaacaaaagagagaattagatgacaggggtttgagatttagtgatttaggaatttgagattcaatttatg 156  Q
    |||||||||||||| || |  ||||||||||||||||||||||||||| ||||||    ||| ||| || | |||||||| |||||| |||||| ||  |    
T  34707938 aagttggtgtttaaatggaaaattgattttgaacaaaagagagaattatatgaca----tttaagaatttgagatttagggatttgaaattcaacttggg 34707843  T
Q  157 gatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacac 222  Q
    |||||| | ||||||| || ||| ||||||  ||||||| || ||||| |||| ||| ||||||||    
T  34707842 gatattaatttttggtccatggaacaaagtgttcattttctattttcactttattccctgtgacac 34707777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 236
Target Start/End: Original strand, 6680338 - 6680493
Alignment:
Q  77 gattgattttgaacaaaagagagaattagatgacaggggtttgagatttagtgatttaggaatttgagattcaatttatggatattgagttttggttcag 176  Q
    ||||||||||||||||||||||||||||||||| |    || | ||||| | |||||| |||||| | |||||||||  ||||||||| |||||||| ||    
T  6680338 gattgattttgaacaaaagagagaattagatgata---tttagggattt-gagatttatgaatttaaaattcaatttggggatattgatttttggtttag 6680433  T
Q  177 ggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatgtcatgt 236  Q
    |||  ||| | |  ||||| |||||||| |||||||| | |||||| |||  ||||||||    
T  6680434 ggactaaaatgactattttctactttcactttagtccctttgacacatcaattgtcatgt 6680493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 44530427 - 44530492
Alignment:
Q  42 tcaaggatttaaaatgaagttggtgtttaagtgatgattgattttgaacaaaagagagaattagat 107  Q
    |||| ||| ||||||||||||||| |||||   |||||||||||||||| ||||||||||||||||    
T  44530427 tcaaagatctaaaatgaagttggtttttaatgaatgattgattttgaacgaaagagagaattagat 44530492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 325
Target Start/End: Original strand, 44530595 - 44530670
Alignment:
Q  251 atcacttagcagaataacttaacgtcagagactaaagtgataacagaagtgcatagtca-aaacttatttgtattt 325  Q
    |||||||| ||||||||||||||| ||  ||||||||||||||| |||||||| ||||| | |||||||| |||||    
T  44530595 atcacttaacagaataacttaacgccaatgactaaagtgataacggaagtgcagagtcagagacttatttatattt 44530670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 325
Target Start/End: Original strand, 25621702 - 25621780
Alignment:
Q  248 atcatcacttagcagaataacttaacgtcagagactaaagtgataacagaagtgcatagtc-aaaacttatttgtattt 325  Q
    ||||||| ||| || ||| | |||||||||| |||||||||||||||||||||||| | || |||||| ||||||||||    
T  25621702 atcatcagttaacaaaattatttaacgtcagtgactaaagtgataacagaagtgcacattcaaaaactaatttgtattt 25621780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 301
Target Start/End: Complemental strand, 33060953 - 33060899
Alignment:
Q  247 catcatcacttagcagaataacttaacgtcagagactaaagtgataacagaagtg 301  Q
    |||||||| ||| |||||| | |||||||||||||||||||||||||| ||||||    
T  33060953 catcatcatttaacagaattatttaacgtcagagactaaagtgataacggaagtg 33060899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 228
Target Start/End: Complemental strand, 46286772 - 46286674
Alignment:
Q  130 atttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcata 228  Q
    ||||||| |||||| ||| |||||  | ||||||| |||||||||| |||||||||| |  ||||| |||||||||||| ||| |||| |||| |||||    
T  46286772 atttagggatttgaaatttaatttgggaatattgatttttggttcaaggatcaaagtgactattttctactttcattttggtcaatgtaacacatcata 46286674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 229
Target Start/End: Original strand, 8870907 - 8870980
Alignment:
Q  156 ggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatat 229  Q
    |||||| || |||| ||||||||| |||||||| |||||| |||||||||||||||   ||||||||| |||||    
T  8870907 ggatatcgatttttagttcagggaccaaagtaaccattttctactttcattttagtttttgtgacaccacatat 8870980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 129 - 230
Target Start/End: Complemental strand, 10894592 - 10894492
Alignment:
Q  129 gatttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcata 228  Q
    |||||||| |||||| |||||||||  |||||| || ||||||| ||||||  ||||| | |||||| |||||||| ||| || ||||||||||||| ||    
T  10894592 gatttagggatttgatattcaatttggggatat-gatttttggtccagggactaaagtgaccattttctactttcactttggtgcatgtgacacctcgta 10894494  T
Q  229 tg 230  Q
    ||    
T  10894493 tg 10894492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 179
Target Start/End: Complemental strand, 45583911 - 45583794
Alignment:
Q  58 aagttggtgtttaagtgatgattgattttgaacaaaagagagaattagatgacaggggtttgag-atttagtgatttaggaatttgagattcaatttatg 156  Q
    ||||||||||||||  || |||||||||||| ||||| ||| ||||||||||||    ||  || |||||  |||||||| |||||| |||||||||  |    
T  45583911 aagttggtgtttaatggaagattgattttgatcaaaaaagataattagatgaca----ttaaaggatttaa-gatttagggatttgatattcaatttggg 45583817  T
Q  157 gatattgagttttggttcaggga 179  Q
    |||||||| ||||||||||||||    
T  45583816 gatattgatttttggttcaggga 45583794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 325
Target Start/End: Original strand, 48788674 - 48788731
Alignment:
Q  269 ttaacgtcagagactaaagtgataacagaagtgcatagtca-aaacttatttgtattt 325  Q
    |||||||||||||||||||||||||| |||||||| ||||| | |||||||| |||||    
T  48788674 ttaacgtcagagactaaagtgataacggaagtgcagagtcagagacttatttatattt 48788731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 24287723 - 24287651
Alignment:
Q  156 ggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcata 228  Q
    ||||||| | ||||||||||||||  ||||  | |||||| |||||||| |||||||| ||||||||||||||    
T  24287723 ggatattcatttttggttcagggactaaagcgaccattttctactttcactttagtccctgtgacacctcata 24287651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 325
Target Start/End: Original strand, 13578301 - 13578379
Alignment:
Q  247 catcatcacttagcagaataacttaacgtcagagactaaagtgataacagaagtgcatagtca-aaacttatttgtattt 325  Q
    |||||||||||| || ||| | |||||||||| ||||||||||||||| |||||||| |||||   ||||||||||||||    
T  13578301 catcatcacttaacataattatttaacgtcag-gactaaagtgataacggaagtgcagagtcagtgacttatttgtattt 13578379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 302
Target Start/End: Original strand, 19433914 - 19433969
Alignment:
Q  247 catcatcacttagcagaataacttaacgtcagagactaaagtgataacagaagtgc 302  Q
    |||||||||||| |||||| | |||||| || |||||||||||||||| |||||||    
T  19433914 catcatcacttaacagaattatttaacgccatagactaaagtgataactgaagtgc 19433969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 227
Target Start/End: Complemental strand, 385088 - 384991
Alignment:
Q  129 gatttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcat 227  Q
    |||||| |||||||||||| |||||  ||||||||| ||| | ||||  ||||||||| |  ||||| |||||||| ||||||| | ||||||||||||    
T  385088 gatttaagaatttgagatttaatttg-ggatattgattttcgattcatagatcaaagtgacaattttctactttcactttagtcaacgtgacacctcat 384991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 305
Target Start/End: Original strand, 6680513 - 6680571
Alignment:
Q  247 catcatcacttagcagaataacttaacgtcagagactaaagtgataacagaagtgcata 305  Q
    ||||| |||||| |||||| | ||||| ||| ||||||||||||||| |||||||||||    
T  6680513 catcagcacttaacagaattatttaacatcaaagactaaagtgataatagaagtgcata 6680571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 309
Target Start/End: Complemental strand, 12220165 - 12220104
Alignment:
Q  247 catcatcacttagcagaataacttaacgtcagagactaaagtgataacagaagtgcatagtca 309  Q
    |||||||||||| || ||| | ||||||||| |||||||||||||| |||||||||| |||||    
T  12220165 catcatcacttaacaaaattatttaacgtca-agactaaagtgatatcagaagtgcagagtca 12220104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 301
Target Start/End: Complemental strand, 44529171 - 44529117
Alignment:
Q  247 catcatcacttagcagaataacttaacgtcagagactaaagtgataacagaagtg 301  Q
    ||||||| |||| || ||| | |||||||||| ||||||||||||||||||||||    
T  44529171 catcatcgcttaacaaaattatttaacgtcagggactaaagtgataacagaagtg 44529117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #50
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 325
Target Start/End: Complemental strand, 8375035 - 8374978
Alignment:
Q  269 ttaacgtcagagactaaagtgataacagaagtgcatagtca-aaacttatttgtattt 325  Q
    ||||||||| |||||||||||||||| |||||||| | ||| |||||| |||||||||    
T  8375035 ttaacgtcaaagactaaagtgataacggaagtgcaaaatcagaaacttttttgtattt 8374978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #51
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 228
Target Start/End: Original strand, 24288741 - 24288818
Alignment:
Q  151 tttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcata 228  Q
    |||| ||||||| | ||| |||||| |||||||| | | |||||| |||||| |||||||||||||| |||| |||||    
T  24288741 tttagggatatttattttcggttcaaggatcaaaattaccattttctacttttattttagtccatgtcacacatcata 24288818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #52
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 111
Target Start/End: Original strand, 32794613 - 32794646
Alignment:
Q  78 attgattttgaacaaaagagagaattagatgaca 111  Q
    |||||||||||||||||||||| |||||||||||    
T  32794613 attgattttgaacaaaagagagcattagatgaca 32794646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #53
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 325
Target Start/End: Complemental strand, 46286616 - 46286567
Alignment:
Q  277 agagactaaagtgataacagaagtgcatagtca-aaacttatttgtattt 325  Q
    ||||| ||||||||||||||||||||| ||||| | ||||||||||||||    
T  46286616 agagattaaagtgataacagaagtgcagagtcagagacttatttgtattt 46286567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #54
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 325
Target Start/End: Original strand, 48647445 - 48647502
Alignment:
Q  269 ttaacgtcagagactaaagtgataacagaagtgcatagtca-aaacttatttgtattt 325  Q
    |||||||||| |||||||||||||||| ||||||| ||| | | ||||||||||||||    
T  48647445 ttaacgtcagggactaaagtgataacaaaagtgcagagtgagagacttatttgtattt 48647502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #55
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 325
Target Start/End: Complemental strand, 42477501 - 42477445
Alignment:
Q  269 ttaacgtcagagactaaagtgataacagaagtgcatagtcaaaacttatttgtattt 325  Q
    |||||||||| || |||| ||||||| |||||||| |||||  ||||||||||||||    
T  42477501 ttaacgtcagggattaaaatgataacggaagtgcagagtcaggacttatttgtattt 42477445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 41)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 45 - 325
Target Start/End: Original strand, 17330004 - 17330289
Alignment:
Q  45 aggatttaaaatgaagttggtgtttaagtgatgattgattttgaacaaaagagagaattagatgaca----ggggtttgagatttagtgatttaggaatt 140  Q
    |||| ||||||||||||||||||||||  |||| ||| |||||||||||||||||||||| ||||||    ||||||||| |||||| ||||||   |||    
T  17330004 aggacttaaaatgaagttggtgtttaatggatgcttggttttgaacaaaagagagaattatatgacattcaggggtttgaaatttagggatttaatgatt 17330103  T
Q  141 tgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatgtcatgt---t 237  Q
    |||||||||||||| ||||||||| ||| |||||||||| |||||| | ||||||||||||||| |||||||  |||||||||||||||||||| |   |    
T  17330104 tgagattcaatttagggatattgattttgggttcagggaccaaagtgaccattttttactttcactttagtctctgtgacacctcatatgtcatatcact 17330203  T
Q  238 gtgccacatcatcatcacttagcagaataacttaacgtcagagactaaagtgataacagaagtgcatagtca-aaacttatttgtattt 325  Q
    ||| ||   |||||||||||| ||||||||||||||||||  ||||||||||||||| ||| |||| ||||| | ||||||||||||||    
T  17330204 gtgtca---catcatcacttaacagaataacttaacgtcatggactaaagtgataacggaaatgcagagtcagagacttatttgtattt 17330289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 44 - 341
Target Start/End: Complemental strand, 7073990 - 7073686
Alignment:
Q  44 aaggatttaaaatgaagttggtgtttaagtgatgattgattttgaacaaaagagagaattagatga----caggggtttgagatttagtgatttaggaat 139  Q
    ||||| ||||||| |||||| |||||||  ||||||||||||||||| ||||||||||||||||||     |||| |||||||| |||||||||| | ||    
T  7073990 aaggacttaaaataaagttgatgtttaatggatgattgattttgaacgaaagagagaattagatgatatttagggatttgagatatagtgatttaaggat 7073891  T
Q  140 ttgagattcaatttatggatattg-agttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatgtcatgt-- 236  Q
    ||||||||||||||| | |||||| | |||||||||||||| |||||| ||||||||||| ||||  |||||||| |||||||||| ||||| |||||      
T  7073890 ttgagattcaatttaggaatattgaatttttggttcagggaccaaagtgatcattttttattttcgctttagtccctgtgacacctaatatgccatgtaa 7073791  T
Q  237 -tgtgccacatcatcatcacttagcagaataacttaacgtcagagactaaagtgataacagaagtgcatagtca-aaacttatttgtatttgatctcg-a 333  Q
     |||| ||   |||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||| | ||| | |||||||||||||| ||| || |    
T  7073790 ctgtgtca---catcatcacttaacagaataacttaacgtcagggactaaagtgataacggaagtgcagaatcagagacttatttgtatttaatcccgaa 7073694  T
Q  334 tcagagac 341  Q
    ||||||||    
T  7073693 tcagagac 7073686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 64 - 230
Target Start/End: Complemental strand, 39015324 - 39015154
Alignment:
Q  64 gtgtttaagtgatgattgattttgaacaaaagagagaattagatgaca----ggggtttgagatttagtgatttaggaatttgagattcaatttatggat 159  Q
    ||||||||  || |||| ||||| ||||||||||||||||||||||||    ||| |||||||||||| ||||| ||||||||| |||||||||  | ||    
T  39015324 gtgtttaatggaagattaattttaaacaaaagagagaattagatgacatttagggatttgagatttagggattttggaatttgatattcaatttgggaat 39015225  T
Q  160 attgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatg 230  Q
    ||||| |||||||||| ||| |||| | | |||||| |||||||| ||| |||| ||||||||||||||||    
T  39015224 attgatttttggttcaaggaccaaactgaccattttctactttcactttggtccctgtgacacctcatatg 39015154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 77 - 230
Target Start/End: Original strand, 40000152 - 40000309
Alignment:
Q  77 gattgattttgaacaaaagagagaattagatgacag----gggtttgagatttagtgatttaggaatttgagattcaatttatggatattgagttttggt 172  Q
    |||| ||||||||||||||||||||||||||||||     || |||||||||||  ||||||| ||||||| |||||||||  | ||||||| |||||||    
T  40000152 gattaattttgaacaaaagagagaattagatgacacttatggatttgagatttaaggatttagaaatttgatattcaatttgggaatattgatttttggt 40000251  T
Q  173 tcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatg 230  Q
    ||| ||| |||||| |||||||| |||||||| ||| |||| | ||||||||||||||    
T  40000252 tcaaggaccaaagtgatcattttctactttcactttggtccctctgacacctcatatg 40000309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 130 - 232
Target Start/End: Complemental strand, 43380836 - 43380734
Alignment:
Q  130 atttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatat 229  Q
    |||||||||||||| |||||||||  ||||||||| |||||||||||||| |||||| | |||||| |||||||| |||||| |||||||||||||||||    
T  43380836 atttaggaatttgaaattcaatttggggatattgatttttggttcagggaccaaagtgaccattttctactttcactttagttcatgtgacacctcatat 43380737  T
Q  230 gtc 232  Q
    |||    
T  43380736 gtc 43380734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 60 - 230
Target Start/End: Complemental strand, 32765260 - 32765086
Alignment:
Q  60 gttggtgtttaagtgatgattgattttgaacaaaagagagaattagatgacag----gggtttgagatttagtgatttaggaatttgagattcaatttat 155  Q
    |||| |||||||  || |||||||||||||||||| ||| ||||||||||||     || ||| | |||||| |||||||| |||||| |||||||||      
T  32765260 gttgctgtttaatggaagattgattttgaacaaaaaagataattagatgacatttaaggatttaaaatttagggatttagggatttgatattcaatttgg 32765161  T
Q  156 ggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatg 230  Q
    ||||||||| |||||||||||||| |||||  | |||||| |||||||| |||||||| | ||||||||||||||    
T  32765160 ggatattgatttttggttcagggaccaaagcgaccattttctactttcactttagtccctatgacacctcatatg 32765086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 77 - 230
Target Start/End: Original strand, 24459271 - 24459428
Alignment:
Q  77 gattgattttgaacaaaagagagaattagatgaca----ggggtttgagatttagtgatttaggaatttgagattcaatttatggatattgagttttggt 172  Q
    |||| ||||||||||||||||| ||||||| ||||    ||| ||| |||||||  |||||| |||||||| |||||||||  | ||||||| |||||||    
T  24459271 gattaattttgaacaaaagagataattagacgacatttagggatttcagatttaaggatttacgaatttgatattcaatttgggaatattgatttttggt 24459370  T
Q  173 tcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatg 230  Q
    |||||||||||||| | |||||| |||||||| ||| |||| | ||||||||||||||    
T  24459371 tcagggatcaaagtgaccattttctactttcactttggtccctatgacacctcatatg 24459428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 75 - 325
Target Start/End: Original strand, 31091342 - 31091586
Alignment:
Q  75 atgattgattttgaacaaaagagagaattagatgacag----gggtttgagatttagtgatttaggaatttgagattcaatttatggatattgagttttg 170  Q
    |||||| ||||||||||||||||||||||||||||||     || |||||||||||  ||||||||||||||| ||||||| |  | ||||||| |||||    
T  31091342 atgattaattttgaacaaaagagagaattagatgacatttacggatttgagatttaaggatttaggaatttgatattcaatctcggaatattgatttttg 31091441  T
Q  171 gttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatgtcatgttgtgccacatcatcatcacttagcagaataactt 270  Q
    |||||  || |||||| | |||||| |||||||| ||| |||  ||||||||||||||||           |||  |||||||||||| || | |   ||    
T  31091442 gttcaaagaccaaagtgaccattttctactttcactttggtctctgtgacacctcatatg-----------caccacatcatcacttaacatattttttt 31091530  T
Q  271 aacgtcagagactaaagtgataacagaagtgcatagtca-aaacttatttgtattt 325  Q
    |||||||||||||||||||||||| |||||||| |||||   ||||||||||||||    
T  31091531 aacgtcagagactaaagtgataacggaagtgcagagtcagggacttatttgtattt 31091586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 60 - 230
Target Start/End: Complemental strand, 24458383 - 24458209
Alignment:
Q  60 gttggtgtttaagtgatgattgattttgaacaaaagagagaattagatgacag----gggtttgagatttagtgatttaggaatttgagattcaatttat 155  Q
    ||||||||||||  || |||||||||||||||||| ||| ||||||||||||     || ||| | |||||| |||||||| || ||| |||||||||      
T  24458383 gttggtgtttaatggaagattgattttgaacaaaaaagataattagatgacatttaaggatttaaaatttagggatttagggatctgatattcaatttga 24458284  T
Q  156 ggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatg 230  Q
    ||||||||| ||||| || ||||| |||||| | |||||| |||||||| ||| |||| ||||||||||||||||    
T  24458283 ggatattgatttttgattgagggaccaaagtgaccattttctactttcactttggtccctgtgacacctcatatg 24458209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 129 - 236
Target Start/End: Complemental strand, 7412362 - 7412255
Alignment:
Q  129 gatttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcata 228  Q
    |||||||| ||||||||||||||||| ||||||||  |||||||| ||||| |||||| | |||||| || ||||| |||||||| |||||||| |||||    
T  7412362 gatttagggatttgagattcaatttagggatattgttttttggttgagggaacaaagtgaccattttctattttcactttagtccttgtgacacatcata 7412263  T
Q  229 tgtcatgt 236  Q
    || |||||    
T  7412262 tgccatgt 7412255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 60 - 230
Target Start/End: Complemental strand, 14704320 - 14704154
Alignment:
Q  60 gttggtgtttaagtgatgattgattttgaacaaaagagagaattagatgacaggggtttgag-atttagtgatttaggaatttgagattcaatttatgga 158  Q
    ||||||||||||  || |||||||||||||||||| | | ||||||||||||    ||| || |||||  |||||||| |||||| |||||||||  |||    
T  14704320 gttggtgtttaatggaagattgattttgaacaaaaaatataattagatgaca----tttaaggatttaa-gatttagggatttgatattcaatttgggga 14704226  T
Q  159 tattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatg 230  Q
    |||||| |||||||||| ||| |||||| |  ||||| |||||||| ||| |||| ||||||||||||||||    
T  14704225 tattgatttttggttcatggaccaaagtgactattttctactttcactttggtccctgtgacacctcatatg 14704154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 60 - 230
Target Start/End: Complemental strand, 2910423 - 2910249
Alignment:
Q  60 gttggtgtttaagtgatgattgattttgaacaaaagagagaattagatgacag----gggtttgagatttagtgatttaggaatttgagattcaatttat 155  Q
    ||||||||||||   | |||||||||||||||||  ||| || |||||||||     || ||||| |||||  |||||||| ||| || |||||||||      
T  2910423 gttggtgtttaatgtaagattgattttgaacaaacaagataactagatgacatttaaggatttgaaatttacggatttagggattcgatattcaatttgg 2910324  T
Q  156 ggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatg 230  Q
    ||||||||| |||||||||| ||| |||||| ||||||||  ||||||||||| |||| ||||| ||||||||||    
T  2910323 ggatattgatttttggttcatggaccaaagtgatcattttcgactttcattttggtccttgtgatacctcatatg 2910249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 64 - 230
Target Start/End: Original strand, 2911291 - 2911461
Alignment:
Q  64 gtgtttaagtgatgattgattttgaacaaaagagagaattagatgaca----ggggtttgagatttagtgatttaggaatttgagattcaatttatggat 159  Q
    ||||||||  || |||| ||||||||||||||||||||||||||||||    ||  |||||||||||  ||||||||||||||| |||||||||    ||    
T  2911291 gtgtttaatggaagattaattttgaacaaaagagagaattagatgacatttaggaatttgagatttaaggatttaggaatttgatattcaatttggaaat 2911390  T
Q  160 attgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatg 230  Q
    ||||| |||||||| || || |||||| |  ||||| |||||||| ||| || | | ||||||||||||||    
T  2911391 attgatttttggttaagagaccaaagtgacaattttctactttcactttggttcctatgacacctcatatg 2911461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 133 - 227
Target Start/End: Complemental strand, 31442597 - 31442503
Alignment:
Q  133 taggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcat 227  Q
    |||| ||||||||||||||||| ||||||||| ||| |||||||||| ||| ||  |||||||| ||||||| |||||||| | |||||||||||    
T  31442597 tagggatttgagattcaatttagggatattgattttcggttcagggaccaatgtgttcatttttgactttcactttagtccttatgacacctcat 31442503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 138 - 236
Target Start/End: Complemental strand, 33162029 - 33161931
Alignment:
Q  138 atttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatgtcatgt 236  Q
    ||||||||||| ||||  |||||| || ||||||||||||||  ||||| || ||||| ||||||||||||||||  |||||||||||||||| |||||    
T  33162029 atttgagattcgatttggggatatcgatttttggttcagggactaaagtgatgattttctactttcattttagtctttgtgacacctcatatgccatgt 33161931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 60 - 230
Target Start/End: Original strand, 39016192 - 39016357
Alignment:
Q  60 gttggtgtttaagtgatgattgattttgaacaaaagagagaattagatgacaggggtttgag-atttagtgatttaggaatttgagattcaatttatgga 158  Q
    ||||||||||||  || ||||| |||||||||||| ||| ||||||||||||    ||| || |||||  |||||||| |||| | |||||||||  | |    
T  39016192 gttggtgtttaatggaagattg-ttttgaacaaaatagataattagatgaca----tttaaggatttaa-gatttagggatttcatattcaatttgggca 39016285  T
Q  159 tattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatg 230  Q
    |||||| |||||||||||||| |||||| |  ||||| |||||||| ||| |||||||||||||||||||||    
T  39016286 tattgatttttggttcagggaccaaagtgacaattttctactttcactttggtccatgtgacacctcatatg 39016357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 325
Target Start/End: Original strand, 17466683 - 17466887
Alignment:
Q  130 atttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatat 229  Q
    ||||||| |||||| ||| |||||| ||||||| | |||||||| |||||||||| | | ||||||||||||||| |||||| | |||||||||||||||    
T  17466683 atttagggatttgaaatttaatttagggatattaatttttggtt-agggatcaaattgaccattttttactttcactttagtgcgtgtgacacctcatat 17466781  T
Q  230 gtcatgttgtgcca---cat------catcatcacttagcagaataacttaacgtcagagactaaagtgataacagaagtgcatagtca-aaacttattt 319  Q
    | | |||  | | |   |||      |||||||||||| |||||| | ||||||||  |||||||||||||||| |||||||| ||||| | |||| |||    
T  17466782 gccttgtcatcctaaaacatgtgtcacatcatcacttaacagaattatttaacgtcttagactaaagtgataacggaagtgcagagtcagagacttcttt 17466881  T
Q  320 gtattt 325  Q
    ||||||    
T  17466882 gtattt 17466887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 222
Target Start/End: Original strand, 5914872 - 5914978
Alignment:
Q  116 tttgagatttagtgatttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccat 215  Q
    |||||||||||| |||||||  |||| ||||||||  |  ||||||||| ||||||||||||||  ||||| |  ||||||||||||||||||||||  |    
T  5914872 tttgagatttagggatttagagattttagattcaagctggggatattgatttttggttcagggactaaagtgacaattttttactttcattttagtctct 5914971  T
Q  216 gtgacac 222  Q
    |||||||    
T  5914972 gtgacac 5914978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 132 - 213
Target Start/End: Complemental strand, 21732362 - 21732281
Alignment:
Q  132 ttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtcc 213  Q
    ||||| ||||||||||||||||  ||||||| | |||||||||||||| |||||| | |||||| |||||||| ||||||||    
T  21732362 ttagggatttgagattcaatttggggatattaatttttggttcagggaccaaagtgaccattttctactttcactttagtcc 21732281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 230
Target Start/End: Original strand, 43381045 - 43381145
Alignment:
Q  130 atttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatat 229  Q
    ||||||| ||||||||||||||||| ||||||||| |||  ||||||||| |||| | |  ||||| || ||| | |||||||| |||||||||||||||    
T  43381045 atttagggatttgagattcaatttagggatattgattttgtgttcagggaccaaaatgactattttctatttttactttagtccttgtgacacctcatat 43381144  T
Q  230 g 230  Q
    |    
T  43381145 g 43381145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 60 - 219
Target Start/End: Complemental strand, 31090480 - 31090317
Alignment:
Q  60 gttggtgtttaagtgatgattgattttgaacaaaagagagaattagatgac----aggggtttgagatttagtgatttaggaatttgagattcaatttat 155  Q
    ||||||||||||  || ||||||||||||||||||| || |||||||||||    | || ||| |  ||||| |||||| | |||||| |||||||||      
T  31090480 gttggtgtttaatggaagattgattttgaacaaaagggataattagatgacatttatggatttaaattttagggatttaaggatttgatattcaatttgg 31090381  T
Q  156 ggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtga 219  Q
    ||||||| | |||||||||||||| |||||    |||||| |||||||| ||| |||| |||||    
T  31090380 ggatattaatttttggttcagggaccaaagcggccattttctactttcactttggtccctgtga 31090317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 21733627 - 21733707
Alignment:
Q  132 ttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtc 212  Q
    ||||| ||||||||||||||||  | ||||||| ||| ||||||| || |||||| | ||||||||||||||| |||||||    
T  21733627 ttagggatttgagattcaatttgggaatattgattttcggttcagagaccaaagtgaccattttttactttcactttagtc 21733707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 227
Target Start/End: Original strand, 31443085 - 31443196
Alignment:
Q  116 tttgagatttagtgatttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccat 215  Q
    |||| ||| ||| ||||||||||||||||||| |||||   |||||||| ||| |||||||| | |||| | |  ||||| |||||||| |||||||  |    
T  31443085 tttgggatatagggatttaggaatttgagatttaatttggagatattgattttcggttcaggaaccaaaatgacaattttctactttcactttagtcact 31443184  T
Q  216 gtgacacctcat 227  Q
    ||||||||||||    
T  31443185 gtgacacctcat 31443196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 12746100 - 12746153
Alignment:
Q  175 agggatcaaagtaatcattttttactttcattttagtccatgtgacacctcata 228  Q
    |||||||||| | |||||||| |||||||| |||||||| ||||||||||||||    
T  12746100 agggatcaaaatgatcattttctactttcactttagtccctgtgacacctcata 12746153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 228
Target Start/End: Original strand, 34037544 - 34037625
Alignment:
Q  147 tcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcata 228  Q
    |||||||  ||||||||| |||||||||||| |||||||| |  ||||| |||| ||| |||||||  ||||||||||||||    
T  34037544 tcaatttgaggatattgatttttggttcaggaatcaaagtgactattttctactgtcactttagtctgtgtgacacctcata 34037625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 12396246 - 12396162
Alignment:
Q  138 atttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacac 222  Q
    ||||||||||| | ||  ||||||||| |||||||| || ||  ||||| |  ||||| ||||||||||||||||||||||||||    
T  12396246 atttgagattctaattggggatattgatttttggtttagtgactaaagtgactattttctactttcattttagtccatgtgacac 12396162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 33163462 - 33163502
Alignment:
Q  271 aacgtcagagactaaagtgataacagaagtgcatagtcaaa 311  Q
    |||||||||||||||||||||||| ||| ||||||||||||    
T  33163462 aacgtcagagactaaagtgataacggaaatgcatagtcaaa 33163502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 17466259 - 17466204
Alignment:
Q  181 caaagtaatcattttttactttcattttagtccatgtgacacctcatatgtcatgt 236  Q
    |||||| |||||||| |||||| | |||| |||||||||||||||||||| |||||    
T  17466259 caaagtgatcattttctacttttactttaatccatgtgacacctcatatgccatgt 17466204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 111
Target Start/End: Complemental strand, 33162071 - 33162037
Alignment:
Q  77 gattgattttgaacaaaagagagaattagatgaca 111  Q
    |||||||||||||||||||||| ||||||||||||    
T  33162071 gattgattttgaacaaaagagataattagatgaca 33162037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 111
Target Start/End: Original strand, 38984810 - 38984844
Alignment:
Q  77 gattgattttgaacaaaagagagaattagatgaca 111  Q
    |||| ||||||||||||||||||||||||||||||    
T  38984810 gatttattttgaacaaaagagagaattagatgaca 38984844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 39016385 - 39016419
Alignment:
Q  269 ttaacgtcagagactaaagtgataacagaagtgca 303  Q
    |||||||||||||||||||||||||| ||||||||    
T  39016385 ttaacgtcagagactaaagtgataacggaagtgca 39016419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 39256812 - 39256862
Alignment:
Q  58 aagttggtgtttaagtgatgattgattttgaacaaaagagagaattagatg 108  Q
    |||||||| |||||  || |||||| |||||||||||||||||||||||||    
T  39256812 aagttggtttttaatggaagattgactttgaacaaaagagagaattagatg 39256862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 325
Target Start/End: Complemental strand, 24458181 - 24458124
Alignment:
Q  269 ttaacgtcagagactaaagtgataacagaagtgcatagtca-aaacttatttgtattt 325  Q
    ||||||| ||||||||||||||||||  ||||| | ||||| ||||||||||||||||    
T  24458181 ttaacgttagagactaaagtgataacgaaagtgtagagtcagaaacttatttgtattt 24458124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 312
Target Start/End: Original strand, 31814324 - 31814389
Alignment:
Q  247 catcatcacttagcagaataacttaacgtcagagactaaagtgataacagaagtgcatagtcaaaa 312  Q
    |||||||||||| |||||| | |||| |  || ||||||||||||||| |||||||| ||||||||    
T  31814324 catcatcacttaacagaattatttaatgctagggactaaagtgataacggaagtgcagagtcaaaa 31814389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 325
Target Start/End: Original strand, 34037687 - 34037732
Alignment:
Q  281 actaaagtgataacagaagtgcatagtca-aaacttatttgtattt 325  Q
    ||||||||||||||||||||||| ||||| | ||||||||||||||    
T  34037687 actaaagtgataacagaagtgcagagtcatagacttatttgtattt 34037732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 305
Target Start/End: Original strand, 38856360 - 38856405
Alignment:
Q  260 cagaataacttaacgtcagagactaaagtgataacagaagtgcata 305  Q
    |||||| | ||||||||||||| ||||||||||||| |||||||||    
T  38856360 cagaattatttaacgtcagagattaaagtgataacaaaagtgcata 38856405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 204
Target Start/End: Complemental strand, 39999197 - 39999125
Alignment:
Q  129 gatttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttca 204  Q
    |||||||| |||||| ||||||||   ||||||||| |||| |||||||||||||||| |  ||||| ||||||||    
T  39999197 gatttagggatttgatattcaatt---ggatattgattttttgttcagggatcaaagtgacaattttctactttca 39999125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 14887378 - 14887450
Alignment:
Q  156 ggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcata 228  Q
    ||||||||| ||||  |||||||| || | | | |||||| |||||||| |||||||| ||||||||||||||    
T  14887378 ggatattgatttttaattcagggaccatattgaccattttctactttcactttagtccctgtgacacctcata 14887450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 236
Target Start/End: Original strand, 31814268 - 31814304
Alignment:
Q  200 tttcattttagtccatgtgacacctcatatgtcatgt 236  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  31814268 tttcattttagtctatgtgacacctcatatttcatgt 31814304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 308
Target Start/End: Complemental strand, 33161909 - 33161849
Alignment:
Q  248 atcatcacttagcagaataacttaacgtcagagactaaagtgataacagaagtgcatagtc 308  Q
    ||||||||||| || ||| | |||||||||  ||||||||||||||| ||||| |||||||    
T  33161909 atcatcacttaacaaaattatttaacgtcaaggactaaagtgataacggaagtacatagtc 33161849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 37607345 - 37607273
Alignment:
Q  156 ggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcata 228  Q
    ||||||||| ||||||||||| || |||||| |  ||||| ||| |||| |||||||| ||||||| ||||||    
T  37607345 ggatattgatttttggttcagagaccaaagtgactattttctacgttcactttagtccttgtgacatctcata 37607273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 58 - 236
Target Start/End: Original strand, 20599692 - 20599866
Alignment:
Q  58 aagttggtgtttaagtgatgattgattttgaacaaaagagagaattagatgacaggggtttgagatttagtgatttaggaatttgagattcaatttatgg 157  Q
    ||||||||||||||  || |||||||||||||||||||||||||||||||||||    || ||||||| | |||||||||||||||||||||||||  |     
T  20599692 aagttggtgtttaatggaagattgattttgaacaaaagagagaattagatgacat---ttagagattt-gcgatttaggaatttgagattcaatttggga 20599787  T
Q  158 atattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatgtcatgt 236  Q
    ||||| | |||||||||||||| |||||| | |||||||||||||||||||||||| ||||||||||||||||||||||    
T  20599788 atattaatttttggttcagggaccaaagtgaccattttttactttcattttagtccctgtgacacctcatatgtcatgt 20599866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 37 - 233
Target Start/End: Original strand, 4702976 - 4703174
Alignment:
Q  37 cacagtcaaggatttaaaatgaagttggtgtttaagtgatgattgattttgaacaaaagagagaattagatgaca----ggggtttgagatttagtgatt 132  Q
    |||||||| |||| ||| |  |||||| |||||||  || ||||||||||||||||||||||  |||| ||||||    ||| |||||||||||||||||    
T  4702976 cacagtcagggatataacagtaagttgatgtttaatggaagattgattttgaacaaaagaga--attaaatgacatttagggatttgagatttagtgatt 4703073  T
Q  133 taggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatgtc 232  Q
     ||  ||||||||||||||||  ||||||||| |||||| ||||||| |||||| |  ||||| |||||||| |||||||||| ||||| ||||||||||    
T  4703074 cagagatttgagattcaatttggggatattgatttttgggtcagggaccaaagtgacaattttatactttcactttagtccatatgacatctcatatgtc 4703173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 130 - 308
Target Start/End: Complemental strand, 19050505 - 19050320
Alignment:
Q  130 atttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatat 229  Q
    ||||||| ||||||||||||||||| ||||||||| ||||| |||| ||| |||||| |||||||| |||||||| ||||||||||||||||||||||||    
T  19050505 atttagggatttgagattcaatttagggatattgatttttgcttcaaggaccaaagtgatcattttatactttcactttagtccatgtgacacctcatat 19050406  T
Q  230 gtcat---gttgtgccacat----catcatcacttagcagaataacttaacgtcagagactaaagtgataacagaagtgcatagtc 308  Q
    | |||    | ||   ||||    ||||||||||||  ||||| | |||||||| ||||||||||||||||| |||||||| ||||    
T  19050405 gccatatcatcgtaaaacatgtcacatcatcacttaatagaattatttaacgtcggagactaaagtgataacggaagtgcagagtc 19050320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 64 - 227
Target Start/End: Complemental strand, 4702102 - 4701935
Alignment:
Q  64 gtgtttaagtgatgattgattttgaacaaaagagagaattagatgaca----ggggtttgagatttagtgatttaggaatttgagattcaatttatggat 159  Q
    ||||||||  || ||||| |||||||||||| ||||||||| ||||||    ||| |||||||| ||| |||||||  ||||||||||||||||  ||||    
T  4702102 gtgtttaatggaagattgtttttgaacaaaatagagaattaaatgacatgtagggatttgagatctagggatttagagatttgagattcaattttaggat 4702003  T
Q  160 attgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcat 227  Q
    ||||| ||||| |||||||| |||||| |  ||||| |||||||| ||||||||||||||||| ||||    
T  4702002 attgacttttgtttcagggaccaaagtgactattttctactttcactttagtccatgtgacacttcat 4701935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 64 - 230
Target Start/End: Complemental strand, 54574744 - 54574574
Alignment:
Q  64 gtgtttaagtgatgattgattttgaacaaaagagagaattagatgaca----ggggtttgagatttagtgatttaggaatttgagattcaatttatggat 159  Q
    ||||||||  || |||| ||||||||| ||||||||||||||||||||    ||| |||||||||||  || |||||||||||| |||||||||  | ||    
T  54574744 gtgtttaatggaagattaattttgaactaaagagagaattagatgacatttagggatttgagatttaaggagttaggaatttgatattcaatttgagaat 54574645  T
Q  160 attgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatg 230  Q
     |||| ||||||||| ||||||||||| |||||||| |||||||| ||  ||||  |||||||||||||||    
T  54574644 tttgatttttggttcggggatcaaagtgatcattttctactttcacttcggtccccgtgacacctcatatg 54574574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 64 - 230
Target Start/End: Original strand, 47878288 - 47878458
Alignment:
Q  64 gtgtttaagtgatgattgattttgaacaaaagagagaattagatgaca----ggggtttgagatttagtgatttaggaatttgagattcaatttatggat 159  Q
    ||||||||  || |||| ||||||| |||||||||||||||||||| |    ||| |||| ||||||   |||||||||||||| |||||||||  | ||    
T  47878288 gtgtttaatggaagattaattttgagcaaaagagagaattagatgagatttagggatttgtgatttaagaatttaggaatttgatattcaattttggaat 47878387  T
Q  160 attgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatg 230  Q
    ||||| |||||||||||||| |||||| | |||||| |||||||| ||| |||| | ||||||||||||||    
T  47878388 attgatttttggttcagggaccaaagtgaccattttctactttcactttggtccctatgacacctcatatg 47878458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 129 - 325
Target Start/End: Complemental strand, 42278299 - 42278113
Alignment:
Q  129 gatttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcata 228  Q
    |||||||| |||||| |||||||||  ||||||||| |||||||||||||| |||||| | |||||| || ||||| ||| |||| ||||||||||||||    
T  42278299 gatttagggatttgatattcaatttggggatattgatttttggttcagggaccaaagtgaccattttctagtttcactttggtccctgtgacacctcata 42278200  T
Q  229 tgtcatgttgtgccacatcatcatcacttagcagaataacttaacgtcagagactaaagtgataacagaagtgcatagtca-aaacttatttgtattt 325  Q
    ||           |||  |||||||||||| |||| |   |||||||||| || |||||||||||| |||||||| |||||  |||||||||||||||    
T  42278199 tg-----------caccacatcatcacttaacagatttttttaacgtcagggattaaagtgataacggaagtgcagagtcaggaacttatttgtattt 42278113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 133 - 222
Target Start/End: Original strand, 26685321 - 26685410
Alignment:
Q  133 taggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacac 222  Q
    |||| ||||||||||||| ||||| ||||||| ||||||||||||||| ||| | |  ||||| ||||||||||||||||| ||||||||    
T  26685321 tagggatttgagattcaagttatgaatattgatttttggttcagggattaaactgactattttctactttcattttagtccctgtgacac 26685410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 247 - 325
Target Start/End: Complemental strand, 39869063 - 39868986
Alignment:
Q  247 catcatcacttagcagaataacttaacgtcagagactaaagtgataacagaagtgcatagtcaaaacttatttgtattt 325  Q
    |||||||||||| || ||| | |||||||||||||||||||||||||| |||||||| ||||  ||||| |||||||||    
T  39869063 catcatcacttaacataattatttaacgtcagagactaaagtgataacggaagtgcagagtc-gaacttgtttgtattt 39868986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 26685408 - 26685465
Alignment:
Q  253 cacttagcagaataacttaacgtcagagactaaagtgataacagaagtgcatagtcaa 310  Q
    |||||| |||||| | |||| ||||||||||||||||||||| |||||||||||||||    
T  26685408 cacttaacagaattatttaatgtcagagactaaagtgataacggaagtgcatagtcaa 26685465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 42278807 - 42278900
Alignment:
Q  64 gtgtttaagtgatgattgattttgaacaaaagagagaattagatgac----aggggtttgagatttagtgatttaggaatttgagattcaattt 153  Q
    ||||||||  || |||| ||||||||||||||||||||||| |||||    |||| |||||||||||  ||||||| ||||||| |||||||||    
T  42278807 gtgtttaatggaagattaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttagaaatttgatattcaattt 42278900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 129 - 225
Target Start/End: Original strand, 42391759 - 42391855
Alignment:
Q  129 gatttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctc 225  Q
    |||||||| |||||||| |||||||   |||||  | |||| |||||||||  ||||| | |||||| |||||||| ||||||||||||||||||||    
T  42391759 gatttagggatttgagactcaatttgaagatatgaatttttagttcagggactaaagtgaccattttctactttcactttagtccatgtgacacctc 42391855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 6039446 - 6039367
Alignment:
Q  58 aagttggtgtttaagtgatgattgattttgaacaaaagagagaattagatgac----aggggtttgagatttagtgattt 133  Q
    |||||| |||||||  || |||||||||||||||||||||||||||| |||||    |||| |||||||| |||||||||    
T  6039446 aagttgatgtttaatggaagattgattttgaacaaaagagagaattatatgacatttagggatttgagatctagtgattt 6039367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 48740006 - 48740056
Alignment:
Q  253 cacttagcagaataacttaacgtcagagactaaagtgataacagaagtgca 303  Q
    |||||| |||||| | |||||||||| ||||||||||||||||||||||||    
T  48740006 cacttaacagaattatttaacgtcagggactaaagtgataacagaagtgca 48740056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 21622066 - 21621994
Alignment:
Q  156 ggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcata 228  Q
    ||||||||  |||||||||||| |||||||| | |||||| |||||||| |||||| | |||||||| |||||    
T  21622066 ggatattggtttttggttcaggaatcaaagtgaccattttatactttcactttagtgcttgtgacacatcata 21621994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 32244517 - 32244445
Alignment:
Q  156 ggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcata 228  Q
    ||||||||| ||| ||| ||| ||||||||| | ||||||||||||||| |||||||  ||||||||| ||||    
T  32244517 ggatattgattttcggtgcagagatcaaagtgaccattttttactttcactttagtctctgtgacaccccata 32244445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 325
Target Start/End: Original strand, 4703197 - 4703276
Alignment:
Q  247 catcatcacttagcagaataacttaacgtcagagactaaagtgataacagaagtgcatagtcaaa-acttatttgtattt 325  Q
    ||||||||||||  ||||| | |||| | ||||||||||||||||||| |||||| | ||||||| |||| |||||||||    
T  4703197 catcatcacttaatagaattatttaatgccagagactaaagtgataacggaagtgtacagtcaaagacttctttgtattt 4703276  T

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Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 325
Target Start/End: Complemental strand, 50694892 - 50694813
Alignment:
Q  247 catcatcacttagcagaataacttaacgtcagagactaaagtgataacagaagtgcatagtca-aaacttatttgtattt 325  Q
    |||||||||||| ||||||   |||||||||| |||||||| |||||| |||||||| | ||| |||||||||| |||||    
T  50694892 catcatcacttaacagaattttttaacgtcagggactaaagagataacggaagtgcagaatcagaaacttatttatattt 50694813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 132 - 236
Target Start/End: Complemental strand, 56041227 - 56041127
Alignment:
Q  132 ttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatgt 231  Q
    ||||| |||||| ||||||||| |||||||||| |||| |||||||    ||||| | ||||||||||| ||||||  |||   ||||||| ||||||||    
T  56041227 ttagggatttgaaattcaatttgtggatattgatttttagttcagg----aaagtgaacattttttactctcatttaggtcttagtgacacttcatatgt 56041132  T
Q  232 catgt 236  Q
    |||||    
T  56041131 catgt 56041127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 32244582 - 32244640
Alignment:
Q  170 ggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcata 228  Q
    |||||||  ||||||||||  |||||||||||||| |||||||  ||||||||||||||    
T  32244582 ggttcagaaatcaaagtaacaattttttactttcactttagtcactgtgacacctcata 32244640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 209
Target Start/End: Complemental strand, 26170913 - 26170830
Alignment:
Q  129 gatttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagta---atcattttttactttcatttta 209  Q
    |||||||| |||| | |||||||||  | ||||||| ||| ||||||||||||||||||   ||||||||||||  ||||||||    
T  26170913 gatttagggatttcaaattcaatttgggaatattgattttcggttcagggatcaaagtagtgatcattttttacagtcatttta 26170830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 21623001 - 21623069
Alignment:
Q  160 attgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcata 228  Q
    ||||| ||| ||||||  || |||||| | |||||| ||||||||||||||||  ||||||||||||||    
T  21623001 attgattttcggttcatagagcaaagtgaccattttctactttcattttagtctctgtgacacctcata 21623069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 25810348 - 25810384
Alignment:
Q  191 attttttactttcattttagtccatgtgacacctcat 227  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  25810348 attttatactttcactttagtccatgtgacacctcat 25810384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 50694962 - 50694898
Alignment:
Q  166 ttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatg 230  Q
    ||||| ||||||||| ||||| |  ||||| ||||||||||||  ||| ||||||||||||||||    
T  50694962 ttttgattcagggattaaagtgacaattttctactttcattttgatccctgtgacacctcatatg 50694898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 309
Target Start/End: Original strand, 53771035 - 53771091
Alignment:
Q  253 cacttagcagaataacttaacgtcagagactaaagtgataacagaagtgcatagtca 309  Q
    |||||| |||||| | |||||||||  ||||||||||||||| |||||||| |||||    
T  53771035 cacttaacagaattatttaacgtcaatgactaaagtgataacggaagtgcagagtca 53771091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 58 - 236
Target Start/End: Original strand, 6031 - 6210
Alignment:
Q  58 aagttggtgtttaagtgatgattgattttgaacaaaagagagaattagatgaca----ggggtttgagatttagtgatttaggaatttgagattcaattt 153  Q
    |||||||||||||| ||| |||||||||||||||||||||| ||||| ||||||    ||| |||||||||||| |||||||||||||||||||  ||||    
T  6031 aagttggtgtttaattgaagattgattttgaacaaaagagataattatatgacatttagggatttgagatttagggatttaggaatttgagattatattt 6130  T
Q  154 atggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatgtcatgt 236  Q
      ||||||||| |||||||||||||| |||||| | ||||||||||||||| ||   |||||||| |||||||||||||||||    
T  6131 ggggatattgatttttggttcagggaccaaagtgaccattttttactttcactt---tccatgtgtcacctcatatgtcatgt 6210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 63 - 227
Target Start/End: Complemental strand, 5922 - 5769
Alignment:
Q  63 ggtgtttaagtgatgattgattttgaacaaaagagagaattagatgacaggggtttgagatttagtgatttaggaatttgagattcaatttatggatatt 162  Q
    |||||||||  || |||||||||||||||||||||||||||||||||||           ||||  || ||||| |||||||||| |||||  |||||||    
T  5922 ggtgtttaatggaagattgattttgaacaaaagagagaattagatgaca-----------tttaaggaattagggatttgagatttaatttgaggatatt 5834  T
Q  163 gagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcat 227  Q
    || ||||||||||||||||||||| | || |||||||||||| ||||||| ||||||||||||||    
T  5833 gatttttggttcagggatcaaagtgaccactttttactttcactttagtctatgtgacacctcat 5769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 7e-37; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 58 - 229
Target Start/End: Complemental strand, 6612755 - 6612580
Alignment:
Q  58 aagttggtgtttaagtgatgattgattttgaacaaaagagagaattagatgaca----ggggtttgagatttagtgatttaggaatttgagattcaattt 153  Q
    ||||||||||||||  || |||||||||| ||||||| ||||||||||||||||    ||| ||||||||||||  ||||||| ||||||||||||||||    
T  6612755 aagttggtgtttaatggaagattgattttaaacaaaaaagagaattagatgacatttagggatttgagatttaggaatttagggatttgagattcaattt 6612656  T
Q  154 atggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatat 229  Q
      ||||||||| |||||||||| |||  ||||| |||||||| |||||| | |||||||| |||||||||||||||    
T  6612655 ggggatattgatttttggttcaaggacaaaagtgatcattttctactttgaatttagtccctgtgacacctcatat 6612580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 60 - 227
Target Start/End: Complemental strand, 52439784 - 52439613
Alignment:
Q  60 gttggtgtttaagtgatgattgattttgaacaaaagagagaattagatgacag----gggtttgagatttagtgatttaggaatttgagattcaatttat 155  Q
    ||||||||||||  || |||||||||||||||||| ||| ||||||||||||     || ||| | |||||| ||||||||||||||| |||||||||      
T  52439784 gttggtgtttaatggaagattgattttgaacaaaaaagataattagatgacatttaaggatttaaaatttagggatttaggaatttgatattcaatttga 52439685  T
Q  156 ggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcat 227  Q
    ||||||||| |||||||| |||||||||||| | |||||| |||||||| ||| |||| |||||||| ||||    
T  52439684 ggatattgatttttggtttagggatcaaagtgaccattttctactttcactttggtccttgtgacacatcat 52439613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 131 - 236
Target Start/End: Complemental strand, 25038149 - 25038044
Alignment:
Q  131 tttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatg 230  Q
    |||||| ||||||||||||||||| ||||||||| |||||||||||||| |||||| || ||||| |||||||| |||||| ||||||||||||||||||    
T  25038149 tttagggatttgagattcaatttagggatattgatttttggttcagggaccaaagtgataattttctactttcactttagttcatgtgacacctcatatg 25038050  T
Q  231 tcatgt 236  Q
    | ||||    
T  25038049 ttatgt 25038044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 131 - 236
Target Start/End: Complemental strand, 25043361 - 25043256
Alignment:
Q  131 tttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatg 230  Q
    |||||| ||||||||||||||||| ||||||||| |||||||||||||| |||||| || ||||| |||||||| |||||| ||||||||||||||||||    
T  25043361 tttagggatttgagattcaatttagggatattgatttttggttcagggaccaaagtgataattttctactttcactttagttcatgtgacacctcatatg 25043262  T
Q  231 tcatgt 236  Q
    | ||||    
T  25043261 ttatgt 25043256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 58 - 236
Target Start/End: Complemental strand, 51450345 - 51450163
Alignment:
Q  58 aagttggtgtttaagtgatgattgattttgaacaaaagagagaattagatgacag----gggtttgagatttagtgatttaggaatttgagattcaattt 153  Q
    ||||||||||||||  || |||||||||||||||||||||| ||||||||||||     || ||||||||||||  |||| |  ||||||||||||| ||    
T  51450345 aagttggtgtttaatggaagattgattttgaacaaaagagataattagatgacacttacggatttgagatttagaaattttgagatttgagattcaagtt 51450246  T
Q  154 atggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatgtcatgt 236  Q
      ||||||| | |||||||||| |||  | ||| |||||||| |||||||| |||||||| |||||||||||||||| |||||    
T  51450245 ggggatatttatttttggttcatggactatagtgatcattttctactttcagtttagtccctgtgacacctcatatgacatgt 51450163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 122 - 325
Target Start/End: Original strand, 9340891 - 9341084
Alignment:
Q  122 atttagtgatttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgaca 221  Q
    |||||| ||||||||||||||| ||||| |||  | ||||||| |||||||||||||| |||||| | |||||| |||||||| ||| |||| |||||||    
T  9340891 atttagggatttaggaatttgatattcattttgggaatattgaattttggttcagggaccaaagtgaccattttctactttcactttggtccctgtgaca 9340990  T
Q  222 cctcatatgtcatgttgtgccacatcatcatcacttagcagaataacttaacgtcagagactaaagtgataacagaagtgcatagtca-aaacttatttg 320  Q
    |||||||        || ||||   ||||||||||||  ||| |   ||||||||||||||||||||||||||||||||||| ||||| | |||||||||    
T  9340991 cctcata--------tgcgcca---catcatcacttaatagatttttttaacgtcagagactaaagtgataacagaagtgcaaagtcagagacttatttg 9341079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 40 - 230
Target Start/End: Complemental strand, 34085870 - 34085691
Alignment:
Q  40 agtcaaggatttaaaatgaagttggtgtttaagtgatgattgattttgaacaaaagagagaattagatgacaggggtttgagatttagtgatttaggaat 139  Q
    |||||||||| ||| |  |||||| || ||||  || |||||||||||||||||||| ||||||||||||||           ||||||| |||||||||    
T  34085870 agtcaaggatataacagtaagttgttgattaaaggaagattgattttgaacaaaagaaagaattagatgaca-----------tttagtggtttaggaat 34085782  T
Q  140 ttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatg 230  Q
    |||| |||||||||  ||||||||| |||||||||| | |||||||| |||||||| ||||||||||||||||| | || ||| |||||||    
T  34085781 ttgaaattcaatttggggatattgatttttggttcaagcatcaaagtgatcattttctactttcattttagtccctatgtcacatcatatg 34085691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 60 - 230
Target Start/End: Complemental strand, 7944474 - 7944304
Alignment:
Q  60 gttggtgtttaagtgatgattgattttgaacaaaagagagaattagatgacaggggtttgag-atttagtgatttaggaatttgagattcaatttatgga 158  Q
    ||||||||||||  || ||||||||||||| |||| ||| |||||||||||| |  ||| || |||||  |||||||| |||||| |||||||||  |||    
T  7944474 gttggtgtttaatggaagattgattttgaataaaaaagataattagatgacatgcatttaaggatttaa-gatttagggatttgatattcaatttgggga 7944376  T
Q  159 tattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatg 230  Q
    |||||| ||||||| |||||| |||||| || ||||| |||||||| ||| ||| |||||||||||||||||    
T  7944375 tattgatttttggtccagggaccaaagtgataattttctactttcactttggtctatgtgacacctcatatg 7944304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 77 - 236
Target Start/End: Original strand, 22857375 - 22857539
Alignment:
Q  77 gattgattttgaacaaaagagagaattagatga----caggggtttgaga-tttagtgatttaggaatttgagattcaatttatggatattgagttttgg 171  Q
    ||||||||||||||||||  || ||||||||||     |||| ||||||| ||||| |||||| | ||||||||||||||||  | ||||||| ||||||    
T  22857375 gattgattttgaacaaaaaggaaaattagatgatatttagggatttgagattttagggatttaaggatttgagattcaatttgggtatattgatttttgg 22857474  T
Q  172 ttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatgtcatgt 236  Q
    |||||   ||||||| |  | ||| |||||||| |||||||||||||||||||||||||||||||    
T  22857475 ttcagttttcaaagtgactagtttctactttcactttagtccatgtgacacctcatatgtcatgt 22857539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 60 - 325
Target Start/End: Original strand, 32665577 - 32665829
Alignment:
Q  60 gttggtgtttaagtgatgattgattttgaacaaaagagagaattagatgacaggggtttgag-atttagtgatttaggaatttgagattcaatttatgga 158  Q
    ||||||||| ||  || |||||||||||||||||| ||| ||||||||||||    ||| || |||||  |||||||| |||||| |||||||||  |||    
T  32665577 gttggtgttgaatagaagattgattttgaacaaaaaagataattagatgaca----tttaaggatttaa-gatttagggatttgatattcaatttgggga 32665671  T
Q  159 tattgagttttg-gttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatgtcatgttgtgccacatcatcatcactt 257  Q
    |||||| ||||| ||||||||| |||||| | |||||| |||||||| ||| |||| ||||||||||||||        || ||||   |||||||||||    
T  32665672 tattgatttttgtgttcagggaccaaagtgaccattttctactttcactttggtccttgtgacacctcata--------tgcgcca---catcatcactt 32665760  T
Q  258 agcagaataacttaacgtcagagactaaagtgataacagaagtgcatagtcaaa-acttatttgtattt 325  Q
    | |||| |    ||||| ||| ||||||||||||||| |||||||| ||||||| ||||||||||||||    
T  32665761 aacagatttttgtaacgccagggactaaagtgataacggaagtgcagagtcaaagacttatttgtattt 32665829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 226
Target Start/End: Original strand, 52440377 - 52440530
Alignment:
Q  77 gattgattttgaacaaaagagagaattagatgac----aggggtttgagatttagtgatttaggaatttgagattcaatttatggatattgagttttggt 172  Q
    |||| ||||| |||||||||||||||||||||||    |||| |||||||||||  ||||||||||||||| |||||||||  | ||| | | |||||||    
T  52440377 gattaattttaaacaaaagagagaattagatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgggaatacttatttttggt 52440476  T
Q  173 tcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctca 226  Q
    ||||||| |||||| |  ||||| |||||||| ||| | || ||||||||||||    
T  52440477 tcagggaccaaagtgactattttctactttcactttggcccctgtgacacctca 52440530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 129 - 228
Target Start/End: Original strand, 6613840 - 6613939
Alignment:
Q  129 gatttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcata 228  Q
    |||||||| ||||||||||||||||  ||||||||| |||||||||||||| ||||||||| ||||  |||||||| |||||||| ||||| ||| ||||    
T  6613840 gatttagggatttgagattcaatttggggatattgatttttggttcagggaacaaagtaataatttcctactttcactttagtccctgtgaaaccccata 6613939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 227
Target Start/End: Complemental strand, 11830158 - 11830061
Alignment:
Q  130 atttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcat 227  Q
    ||||| ||||||||||||||||||  ||||||||| |||||||||  |||||||| | | |||||| |||||||| |||| |||||||||||||||||    
T  11830158 atttaagaatttgagattcaattttaggatattgatttttggttctaggatcaaaatgaccattttctactttcactttaatccatgtgacacctcat 11830061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 236
Target Start/End: Complemental strand, 22856939 - 22856843
Alignment:
Q  138 atttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatgtcatgt 236  Q
    ||||||||||||||||  ||||||||| |||||||||||| |  ||||| |||||||| |||||||| |||||||  |||||||||||||||| |||||    
T  22856939 atttgagattcaatttgaggatattgaattttggttcaggaactaaagtgatcattttctactttcactttagtc--tgtgacacctcatatgccatgt 22856843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 130 - 235
Target Start/End: Complemental strand, 3117918 - 3117813
Alignment:
Q  130 atttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatat 229  Q
    ||||||| |||||| |||||||||  ||||||| | |||||||||| |||  ||| | |||||||| |||||||| |||||||  |||||||||||||||    
T  3117918 atttagggatttgatattcaatttggggatattaatttttggttcaaggactaaaatgatcattttctactttcactttagtcattgtgacacctcatat 3117819  T
Q  230 gtcatg 235  Q
    ||||||    
T  3117818 gtcatg 3117813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 158 - 325
Target Start/End: Original strand, 7945456 - 7945613
Alignment:
Q  158 atattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatgtcatgttgtgccacatcatcatcactt 257  Q
    ||||||| |||||||| ||||| |||||| | |||||| |||||||| |||  ||| |||||||||||||||||        ||||||||||||   |||    
T  7945456 atattgatttttggtttagggaccaaagtgaccattttctactttcactttgatccttgtgacacctcatatgt--------gccacatcatca---ctt 7945544  T
Q  258 agcagaataacttaacgtcagagactaaagtgataacagaagtgcatagtca-aaacttatttgtattt 325  Q
    |||| | |   |||||||||| ||||||||||||||| |||||||||||||| | ||||||||||||||    
T  7945545 agcatatttttttaacgtcagggactaaagtgataacggaagtgcatagtcagagacttatttgtattt 7945613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 129 - 230
Target Start/End: Complemental strand, 9339896 - 9339795
Alignment:
Q  129 gatttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcata 228  Q
    |||||||| |||||| |||||||||  ||||||||| ||||||||||| || |||||| | |||||| |||||||| ||| |||| ||||||| ||||||    
T  9339896 gatttagggatttgatattcaatttggggatattgatttttggttcagagaccaaagtgaccattttctactttcactttggtccctgtgacatctcata 9339797  T
Q  229 tg 230  Q
    ||    
T  9339796 tg 9339795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 224
Target Start/End: Complemental strand, 1001400 - 1001326
Alignment:
Q  150 atttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacct 224  Q
    ||||| ||||||||| ||| |||||| ||||||||||||  ||||| |||||||| |||||||||||||||||||    
T  1001400 atttagggatattgattttcggttcaaggatcaaagtaactattttctactttcactttagtccatgtgacacct 1001326  T

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Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 230
Target Start/End: Complemental strand, 32664808 - 32664652
Alignment:
Q  77 gattgattttgaacaaaagagagaattagatgaca----ggggtttgagatttagtgatttaggaatttgagattcaatttatggatattgagttttggt 172  Q
    |||| ||||| ||||||||||||||||| || | |    ||| |||||||||||  ||||||||||||||| |||||||||  | ||||||| ||||| |    
T  32664808 gattaattttaaacaaaagagagaattaaatcagatttagggatttgagatttaaggatttaggaatttgatattcaatttgggaatattgatttttgat 32664709  T
Q  173 tcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatg 230  Q
    |||  || |||||| |  ||||| |||||||||||| |||| | ||||||||||||||    
T  32664708 tca-agaccaaagtgactattttctactttcattttggtccctttgacacctcatatg 32664652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 222
Target Start/End: Complemental strand, 5782662 - 5782551
Alignment:
Q  111 aggggtttgagatttagtgatttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttag 210  Q
    |||| |||| ||||||  ||||||||||| ||||||| |  ||  ||||||||| |||||||| |||||| ||||| |  |||||||| ||||| |||||    
T  5782662 agggatttgtgatttaaggatttaggaatgtgagattgatattggggatattgatttttggtttagggattaaagtgacaattttttagtttcactttag 5782563  T
Q  211 tccatgtgacac 222  Q
    ||||||||||||    
T  5782562 tccatgtgacac 5782551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 133 - 227
Target Start/End: Complemental strand, 39977598 - 39977504
Alignment:
Q  133 taggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcat 227  Q
    |||| ||||| ||||||||||  ||||||||| ||||||||||| || |||||| |||||||| ||| |  | |||||||| |||||||||||||    
T  39977598 tagggatttgcgattcaatttgaggatattgatttttggttcagagaccaaagttatcattttctacatctactttagtccttgtgacacctcat 39977504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 226
Target Start/End: Original strand, 1001818 - 1001852
Alignment:
Q  192 ttttttactttcattttagtccatgtgacacctca 226  Q
    |||||||||||||||||||||||||||||||||||    
T  1001818 ttttttactttcattttagtccatgtgacacctca 1001852  T

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Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 305
Target Start/End: Complemental strand, 1407871 - 1407725
Alignment:
Q  156 ggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatgtcatgttgtgccacatcatcatcac 255  Q
    ||||||| | ||| |||||| ||| |||||| || ||||| |||||||| |||||||||||||||||||| | ||||  |   |   ||| ||||||||     
T  1407871 ggatattaattttcggttcaaggaccaaagtgataattttctactttcactttagtccatgtgacacctc-tttgtc--ggcataaaacaacatcatcag 1407775  T
Q  256 ttagcagaataacttaacgtcagagactaaagtgataacagaagtgcata 305  Q
    ||| || ||| | |||||||||| |||||||||||||||| |||||||||    
T  1407774 ttaacaaaattatttaacgtcagggactaaagtgataacataagtgcata 1407725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 227
Target Start/End: Complemental strand, 16249913 - 16249815
Alignment:
Q  129 gatttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcat 227  Q
    |||||||| |||| |||||||||||| ||||||||| ||| ||||||||||  ||| | | |||||| |||||||| ||||| || | ||||| |||||    
T  16249913 gatttagggatttaagattcaatttagggatattgattttcggttcagggactaaaatgaccattttctactttcactttagcccctatgacagctcat 16249815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 227
Target Start/End: Complemental strand, 26518359 - 26518261
Alignment:
Q  129 gatttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcat 227  Q
    |||||||||||||||||||||||||   |||||||  ||| ||||||| || |||||| | |||||| ||| |||| |||| |  ||||||||||||||    
T  26518359 gatttaggaatttgagattcaatttggagatattggttttcggttcagagaccaaagtgaccattttctaccttcactttaatttatgtgacacctcat 26518261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 186
Target Start/End: Original strand, 51453579 - 51453649
Alignment:
Q  116 tttgagatttagtgatttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagt 186  Q
    |||||||||||  |||||||| |||||| |||||||||  ||||||||| || || |||||||||||||||    
T  51453579 tttgagatttaaggatttagggatttgaaattcaatttgcggatattgatttatgattcagggatcaaagt 51453649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 534428 - 534500
Alignment:
Q  156 ggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcata 228  Q
    ||||||||| ||| | |||  |||||||||| ||||||||||||||||| ||||||||  ||||||| |||||    
T  534428 ggatattgattttcgattcgtggatcaaagtgatcattttttactttcactttagtccccgtgacacgtcata 534500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 10333166 - 10333250
Alignment:
Q  247 catcatcacttagcagaataacttaacgtcagagactaaagtgataacagaagtgcatagtca-aaacttatttgtatttgatct 330  Q
    |||||||||||| |||| |   ||||||  |||||||||||||||||| |||||||| ||||| | |||||||||||||| ||||    
T  10333166 catcatcacttaacagatttttttaacgctagagactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatct 10333250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 294
Target Start/End: Complemental strand, 33342559 - 33342512
Alignment:
Q  247 catcatcacttagcagaataacttaacgtcagagactaaagtgataac 294  Q
    |||||||||||| || ||| | ||||||||||||||||||||||||||    
T  33342559 catcatcacttaacataattatttaacgtcagagactaaagtgataac 33342512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 111
Target Start/End: Complemental strand, 22856989 - 22856955
Alignment:
Q  77 gattgattttgaacaaaagagagaattagatgaca 111  Q
    |||||||||| ||||||||||||||||||||||||    
T  22856989 gattgatttttaacaaaagagagaattagatgaca 22856955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 309
Target Start/End: Original strand, 22857559 - 22857621
Alignment:
Q  247 catcatcacttagcagaataacttaacgtcagagactaaagtgataacagaagtgcatagtca 309  Q
    |||||||||||| || ||| | |||||||||  ||||||||||||||| |||||||| |||||    
T  22857559 catcatcacttaacataattatttaacgtcatggactaaagtgataacggaagtgcaaagtca 22857621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 222
Target Start/End: Complemental strand, 44719593 - 44719527
Alignment:
Q  156 ggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacac 222  Q
    ||||||||| |||  ||||||||| |||||| |  ||||| ||||||||||||||| ||||||||||    
T  44719593 ggatattgattttcagttcagggagcaaagtgacaattttctactttcattttagttcatgtgacac 44719527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 325
Target Start/End: Complemental strand, 5782535 - 5782478
Alignment:
Q  269 ttaacgtcagagactaaagtgataacagaagtgcatagtca-aaacttatttgtattt 325  Q
    |||||||||||||||||||||||||  |||||||||| ||| | |||| |||||||||    
T  5782535 ttaacgtcagagactaaagtgataagggaagtgcataatcagagacttctttgtattt 5782478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 228
Target Start/End: Complemental strand, 11059864 - 11059787
Alignment:
Q  151 tttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcata 228  Q
    |||| ||||||| | ||| |||| |||||||||||| |  ||||||||| | || |||||||| ||||||||||||||    
T  11059864 tttagggatattaattttcggttgagggatcaaagtgacaattttttacctccactttagtccctgtgacacctcata 11059787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 23704012 - 23703959
Alignment:
Q  58 aagttggtgtttaagtgatgattgattttgaacaaaagagagaattagatgaca 111  Q
    ||||||||||||||  ||  ||| ||||||||||||||||| ||||||||||||    
T  23704012 aagttggtgtttaatggaaaattaattttgaacaaaagagataattagatgaca 23703959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 74 - 325
Target Start/End: Complemental strand, 2591935 - 2591691
Alignment:
Q  74 gatgattgattttgaacaaaagagagaattagatgaca----ggggtttgagatttagtgatttaggaatttgagatt-caatttatggatattgagttt 168  Q
    ||||||||||||||||||||||||||||||||||||||    | | |||||||||||   |||||||||||||||||| ||||||   |||||||| |||    
T  2591935 gatgattgattttgaacaaaagagagaattagatgacatttagagatttgagatttaagaatttaggaatttgagatttcaatttcgagatattgatttt 2591836  T
Q  169 tggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatgtcatgttgtgccacatcatcatcacttagcagaataac 268  Q
    || |||||||| ||||||    |||||||||||||| ||||||||||||||||||||||||| |||             ||||||||||| |||||||||    
T  2591835 tgcttcagggaccaaagtggcaattttttactttcactttagtccatgtgacacctcatatgccat-------------atcatcacttaacagaataac 2591749  T
Q  269 ttaacgtcagagactaaagtgataacagaagtgcatagtca-aaacttatttgtattt 325  Q
    ||||| |||| |||||||||||| |  |||||||| ||||| | |||| |||||||||    
T  2591748 ttaacatcagggactaaagtgatcatggaagtgcagagtcagagacttgtttgtattt 2591691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 82 - 231
Target Start/End: Original strand, 55389291 - 55389444
Alignment:
Q  82 attttgaacaaaagagagaattagatgaca----ggggtttgagatttagtgatttaggaatttgagattcaatttatggatattgagttttggttcagg 177  Q
    ||||||||||||||||||||||||||||||    ||| |||||||||||  ||||||||||||||| |||||||||  | ||||||| ||| ||||||||    
T  55389291 attttgaacaaaagagagaattagatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgggaatattgattttcggttcagg 55389390  T
Q  178 gatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatgt 231  Q
    || |||||| | |||||| |||||||| ||| |||| |||||||||||||||||    
T  55389391 gaccaaagtgaccattttctactttcactttggtccctgtgacacctcatatgt 55389444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 84 - 230
Target Start/End: Original strand, 48809479 - 48809629
Alignment:
Q  84 tttgaacaaaagagagaattagatgaca----ggggtttgagatttagtgatttaggaatttgagattcaatttatggatattgagttttggttcaggga 179  Q
    ||||||||||| ||||||||||||||||    ||| |||||||||||   |||||||||||||| |||||||||| | ||||||| |||||||||| |||    
T  48809479 tttgaacaaaatagagaattagatgacatttagggatttgagatttaagtatttaggaatttgatattcaatttaggaatattgatttttggttcatgga 48809578  T
Q  180 tcaaagtaatcattttttactttcattttagtccatgtgacacctcatatg 230  Q
    ||||||| | |||||| |||||||| |||||||| | ||||||||||||||    
T  48809579 tcaaagtgaccattttctactttcactttagtccttctgacacctcatatg 48809629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 82 - 230
Target Start/End: Complemental strand, 48573286 - 48573134
Alignment:
Q  82 attttgaacaaaagagagaattagatgaca----ggggtttgagatttagtgatttaggaatttgagattcaatttatggatattgagttttggttcagg 177  Q
    |||||||| |||||||||||||||||||||    ||| |||||||||||   |||||||||||||| |||||||||  | ||||||| |||||||||| |    
T  48573286 attttgaataaaagagagaattagatgacatttagggatttgagatttaagaatttaggaatttgatattcaattttggaatattgatttttggttcatg 48573187  T
Q  178 gatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatg 230  Q
    ||||||||| | |||||| |||||||| ||| |||| ||||||||||||||||    
T  48573186 gatcaaagtgaccattttctactttcactttggtccctgtgacacctcatatg 48573134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 64 - 230
Target Start/End: Original strand, 36280121 - 36280291
Alignment:
Q  64 gtgtttaagtgatgattgattttgaacaaaagagagaattagatgaca----ggggtttgagatttagtgatttaggaatttgagattcaatttatggat 159  Q
    ||||||||  || |||| ||||||||||||||||||||||| ||||||    ||| |||||||||||  ||||||||||||||| |||||||||  | ||    
T  36280121 gtgtttaatggaagattaattttgaacaaaagagagaattaaatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgggaat 36280220  T
Q  160 attgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatg 230  Q
    ||||| |||||||| |||||  ||||| | |||||| | |||||||||| |||| ||||||||||||||||    
T  36280221 attgatttttggtttagggactaaagtgaccattttcttctttcattttggtccgtgtgacacctcatatg 36280291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 84 - 325
Target Start/End: Original strand, 53958925 - 53959159
Alignment:
Q  84 tttgaacaaaagagagaattagatgacagg---ggtttgagatttagtgatttaggaatttgagattcaatttatggatattgagttttggttcagggat 180  Q
    ||||||||||||||||||||||||||||     | |||||||||||  ||||||||||||||| |||||||||  | ||||||| |||||||||||||      
T  53958925 tttgaacaaaagagagaattagatgacatttaagatttgagatttaaggatttaggaatttgatattcaatttgggaatattgatttttggttcaggggc 53959024  T
Q  181 caaagtaatcattttttactttcattttagtccatgtgacacctcatatgtcatgttgtgccacatcatcatcacttagcagaataacttaacgtcagag 280  Q
    |||||| |  ||||| |||||||| ||| |||| ||||||| ||||||        || ||||   |||||||||||| || | |   ||||||||||||    
T  53959025 caaagtgacaattttctactttcactttggtccctgtgacagctcata--------tgcgcca---catcatcacttaacaaatttttttaacgtcagag 53959113  T
Q  281 actaaagtgataacagaagtgcatagtca-aaacttatttgtattt 325  Q
    |||||||||||||| |||||||| |||||  |||||||||||||||    
T  53959114 actaaagtgataacggaagtgcagagtcatgaacttatttgtattt 53959159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 64 - 230
Target Start/End: Original strand, 48574263 - 48574433
Alignment:
Q  64 gtgtttaagtgatgattgattttgaacaaaagagagaattagatgacag----gggtttgagatttagtgatttaggaatttgagattcaatttatggat 159  Q
    ||||||||  ||||||||||||||||||||| ||| ||||| ||||||     || ||| |||||||| |||||||  |||||| |||||||||  ||||    
T  48574263 gtgtttaatggatgattgattttgaacaaaaaagataattatatgacatttaaggatttaagatttagggatttagagatttgatattcaatttggggat 48574362  T
Q  160 attgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatg 230  Q
    ||||| |||||||||| |||  ||||| | |||||| |||||||| ||| |||| ||||||||||||||||    
T  48574363 attgaattttggttcaaggactaaagtgaccattttctactttcactttggtccctgtgacacctcatatg 48574433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 64 - 230
Target Start/End: Complemental strand, 17700838 - 17700668
Alignment:
Q  64 gtgtttaagtgatgattgattttgaacaaaagagagaattagatgacag----gggtttgagatttagtgatttaggaatttgagattcaatttatggat 159  Q
    ||||||||  || |||| ||||||||||||| ||||||||| ||||||     || |||||||||||   |||||||||||||| ||||||||| |||||    
T  17700838 gtgtttaatggaagattaattttgaacaaaatagagaattatatgacatttaaggatttgagatttaagaatttaggaatttgatattcaattt-tggat 17700740  T
Q  160 -attgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatg 230  Q
     ||||| |||| ||||||||| |||||| | |||||| |||||||| ||| |||| ||||||||||||||||    
T  17700739 tattgattttttgttcagggaccaaagtgaccattttctactttcactttggtccctgtgacacctcatatg 17700668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 60 - 231
Target Start/End: Complemental strand, 36279267 - 36279100
Alignment:
Q  60 gttggtgtttaagtgatgattgattttgaacaaaagagagaattagatgacaggggtttgag-atttagtgatttaggaatttgagattcaatttatgga 158  Q
    ||||||||||||  || |||||||||||||||||| ||| |||||||||||     ||| || |||||  |||||||| |||||| |||||||||  |||    
T  36279267 gttggtgtttaatggaagattgattttgaacaaaaaagataattagatgact----tttaaggatttaa-gatttagggatttgatattcaatttgggga 36279173  T
Q  159 tattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatgt 231  Q
    ||||   |||||||||||||| |||||| | |||||| |||||||| ||| |||| |||||||||||||||||    
T  36279172 tatttttttttggttcagggaccaaagtgaccattttctactttcactttggtccctgtgacacctcatatgt 36279100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 79 - 219
Target Start/End: Original strand, 36827282 - 36827418
Alignment:
Q  79 ttgattttgaacaaaagagagaattagatgacaggggtttgagatttagtgatttaggaatttgagattcaatttatggatattgagttttggttcaggg 178  Q
    ||||||||||||||||||||||||||| |||||    ||| ||  || | ||||||||||||||| |||||||||  ||||||||| ||| | |||||||    
T  36827282 ttgattttgaacaaaagagagaattagttgaca----tttaaggatttgagatttaggaatttgaaattcaatttggggatattgattttcgattcaggg 36827377  T
Q  179 atcaaagtaatcattttttactttcattttagtccatgtga 219  Q
    | |||| |||||||||| || ||||| |||||||| |||||    
T  36827378 accaaaataatcattttctattttcactttagtccctgtga 36827418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 60 - 230
Target Start/End: Original strand, 52318125 - 52318291
Alignment:
Q  60 gttggtgtttaagtgatgattgattttgaacaaaagagagaattagatgacaggggtttgag-atttagtgatttaggaatttgagattcaatttatgga 158  Q
    ||||||||||||  || |||||||||||||||||| ||| ||||||||||||    ||| || |||||  |||||||| |||||| |||||||||  |||    
T  52318125 gttggtgtttaatggaagattgattttgaacaaaaaagataattagatgaca----tttaaggatttaa-gatttagggatttgatattcaatttgggga 52318219  T
Q  159 tattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatg 230  Q
    |||||  |||||||||| ||| |||||| | |||||| |||||||| ||| | || ||||||||||||||||    
T  52318220 tattgttttttggttcatggaccaaagtgaccattttctactttcactttggaccttgtgacacctcatatg 52318291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 129 - 231
Target Start/End: Complemental strand, 53957923 - 53957821
Alignment:
Q  129 gatttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcata 228  Q
    |||||||| |||||| |||||||||  ||||||||| |||||||||| |||  |||||||||||||| |||||||| ||| ||||  |||||||||||||    
T  53957923 gatttagggatttgacattcaatttggggatattgatttttggttcatggactaaagtaatcattttctactttcactttggtccccgtgacacctcata 53957824  T
Q  229 tgt 231  Q
    |||    
T  53957823 tgt 53957821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 60 - 227
Target Start/End: Complemental strand, 55388384 - 55388211
Alignment:
Q  60 gttggtgtttaagtgatgattgattttgaacaaaagagaga--attagatgacag----gggtttgagatttagtgatttaggaatttgagattcaattt 153  Q
    ||||||||||||  ||  ||||||||||||||||| | |||  |||||||||||     || ||| ||||||||  ||||||| |||||| |||||||||    
T  55388384 gttggtgtttaatagaatattgattttgaacaaaaaaaagataattagatgacatttaaggatttaagatttaggaatttagggatttgatattcaattt 55388285  T
Q  154 atggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcat 227  Q
      ||||||||| |||||||||||||| |||||| | |||||| |||||||| ||| |||| |||||||| ||||    
T  55388284 ggggatattgatttttggttcagggaccaaagtgaccattttctactttcactttggtccctgtgacacatcat 55388211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 129 - 230
Target Start/End: Complemental strand, 48808622 - 48808521
Alignment:
Q  129 gatttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcata 228  Q
    |||||||| |||||| |||||||||  | ||||||| |||||||||||||| |||||| | |||||| |||||||| ||| |||  ||||||||||||||    
T  48808622 gatttagggatttgatattcaatttgggaatattgatttttggttcagggaccaaagtgaccattttctactttcactttggtctctgtgacacctcata 48808523  T
Q  229 tg 230  Q
    ||    
T  48808522 tg 48808521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 237
Target Start/End: Complemental strand, 20464339 - 20464231
Alignment:
Q  129 gatttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcata 228  Q
    |||||||| ||||||| ||||| ||  ||||||||| ||||| |||| ||| |||||| | |||||| ||||||||||||||||  ||||| ||||| ||    
T  20464339 gatttagggatttgaggttcaaattggggatattgatttttgattcatggaccaaagtgaccattttctactttcattttagtctctgtgatacctcgta 20464240  T
Q  229 tgtcatgtt 237  Q
    |||||||||    
T  20464239 tgtcatgtt 20464231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 47428457 - 47428549
Alignment:
Q  130 atttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacac 222  Q
    ||||||| ||||||||||||| ||||| ||||| | ||||||||||||||  ||||| | |||||  |||||||| |||||||||||||||||    
T  47428457 atttagggatttgagattcaagttatgaatattaatttttggttcagggactaaagtgaccatttcctactttcactttagtccatgtgacac 47428549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 222
Target Start/End: Complemental strand, 19114760 - 19114670
Alignment:
Q  131 tttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacac 222  Q
    |||||| ||||||||||||| ||  ||||||||| ||||| ||||||||| ||||| | |||||| |||||||| |||||||| ||||||||    
T  19114760 tttagggatttgagattcaagtt-gggatattgatttttgattcagggattaaagtgaccattttctactttcactttagtccttgtgacac 19114670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 209
Target Start/End: Complemental strand, 33837424 - 33837333
Alignment:
Q  118 tgagatttagtgatttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcatttta 209  Q
    |||||||||| || ||| | |||||| ||||||| |  ||||||||| |||||||||||||| |||||| | |||||| |||||||||||||    
T  33837424 tgagatttagagacttaaggatttgaaattcaatctggggatattgatttttggttcagggaccaaagtgaccattttctactttcatttta 33837333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 217
Target Start/End: Complemental strand, 45599133 - 45599046
Alignment:
Q  130 atttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgt 217  Q
    ||||||| ||||||| ||||| ||| | ||||||| |||||||||||| |  ||||| | |||||| |||||||||||||||||||||    
T  45599133 atttagggatttgagtttcaagttaagaatattgatttttggttcaggaactaaagtgaccattttctactttcattttagtccatgt 45599046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 612457 - 612377
Alignment:
Q  156 ggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatgtcatgt 236  Q
    ||||||||| |||||||||| || | ||| | |||||||| |||||||| |||||||  ||||||||||||| ||||||||    
T  612457 ggatattgatttttggttcatgggttaaattgatcattttctactttcactttagtctctgtgacacctcatgtgtcatgt 612377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 33427972 - 33427888
Alignment:
Q  138 atttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacac 222  Q
    |||| |||||||| ||  ||||||||| |||||||||||||   ||||| || ||||| |||||||| |||||||||||||||||    
T  33427972 atttaagattcaagttggggatattgatttttggttcaggggctaaagtgataattttctactttcactttagtccatgtgacac 33427888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 3693996 - 3694076
Alignment:
Q  132 ttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtc 212  Q
    ||||| ||||||||||||||||  ||| ||| | ||||  ||||||||||||||| | |||||| |||||||| |||||||    
T  3693996 ttagggatttgagattcaatttgaggagattaattttttattcagggatcaaagtgaccattttgtactttcactttagtc 3694076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 33428329 - 33428421
Alignment:
Q  130 atttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacac 222  Q
    ||||||| | ||||||||||| ||   |||||||| |||| ||| |||||  ||||| | |||||||||||||||||||||||  ||||||||    
T  33428329 atttagggaattgagattcaagtttgagatattgattttttgttgagggactaaagtgaccattttttactttcattttagtctttgtgacac 33428421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 111 - 222
Target Start/End: Original strand, 19115022 - 19115133
Alignment:
Q  111 aggggtttgagatttagtgatttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttag 210  Q
    |||| |||||||||||  ||||| || || ||| |||||| ||  ||||||||| |||| ||||| |||  |||||  | ||||| |||||||| |||||    
T  19115022 agggatttgagatttaaggatttggggatatgatattcaaattggggatattgatttttagttcatggactaaagtggttattttctactttcactttag 19115121  T
Q  211 tccatgtgacac 222  Q
    ||||||||||||    
T  19115122 tccatgtgacac 19115133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 111
Target Start/End: Complemental strand, 52317233 - 52317186
Alignment:
Q  64 gtgtttaagtgatgattgattttgaacaaaagagagaattagatgaca 111  Q
    ||||||||  || |||| ||||||||||||||||||||||||||||||    
T  52317233 gtgtttaatggaagattaattttgaacaaaagagagaattagatgaca 52317186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 330
Target Start/End: Original strand, 17701921 - 17701983
Alignment:
Q  269 ttaacgtcagagactaaagtgataacagaagtgcatagtca-aaacttatttgtatttgatct 330  Q
    |||||||||| ||||||||||||||| |||||||| |||||   |||||||||||||| ||||    
T  17701921 ttaacgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatct 17701983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 309
Target Start/End: Complemental strand, 20464212 - 20464150
Alignment:
Q  247 catcatcacttagcagaataacttaacgtcagagactaaagtgataacagaagtgcatagtca 309  Q
    |||||||||||| |||| | | ||||||||   |||||||||||||||||||||||| |||||    
T  20464212 catcatcacttaacagagttatttaacgtcgtggactaaagtgataacagaagtgcagagtca 20464150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 301
Target Start/End: Original strand, 36827455 - 36827509
Alignment:
Q  247 catcatcacttagcagaataacttaacgtcagagactaaagtgataacagaagtg 301  Q
    |||||||||||| || ||| | ||||| |||||||||||||||||||| ||||||    
T  36827455 catcatcacttaacaaaattatttaacatcagagactaaagtgataacggaagtg 36827509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 303
Target Start/End: Original strand, 49261531 - 49261573
Alignment:
Q  261 agaataacttaacgtcagagactaaagtgataacagaagtgca 303  Q
    ||||||| |||||||||||||||||||||||||| ||| ||||    
T  49261531 agaataaattaacgtcagagactaaagtgataacggaaatgca 49261573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 325
Target Start/End: Complemental strand, 36279073 - 36279016
Alignment:
Q  269 ttaacgtcagagactaaagtgataacagaagtgcatagtca-aaacttatttgtattt 325  Q
    |||||||||| ||||||| ||||||| |||||||| ||||| | ||||||||||||||    
T  36279073 ttaacgtcagggactaaaatgataacggaagtgcagagtcagagacttatttgtattt 36279016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 325
Target Start/End: Original strand, 36280319 - 36280376
Alignment:
Q  269 ttaacgtcagagactaaagtgataacagaagtgcatagtca-aaacttatttgtattt 325  Q
    |||||||||| ||||||||||||||| |||||||| ||||| | |||||||| |||||    
T  36280319 ttaacgtcagggactaaagtgataacggaagtgcagagtcagagacttatttatattt 36280376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 222
Target Start/End: Original strand, 47117945 - 47118037
Alignment:
Q  129 gatttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacac 222  Q
    |||||||| ||| ||||||||| ||  ||||||||| ||||||||||||||  ||||| | || ||| || ||||| |||||||| ||||||||    
T  47117945 gatttagggattcgagattcaagttggggatattgatttttggttcagggactaaagtgacca-tttctattttcactttagtccttgtgacac 47118037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 325
Target Start/End: Complemental strand, 55388194 - 55388137
Alignment:
Q  269 ttaacgtcagagactaaagtgataacagaagtgcatagtca-aaacttatttgtattt 325  Q
    |||||||||| ||||||||||||||| | |||||| |||||  |||||||||||||||    
T  55388194 ttaacgtcagggactaaagtgataacgggagtgcagagtcagtaacttatttgtattt 55388137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 11773050 - 11773110
Alignment:
Q  266 aacttaacgtcagagactaaagtgataacagaagtgcatagtca-aaacttatttgtattt 325  Q
    ||||||||| ||| ||||||||||||||| |||||| | ||||| | ||||||||||||||    
T  11773050 aacttaacgccagggactaaagtgataacggaagtgtagagtcagagacttatttgtattt 11773110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 325
Target Start/End: Original strand, 45600925 - 45600997
Alignment:
Q  253 cacttagcagaataacttaacgtcagagactaaagtgataacagaagtgcatagtcaaaacttatttgtattt 325  Q
    |||||| |||||| | ||||||||   ||||||||||||||| |||||||| |||||  |||| |||||||||    
T  45600925 cacttaacagaattatttaacgtcgtggactaaagtgataacggaagtgcagagtcaggacttctttgtattt 45600997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 47075353 - 47075385
Alignment:
Q  269 ttaacgtcagagactaaagtgataacagaagtg 301  Q
    |||||||||||||||||||||||||| ||||||    
T  47075353 ttaacgtcagagactaaagtgataacggaagtg 47075385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 325
Target Start/End: Original strand, 52318296 - 52318376
Alignment:
Q  246 tcatcatcacttagcagaataacttaacgtcagagactaaagtgataacagaagtgcatagtca-aaacttatttgtattt 325  Q
    ||||||||||||| |||| |   |||||||||| ||||||||| ||| |||||||||| |||||   ||||||||||||||    
T  52318296 tcatcatcacttaacagatttttttaacgtcagggactaaagtaatatcagaagtgcagagtcagggacttatttgtattt 52318376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 42)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 64 - 230
Target Start/End: Original strand, 8075638 - 8075807
Alignment:
Q  64 gtgtttaagtgatgattgattttgaacaaaagagagaattagatgacag---gggtttgagatttagtgatttaggaatttgagattcaatttatggata 160  Q
    ||||||||  || |||| ||||||||||||||||||||||||||||||    || |||||||||||| ||| ||||||||||| |||||||||  | |||    
T  8075638 gtgtttaatggaagattaattttgaacaaaagagagaattagatgacatttaggatttgagatttagggatataggaatttgatattcaatttgggaata 8075737  T
Q  161 ttgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatg 230  Q
    |||| |||||||||||||| |||||| ||||||||  ||||||| ||| |||| ||||||||||||||||    
T  8075738 ttgatttttggttcagggaccaaagtgatcattttcgactttcactttggtccttgtgacacctcatatg 8075807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 77 - 325
Target Start/End: Complemental strand, 25590736 - 25590494
Alignment:
Q  77 gattgattttgaacaaaagagagaattagatgacag----gggtttgagatttagtgatttaggaatttgagattcaatttatggatattgagttttggt 172  Q
    |||| ||||||||||||||||||||||||||||||     || |||||||||||  ||||||||||||||| |||||||||  | ||||||| |||||||    
T  25590736 gattaattttgaacaaaagagagaattagatgacatttatggatttgagatttaaggatttaggaatttgatattcaatttgggaatattgatttttggt 25590637  T
Q  173 tcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatgtcatgttgtgccacatcatcatcacttagcagaataacttaa 272  Q
    |||| || |||||| | |||||| |||||||| ||| |||| ||||||||||||||        || ||||   |||||||||||| || |||   ||||    
T  25590636 tcagagaccaaagtgaccattttctactttcactttggtccctgtgacacctcata--------tgcgcca---catcatcacttaacaaaattttttaa 25590548  T
Q  273 cgtcagagactaaagtgataacagaagtgcatagtca-aaacttatttgtattt 325  Q
    ||||||||| ||||||||||||||||||||| | ||| | ||||||||||||||    
T  25590547 cgtcagagattaaagtgataacagaagtgcagaatcagagacttatttgtattt 25590494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 60 - 230
Target Start/End: Original strand, 40612459 - 40612633
Alignment:
Q  60 gttggtgtttaagtgatgattgattttgaacaaaagagagaattagatga----caggggtttgagatttagtgatttaggaatttgagattcaatttat 155  Q
    ||||||||||||  || |||||||||||||||||||||| ||||||||||     |||| ||| |||||||| |||||||| |||||  |||||||||      
T  40612459 gttggtgtttaatggaagattgattttgaacaaaagagataattagatgatatttagggatttaagatttagggatttagggatttgttattcaatttgg 40612558  T
Q  156 ggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatg 230  Q
    | ||||||| |||||||||||||| |||||||| |||||| |||||||| ||| |||| ||||||||||||||||    
T  40612559 gcatattgatttttggttcagggaccaaagtaaccattttctactttcactttggtccttgtgacacctcatatg 40612633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 77 - 230
Target Start/End: Complemental strand, 40611566 - 40611409
Alignment:
Q  77 gattgattttgaacaaaagagagaattagatgaca----ggggtttgagatttagtgatttaggaatttgagattcaatttatggatattgagttttggt 172  Q
    |||| ||||||||||||||||||||||| ||||||    ||| |||||||||||  ||||||||||||||| |||||||||  | ||||||| |||||||    
T  40611566 gattaattttgaacaaaagagagaattatatgacatttagggatttgagatttaaggatttaggaatttgatattcaatttgggaatattgatttttggt 40611467  T
Q  173 tcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatg 230  Q
    ||||||| | |||| | |||||| |||||||| ||| |||| ||||||||||||||||    
T  40611466 tcagggacccaagtgaccattttctactttcactttggtccctgtgacacctcatatg 40611409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 64 - 231
Target Start/End: Complemental strand, 32640607 - 32640436
Alignment:
Q  64 gtgtttaagtgatgattgattttgaacaaaagagagaattagatgaca----ggggtttgagatttagtgatttaggaatttgagattcaatttatggat 159  Q
    ||||||||  || |||| |||||||| |||||||||||||||||||||    ||| |||||||||||  ||||||||||||||| |||||||||  | ||    
T  32640607 gtgtttaatggaagattaattttgaataaaagagagaattagatgacatttagggatttgagatttaaggatttaggaatttgatattcaattttggaat 32640508  T
Q  160 attgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatgt 231  Q
    ||||| |||||||||| ||| |||||| | |||||| |||||||| ||| |||| |||||||||| ||||||    
T  32640507 attgatttttggttcaaggaccaaagtgaccattttctactttcactttggtccctgtgacaccttatatgt 32640436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 60 - 230
Target Start/End: Complemental strand, 2464992 - 2464818
Alignment:
Q  60 gttggtgtttaagtgatgattgattttgaacaaaagagagaattagatgacag----gggtttgagatttagtgatttaggaatttgagattcaatttat 155  Q
    ||||||||||||  || |||||| ||||||||||| ||| ||||||||||||     || ||| |||||||  |||||||| |||||| |||||||||      
T  2464992 gttggtgtttaatggaagattgactttgaacaaaaaagataattagatgacatttaaggatttaagatttaaggatttagggatttgatattcaatttgg 2464893  T
Q  156 ggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatg 230  Q
    ||||||||| |||||||||||||| |||||| | |||||| |||||||| ||| |||| ||||||||||||||||    
T  2464892 ggatattgatttttggttcagggaccaaagtgaccattttctactttcactttggtccctgtgacacctcatatg 2464818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 129 - 227
Target Start/End: Original strand, 578625 - 578723
Alignment:
Q  129 gatttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcat 227  Q
    ||||||| ||| |||||||||||||| ||||||||| ||| |||||||||| |||||| |||||| ||||||||||||||||||||||| |||||||||    
T  578625 gatttagaaatctgagattcaatttagggatattgattttcggttcagggaccaaagtgatcattctttactttcattttagtccatgtcacacctcat 578723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 82 - 230
Target Start/End: Original strand, 2466595 - 2466747
Alignment:
Q  82 attttgaacaaaagagagaattagatgaca----ggggtttgagatttagtgatttaggaatttgagattcaatttatggatattgagttttggttcagg 177  Q
    ||||||||||||| ||||||||||||||||    ||| |||||||||||  |||||| |||||||| |||||||||  | ||||||| ||||||||||||    
T  2466595 attttgaacaaaaaagagaattagatgacatttagggatttgagatttaaggatttaagaatttgatattcaatttgggaatattgaattttggttcagg 2466694  T
Q  178 gatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatg 230  Q
    || |||| | |  ||||| |||||||| ||| ||||||| |||||||||||||    
T  2466695 gaccaaaatgactattttctactttcactttggtccatgggacacctcatatg 2466747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 36 - 230
Target Start/End: Complemental strand, 9537382 - 9537191
Alignment:
Q  36 gcacagtcaaggatttaaaatgaagttggtgtttaa-gtgatgattgattttgaacaaaagagagaattagatgacaggggtttgagatttagtgattta 134  Q
    |||||||||||||  ||| |  |||||||||||||| | || |||||| ||||||||||||||||||||||||||||    |||  |  ||   ||||||    
T  9537382 gcacagtcaaggacctaatagtaagttggtgtttaatgggaagattgactttgaacaaaagagagaattagatgaca----tttatggattttagattta 9537287  T
Q  135 ggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatg 230  Q
    || ||||||||||||||||  ||||||||| ||||| ||||||||||||||| |  ||||| |||||||| |||||||  |||||||| |||||||    
T  9537286 gggatttgagattcaatttggggatattgatttttgattcagggatcaaagtgactattttctactttcactttagtcactgtgacacatcatatg 9537191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 64 - 230
Target Start/End: Original strand, 28590916 - 28591087
Alignment:
Q  64 gtgtttaagtgatgattgattttgaacaaaagagagaattagatgaca----ggggtttgagatttagtgatttaggaatttgagattcaatttatggat 159  Q
    ||||||||  || |||| ||||||||||||| ||||||||| ||||||    ||| |||||||||||  |||||| |||||||| |||||||||  | ||    
T  28590916 gtgtttaatggaagattaattttgaacaaaaaagagaattatatgacatttagggatttgagatttaaggatttaagaatttgatattcaatttgggaat 28591015  T
Q  160 attgagtttt-ggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatg 230  Q
    ||||| |||| |||||||||| |||||| | |||||| |||||||| ||| |||| ||||||||||||||||    
T  28591016 attgattttttggttcagggaccaaagtgaccattttctactttcactttggtccctgtgacacctcatatg 28591087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 60 - 230
Target Start/End: Complemental strand, 8074773 - 8074599
Alignment:
Q  60 gttggtgtttaagtgatgattgattttgaacaaaagagagaattagatgacagg----ggtttgagatttagtgatttaggaatttgagattcaatttat 155  Q
    ||||||||||||   | ||||||||||||||| |||||| ||||||||||||      | ||| |||||||| ||||| || |||||| |||||||||      
T  8074773 gttggtgtttaatgtaagattgattttgaacagaagagataattagatgacatttaaagatttaagatttagggatttggggatttgatattcaatttgg 8074674  T
Q  156 ggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatg 230  Q
    | ||||||| |||||||||||||| |||||| | |||||| |||||||| ||| || | ||||||||||||||||    
T  8074673 gcatattgatttttggttcagggaccaaagtgaccattttctactttcactttggtacctgtgacacctcatatg 8074599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 230
Target Start/End: Original strand, 32641600 - 32641700
Alignment:
Q  129 gatttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcata 228  Q
    |||||||| |||| | |||||||||  ||||||||| |||||||| |||||||||||||| ||||||||||||||| ||| |||| ||||| ||||||||    
T  32641600 gatttagggatttcatattcaatttggggatattgatttttggttgagggatcaaagtaaccattttttactttca-tttggtccctgtgatacctcata 32641698  T
Q  229 tg 230  Q
    ||    
T  32641699 tg 32641700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 61 - 230
Target Start/End: Complemental strand, 14890091 - 14889918
Alignment:
Q  61 ttggtgtttaagtgatgattgattttgaacaaaagagagaattagatgacag----gggtttgagatttagtgatttaggaatttgagattcaatttatg 156  Q
    |||||||||||  || |||||||||||||||||||| | || |||||||||     || ||| |||||||| |||||||  | |||| |||||||||  |    
T  14890091 ttggtgtttaatggaagattgattttgaacaaaagaaataactagatgacatttaaggatttaagatttagggatttagcgaattgatattcaatttggg 14889992  T
Q  157 gatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatg 230  Q
     ||||||| |||||||||||||| |||||| | |||||| |||||| | ||| |||| | ||||||||||||||    
T  14889991 catattgatttttggttcagggaccaaagtgaccattttctacttttactttggtccctatgacacctcatatg 14889918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 121 - 224
Target Start/End: Complemental strand, 34173538 - 34173435
Alignment:
Q  121 gatttagtgatttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgac 220  Q
    ||||||| |||||||  |||||| |||||||||  ||||||||| ||||||||||| || |||||| |||||||| |||||||| |||||||| |||||     
T  34173538 gatttagggatttagtgatttgaaattcaatttggggatattgatttttggttcagagaccaaagtgatcattttctactttcagtttagtccctgtgat 34173439  T
Q  221 acct 224  Q
    ||||    
T  34173438 acct 34173435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 129 - 226
Target Start/End: Complemental strand, 18004908 - 18004811
Alignment:
Q  129 gatttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctca 226  Q
    |||||||| |||||| |||||||||  ||||||||| ||||| |||||||| |||||| |  ||||| ||||||||||||||||  ||||||||||||    
T  18004908 gatttagggatttgatattcaatttggggatattgaattttgattcagggaccaaagtgactattttctactttcattttagtctctgtgacacctca 18004811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 230
Target Start/End: Original strand, 14891013 - 14891121
Alignment:
Q  122 atttagtgatttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgaca 221  Q
    |||||| ||||||||||||||| |||||||||  | ||||||| ||||| ||||||||  ||||| | |||||| |||| ||| ||| |||| |||||||    
T  14891013 atttagggatttaggaatttgaaattcaatttgggaatattgatttttgattcagggactaaagtgaccattttctactatcactttggtccttgtgaca 14891112  T
Q  222 cctcatatg 230  Q
    |||||||||    
T  14891113 cctcatatg 14891121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 230
Target Start/End: Complemental strand, 544911 - 544797
Alignment:
Q  116 tttgagatttagtgatttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccat 215  Q
    |||||||||||| ||||||||||||||| |||||||||  | ||||||| |||||||||||| | | || | |  ||||| |||||||| |||  ||| |    
T  544911 tttgagatttagggatttaggaatttgatattcaatttgggaatattgatttttggttcaggaacccaaatgactattttctactttcactttgatccct 544812  T
Q  216 gtgacacctcatatg 230  Q
    |||||||||||||||    
T  544811 gtgacacctcatatg 544797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 64 - 230
Target Start/End: Original strand, 545848 - 546010
Alignment:
Q  64 gtgtttaagtgatgattgattttgaacaaaagagagaattagatgacaggggtttga-gatttagtgatttaggaatttgagattcaatttatggatatt 162  Q
    ||||||||  || ||||||||  |||||||||||| ||||||||||||    ||| | ||||||  |||||||| |||||  |||||||||  | |||||    
T  545848 gtgtttaatggaagattgattcagaacaaaagagataattagatgaca----tttaacgatttaa-gatttagggatttgttattcaatttgggcatatt 545942  T
Q  163 gagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatg 230  Q
    || |||||||||| ||| |||||| |  ||||| |||||||| ||| |||| ||||||||||||||||    
T  545943 gatttttggttcaaggaccaaagtgactattttctactttcactttggtccttgtgacacctcatatg 546010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 60 - 330
Target Start/End: Complemental strand, 4593177 - 4592920
Alignment:
Q  60 gttggtgtttaagtgatgattgattttgaacaaaagagagaattagatgacaggggtttgagatttagtgatttaggaatttgagatt--caatttatgg 157  Q
    ||||||||||||   | |||||||||||||||||||||| ||||||||||||    ||| ||| ||   |||||||| ||||   |||  ||||||  |     
T  4593177 gttggtgtttaatgaaagattgattttgaacaaaagagataattagatgaca----tttaagaatttaagatttagggattttttattttcaatttgggc 4593082  T
Q  158 atattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatgtcatgttgtgccacatcatcatcactt 257  Q
    ||||||| |||||||||||||| |||||| | |||||| |||||||| ||| |||| |||| |||||||||||         ||||||||||||   |||    
T  4593081 atattgatttttggttcagggaccaaagtgaccattttctactttcactttggtccctgtg-cacctcatatgc--------gccacatcatca---ctt 4592994  T
Q  258 agcagaataacttaacgtcagagactaaagtgataacagaagtgcatagtca-aaacttatttgtatttgatct 330  Q
    | |||| |   |||||||||| ||||||||||||||| |||||||| |||||   |||||||||||||| ||||    
T  4592993 aacagatttttttaacgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatct 4592920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 16611865 - 16611813
Alignment:
Q  253 cacttagcagaataacttaacgtcagagactaaagtgataacagaagtgcata 305  Q
    |||||| |||||| | |||||||||||||||||||||||||| ||||||||||    
T  16611865 cacttaacagaattatttaacgtcagagactaaagtgataacggaagtgcata 16611813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 12445284 - 12445363
Alignment:
Q  143 agattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacac 222  Q
    ||||| ||||||  |||||||| |||| ||||||| ||| |||| |||||||| |||||| | |||||||||||||||||    
T  12445284 agatttaatttagagatattgattttttgttcaggtatcgaagtgatcattttctacttttactttagtccatgtgacac 12445363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 294
Target Start/End: Complemental strand, 16979135 - 16979088
Alignment:
Q  247 catcatcacttagcagaataacttaacgtcagagactaaagtgataac 294  Q
    |||||||||||| |||||||||||||||| |||||||||| |||||||    
T  16979135 catcatcacttaacagaataacttaacgttagagactaaaatgataac 16979088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 230
Target Start/End: Complemental strand, 28589955 - 28589848
Alignment:
Q  123 tttagtgatttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacac 222  Q
    ||||| |||||||  |||||| |||||||||  | ||||||| |||||||||||||| |||||| | |||||| |||||| | ||| |||| | |||| |    
T  28589955 tttagagatttagtgatttgatattcaattttggtatattgatttttggttcagggaccaaagtgaccattttctacttttactttggtccctatgaccc 28589856  T
Q  223 ctcatatg 230  Q
    ||||||||    
T  28589855 ctcatatg 28589848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 2314386 - 2314444
Alignment:
Q  128 tgatttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagt 186  Q
    |||||||||||||||| |||||||||  ||||||| | |||||||||||||| ||||||    
T  2314386 tgatttaggaatttgatattcaatttggggatattaaattttggttcagggaccaaagt 2314444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 149
Target Start/End: Original strand, 9537853 - 9537948
Alignment:
Q  58 aagttggtgtttaagtgatgattgattttgaacaaaagagagaattagatgac----aggggtttgagatttagtgatttaggaatttgagattca 149  Q
    |||||| |||||||  || ||||||||||||||||| ||||||||||||| ||    |||  |||||||||||| |||||||| | ||||||||||    
T  9537853 aagttgatgtttaatggaagattgattttgaacaaaggagagaattagataacatttaggaatttgagatttagggatttagggaattgagattca 9537948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 234
Target Start/End: Original strand, 9537945 - 9538007
Alignment:
Q  172 ttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatgtcat 234  Q
    |||||||| |||||| | |||||| |||||||| |||||||||||||| || |||||||||||    
T  9537945 ttcagggaccaaagtgaccattttatactttcactttagtccatgtgaaacatcatatgtcat 9538007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 13651041 - 13651106
Alignment:
Q  156 ggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgaca 221  Q
    ||||||||| ||| ||||||||||  ||||| | ||||||||||||||| |||||||| |||||||    
T  13651041 ggatattgattttcggttcagggactaaagtgaccattttttactttcactttagtccctgtgaca 13651106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 227
Target Start/End: Complemental strand, 37072799 - 37072730
Alignment:
Q  158 atattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcat 227  Q
    ||||||| ||| ||||||||||  ||||| |  ||||| |||||||||||| ||||||||||||||||||    
T  37072799 atattgattttcggttcagggactaaagtgactattttctactttcattttggtccatgtgacacctcat 37072730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 16611931 - 16611875
Alignment:
Q  156 ggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtc 212  Q
    ||||||||| ||||||||||||||| ||||| |||||||| ||| |||| |||||||    
T  16611931 ggatattgatttttggttcagggattaaagtgatcattttctacattcactttagtc 16611875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 19183184 - 19183112
Alignment:
Q  156 ggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcata 228  Q
    ||||||||| ||| | ||||| || |||||| | ||||||||||||||| |||||||||| |||||| |||||    
T  19183184 ggatattgattttcgattcagagagcaaagtcaccattttttactttcactttagtccatatgacacgtcata 19183112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 155 - 214
Target Start/End: Original strand, 31946932 - 31946991
Alignment:
Q  155 tggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtcca 214  Q
    |||||||||| ||| | |||||||| |||||| | ||||||||||||||| |||||||||    
T  31946932 tggatattgattttcgattcagggaccaaagtgaccattttttactttcactttagtcca 31946991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 269 - 300
Target Start/End: Complemental strand, 32640409 - 32640378
Alignment:
Q  269 ttaacgtcagagactaaagtgataacagaagt 300  Q
    ||||||||||||||||||||||||||||||||    
T  32640409 ttaacgtcagagactaaagtgataacagaagt 32640378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 111
Target Start/End: Original strand, 32641543 - 32641594
Alignment:
Q  60 gttggtgtttaagtgatgattgattttgaacaaaagagagaattagatgaca 111  Q
    ||||||||||||  || |||||||||||||||||| ||| ||||||||||||    
T  32641543 gttggtgtttaatggaagattgattttgaacaaaaaagataattagatgaca 32641594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 325
Target Start/End: Complemental strand, 9537172 - 9537087
Alignment:
Q  237 tgtgccacatcatcatcacttagcagaataacttaacgtcagagactaaagtgataacagaagtgcatagtcaaaacttatttgtattt 325  Q
    |||||||||||||||   |||| || ||| | |||||||||| ||||||||||||||  |||||||| |||||  |||| |||||||||    
T  9537172 tgtgccacatcatca---cttaccataattatttaacgtcagtgactaaagtgataatggaagtgcacagtcatgacttctttgtattt 9537087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 236
Target Start/End: Complemental strand, 18400439 - 18400341
Alignment:
Q  138 atttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatgtcatgt 236  Q
    |||||||||| || ||  ||||||||  ||||| || ||| || |||||  ||||||| |||||||  |||| |||||||||||||| |||||||||||    
T  18400439 atttgagatttaagttggggatattgttttttgatttaggaattaaagtggtcattttctactttcgctttactccatgtgacacctgatatgtcatgt 18400341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 228
Target Start/End: Complemental strand, 21069557 - 21069460
Alignment:
Q  130 atttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcata 228  Q
    ||||||| ||||||||||||| ||  | ||||||| |||  |||||||||||||| | | |||||| |||||||| |||| ||||| |||||| |||||    
T  21069557 atttagggatttgagattcaagttgagaatattgattttcagttcagggatcaaa-tgaccattttctactttcactttaatccatatgacacgtcata 21069460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 330
Target Start/End: Original strand, 32641728 - 32641790
Alignment:
Q  269 ttaacgtcagagactaaagtgataacagaagtgcatagtca-aaacttatttgtatttgatct 330  Q
    |||||||||| || |||||||||||| |||||||| |||||  ||||||||||||||| ||||    
T  32641728 ttaacgtcagggattaaagtgataacggaagtgcagagtcagcaacttatttgtatttaatct 32641790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 310
Target Start/End: Original strand, 546038 - 546079
Alignment:
Q  269 ttaacgtcagagactaaagtgataacagaagtgcatagtcaa 310  Q
    |||||||||| ||||||||||||||| |||||||| ||||||    
T  546038 ttaacgtcagggactaaagtgataacggaagtgcagagtcaa 546079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 228
Target Start/End: Original strand, 32555461 - 32555498
Alignment:
Q  191 attttttactttcattttagtccatgtgacacctcata 228  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  32555461 attttctactttcactttagtccatgtgacacctcata 32555498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 14891149 - 14891181
Alignment:
Q  269 ttaacgtcagagactaaagtgataacagaagtg 301  Q
    |||||||||||||||||||||||||| ||||||    
T  14891149 ttaacgtcagagactaaagtgataacggaagtg 14891181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 309
Target Start/End: Complemental strand, 18004759 - 18004719
Alignment:
Q  269 ttaacgtcagagactaaagtgataacagaagtgcatagtca 309  Q
    ||||| |||||||||||||||||||| |||||||| |||||    
T  18004759 ttaacatcagagactaaagtgataacggaagtgcagagtca 18004719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 27720765 - 27720733
Alignment:
Q  77 gattgattttgaacaaaagagagaattagatga 109  Q
    |||||||||||||||||||||||||||| ||||    
T  27720765 gattgattttgaacaaaagagagaattatatga 27720733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 78 - 236
Target Start/End: Original strand, 5737831 - 5737983
Alignment:
Q  78 attgattttgaacaaaagagagaattagatgacaggggtttgagatttagtgatttaggaatttgagattcaatttatggatattgagttttggttcagg 177  Q
    ||||||||||||||||||||| ||||||||||||     || |||||| | |||||||| ||||||||||||||||  ||||||||| ||||| || ||     
T  5737831 attgattttgaacaaaagagataattagatgaca-----tttagattt-gagatttagggatttgagattcaatttggggatattgatttttgatttaga 5737924  T
Q  178 gatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatgtcatgt 236  Q
    || |||||| | ||||||||||||| | |||||||||||||||||||||||||||||||    
T  5737925 gaccaaagtgaccattttttacttttactttagtccatgtgacacctcatatgtcatgt 5737983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 60 - 325
Target Start/End: Original strand, 32898245 - 32898504
Alignment:
Q  60 gttggtgtttaagtgatgattgattttgaacaaaagagagaattagatgacag----gggtttgagatttagtgatttaggaatttgagattcaatttat 155  Q
    ||||||||||||  || ||||||| |||||||||| ||| ||||||||||||     || ||| | |||||| |||||||| |||||| |||||||||      
T  32898245 gttggtgtttaatggaagattgatattgaacaaaaaagataattagatgacatttaaggatttaaaatttagggatttagggatttgatattcaatttga 32898344  T
Q  156 ggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatgtcatgttgtgccacatcatcatcac 255  Q
    ||||||||| |||||||||||||| |||||| | |||||| |||||||| ||| |||| ||||||||||||||        || ||||   |||||||||    
T  32898345 ggatattgatttttggttcagggaccaaagtgaccattttctactttcactttggtccttgtgacacctcata--------tgcgcca---catcatcac 32898433  T
Q  256 ttagcagaataacttaacgtcagagactaaagtgataacagaagtgcatagtca-aaacttatttgtattt 325  Q
    ||| |||| |   |||||||||| ||||||||||||||| |||||||| |||||   ||||||||||||||    
T  32898434 ttaacagatttttttaacgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtattt 32898504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 58 - 236
Target Start/End: Complemental strand, 5737187 - 5737005
Alignment:
Q  58 aagttggtgtttaagtgatgattgattttgaacaaaagagagaattagatgac----aggggtttgagatttagtgatttaggaatttgagattcaattt 153  Q
    ||||||||||||||  || |||| |||||||| ||||| ||||||||||||||    |||| ||| |||||||| |||||| | ||||||||||||||||    
T  5737187 aagttggtgtttaatggaagattaattttgaaaaaaagggagaattagatgacatttagggatttcagatttagagatttaaggatttgagattcaattt 5737088  T
Q  154 atggata-ttgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatgtcatgt 236  Q
      ||||| |||| |||||| ||||||| |||||| || | ||| |||||| | |||||||| ||||||||||||||||||||||    
T  5737087 ggggatatttgatttttggatcagggaccaaagtgat-aatttctacttttactttagtccttgtgacacctcatatgtcatgt 5737005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 77 - 236
Target Start/End: Original strand, 28619349 - 28619512
Alignment:
Q  77 gattgattttgaacaaaagagagaattagatgaca----ggggtttgagatttagtgatttaggaatttgagattcaatttatggatattgagttttggt 172  Q
    |||||||||| || |||| ||||||||||||||||    ||  ||||  |||||| |||||||| |||||| |||||||||  ||||||||| |||||||    
T  28619349 gattgatttttaataaaaaagagaattagatgacatttaggaatttgcaatttagggatttagggatttgaaattcaatttggggatattgatttttggt 28619448  T
Q  173 tcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatgtcatgt 236  Q
    ||| |||| ||||| |||||||| |||||||  ||||||||||||||||| | |||||||||||    
T  28619449 tcatggattaaagtgatcattttctactttcgatttagtccatgtgacacattatatgtcatgt 28619512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 60 - 323
Target Start/End: Original strand, 1952778 - 1953027
Alignment:
Q  60 gttggtgtttaagtgatgattgattttgaacaaaagagagaattagatgacaggggtttgag-atttagtgatttaggaatttgagattcaatttatgga 158  Q
    |||| |||||||  || |||||||||||||||||||||| ||||||||||||    ||| || |||||  |||||||| |||||| |||||||||  | |    
T  1952778 gttgttgtttaatggaagattgattttgaacaaaagagataattagatgaca----tttaaggatttaa-gatttagggatttgatattcaatttgggca 1952872  T
Q  159 tattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatgtcatgttgtgccacatcatcatcactta 258  Q
    |||||| |||||||||||||| |||||| | |||||| |||||||| ||| |||| | ||||||||||||        || ||||   ||||||||||||    
T  1952873 tattgatttttggttcagggaccaaagtgaccattttctactttcactttggtccctatgacacctcata--------tgcgcca---catcatcactta 1952961  T
Q  259 gcagaataacttaacgtcagagactaaagtgataacagaagtgcatagtca-aaacttatttgtat 323  Q
     |||| | | |||||||||||||||||||||||||| ||||| || ||||| | ||||||||||||    
T  1952962 acagatttatttaacgtcagagactaaagtgataacggaagtacagagtcatagacttatttgtat 1953027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 138 - 227
Target Start/End: Complemental strand, 8569649 - 8569560
Alignment:
Q  138 atttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcat 227  Q
    |||||||||||||||| |||||||||| |||| |||||||||||||| | || ||||||| |||||||||||||||||||||||||||||    
T  8569649 atttgagattcaatttgtggatattgatttttagttcagggatcaaaatgataattttttcctttcattttagtccatgtgacacctcat 8569560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 64 - 230
Target Start/End: Original strand, 35178609 - 35178779
Alignment:
Q  64 gtgtttaagtgatgattgattttgaacaaaagagagaattagatgaca----ggggtttgagatttagtgatttaggaatttgagattcaatttatggat 159  Q
    ||||||||  || |||| ||||||||||||||||||||||||||||||    ||| ||| |||||||  |||||| |||||||| |||||||||  | ||    
T  35178609 gtgtttaatggaagattaattttgaacaaaagagagaattagatgacatttagggattttagatttaaggatttaagaatttgatattcaatttgggaat 35178708  T
Q  160 attgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatg 230  Q
    ||||| |||||||||||||  |||||| |||||||| || ||||| ||| |||| | ||||||||||||||    
T  35178709 attgatttttggttcaggggccaaagtgatcattttctagtttcactttggtccctatgacacctcatatg 35178779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 325
Target Start/End: Original strand, 5965198 - 5965501
Alignment:
Q  36 gcacagtcaaggatttaaaatgaagttggtgtttaagtgatgattgattttgaacaaaagagagaattagatgac----aggggtttgagatttagtgat 131  Q
    ||||||||| ||| |||| |  ||||||||||||||  || |||||||||||||||||||||| |||||||||||    |||| ||| ||||||||  ||    
T  5965198 gcacagtcatggacttaacactaagttggtgtttaatggaagattgattttgaacaaaagagataattagatgacacttagggatttaagatttaggaat 5965297  T
Q  132 ttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatgt 231  Q
    ||||  |||||| ||||||||| |||||||||| ||||  ||||  || |||| | |  ||||| |||||||| |||| ||  |||||||| ||| ||||    
T  5965298 ttagagatttgaaattcaatttgtggatattgatttttacttcatagaccaaaatgacaattttctactttcactttactctttgtgacacatcaaatgt 5965397  T
Q  232 catg---ttgtgccacat------catcatcacttagcagaataacttaacgtcagagactaaagtgataacagaagtgcatagtcaaa-acttatttgt 321  Q
    ||||   | ||   ||||      |||||| ||||| || ||| | |||||||||||||||||||||||||| |||||||| ||||||| |||| |||||    
T  5965398 catgtcatcgtataacatgtatcacatcattacttaacataatcatttaacgtcagagactaaagtgataacggaagtgcagagtcaaagacttctttgt 5965497  T
Q  322 attt 325  Q
    ||||    
T  5965498 attt 5965501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 60 - 230
Target Start/End: Original strand, 10407384 - 10407558
Alignment:
Q  60 gttggtgtttaagtgatgattgattttgaacaaaagagagaattagatgac----aggggtttgagatttagtgatttaggaatttgagattcaatttat 155  Q
    ||||||||||||  || |||||||||||||||||||||| |||||||||||    | || ||| || ||||| ||||||  | ||||| |||||||||      
T  10407384 gttggtgtttaatggaagattgattttgaacaaaagagataattagatgacatttaaggatttaagctttagggatttaacactttgatattcaatttgg 10407483  T
Q  156 ggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatg 230  Q
    | ||||||| ||||||||||| ||  ||||||| |||||| |||||||| ||| |||| | ||||||||||||||    
T  10407484 gcatattgatttttggttcagagactaaagtaaccattttctactttcactttggtccttatgacacctcatatg 10407558  T

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Target: chr8; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 77 - 325
Target Start/End: Complemental strand, 35177700 - 35177459
Alignment:
Q  77 gattgattttgaacaaaagagagaattagatgacag----gggtttgagatttagtgatttaggaatttgagattcaatttatggatattgagttttggt 172  Q
    |||||||||||||||||| ||| |||||| |||||     || ||| ||||||||  ||||||| |||||| |||||||||  ||||| ||| |||||||    
T  35177700 gattgattttgaacaaaaaagataattaggtgacatttaaggatttaagatttaggaatttagggatttgatattcaatttggggatactgatttttggt 35177601  T
Q  173 tcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatgtcatgttgtgccacatcatcatcacttagcagaataacttaa 272  Q
    ||||||| |||||||| |||||| |||||||| ||| |||| |||||||   |||||       || ||||   |||||||||||| |||| ||  ||||    
T  35177600 tcagggaccaaagtaaccattttctactttcactttggtccttgtgaca---catat------atgcgcca---catcatcacttaacagattattttaa 35177513  T
Q  273 cgtcagagactaaagtgataacagaagtgcatagtca-aaacttatttgtattt 325  Q
    |||||| ||||||||||||||| |||||||| |||||   ||||||||||||||    
T  35177512 cgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtattt 35177459  T

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Target: chr8; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 130 - 231
Target Start/End: Original strand, 41122616 - 41122717
Alignment:
Q  130 atttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatat 229  Q
    ||||||||||||||||||||||||   |||||||| ||||||||||||||||||||| |  ||||| || ||||| ||||||| ||||||||| ||||||    
T  41122616 atttaggaatttgagattcaatttggagatattgatttttggttcagggatcaaagtgacgattttctattttcactttagtcaatgtgacacttcatat 41122715  T
Q  230 gt 231  Q
    ||    
T  41122716 gt 41122717  T

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Target: chr8; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 116 - 236
Target Start/End: Original strand, 32564349 - 32564469
Alignment:
Q  116 tttgagatttagtgatttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccat 215  Q
    |||||||||||| |||||||||||||||||||||||    ||||||| | |||||||  |||||  ||| | |||||||| |||| ||| ||||||||||    
T  32564349 tttgagatttagggatttaggaatttgagattcaatacggggatattcatttttggtcaagggactaaaatgatcattttctactatcactttagtccat 32564448  T
Q  216 gtgacacctcatatgtcatgt 236  Q
    ||||||| ||||||| |||||    
T  32564449 gtgacacatcatatggcatgt 32564469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 230
Target Start/End: Complemental strand, 10406510 - 10406355
Alignment:
Q  64 gtgtttaagtgatgattgattttgaacaaaagagagaattagatgacaggggtttgagatttagtgatttaggaatttgagattcaatttatggatattg 163  Q
    ||||||||  || |||| ||||||||||||||||||||||||||||||           ||||| ||||||||||||||| |||||||||    ||||||    
T  10406510 gtgtttaatagaagattaattttgaacaaaagagagaattagatgaca-----------tttagggatttaggaatttgatattcaatttggaaatattg 10406422  T
Q  164 agttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatg 230  Q
    | ||||||||||| || |||||| |  ||||| |||| ||| ||| |||| ||||||||||||||||    
T  10406421 atttttggttcagagaccaaagtgactattttctactatcactttggtccctgtgacacctcatatg 10406355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 129 - 228
Target Start/End: Original strand, 39138517 - 39138616
Alignment:
Q  129 gatttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcata 228  Q
    |||||||| |||||||||||||||   ||||||||| ||| ||| || | |||||||| | |||||| |||||||| |||||||| ||||||||||||||    
T  39138517 gatttagggatttgagattcaattcggggatattgattttcggtacaagaatcaaagtgaccattttctactttcactttagtccttgtgacacctcata 39138616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 138 - 236
Target Start/End: Complemental strand, 41121366 - 41121268
Alignment:
Q  138 atttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatgtcatgt 236  Q
    |||||| |||||||||  ||||||||| |||||||||| ||| |||||| |  ||||| |||||||| ||||| || ||| ||||||||||| ||||||    
T  41121366 atttgaaattcaatttggggatattgatttttggttcaaggaccaaagtgacaattttctactttcactttagcccttgttacacctcatatatcatgt 41121268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 325
Target Start/End: Complemental strand, 45476305 - 45476226
Alignment:
Q  247 catcatcacttagcagaataacttaacgtcagagactaaagtgataacagaagtgcatagtca-aaacttatttgtattt 325  Q
    |||||||||||| |||| |   ||||||  ||||||||||||||||||||||||||| ||||| | ||||||||||||||    
T  45476305 catcatcacttaacagatttttttaacgggagagactaaagtgataacagaagtgcagagtcagagacttatttgtattt 45476226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 12637656 - 12637713
Alignment:
Q  171 gttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcata 228  Q
    ||||||||| |||||| ||||| || |||||||| ||||||||||||||||| |||||    
T  12637656 gttcagggaccaaagtgatcatattctactttcactttagtccatgtgacacatcata 12637713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 5738003 - 5738087
Alignment:
Q  247 catcatcacttagcagaataacttaacgtcagagactaaagtgataacagaagtgcatagtcaa-aacttatttgtatttgatct 330  Q
    |||||||||||| |||||| | |||||| || ||||| |||||||||| ||||| || |||||| ||||| ||||||||| ||||    
T  5738003 catcatcacttaacagaattatttaacgccaaagactgaagtgataacggaagtacagagtcaataacttctttgtatttaatct 5738087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 9626341 - 9626413
Alignment:
Q  156 ggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcata 228  Q
    ||||||| | ||| ||||||||||| |||||  ||| ||| |||||||| |||||| ||||||||||||||||    
T  9626341 ggatattaattttcggttcagggattaaagtggtcaatttctactttcactttagttcatgtgacacctcata 9626413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 109
Target Start/End: Original strand, 32564279 - 32564330
Alignment:
Q  58 aagttggtgtttaagtgatgattgattttgaacaaaagagagaattagatga 109  Q
    |||||||| |||||  || || ||||||||||||||||||||||||||||||    
T  32564279 aagttggtatttaatggaagaatgattttgaacaaaagagagaattagatga 32564330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 108
Target Start/End: Complemental strand, 41121408 - 41121377
Alignment:
Q  77 gattgattttgaacaaaagagagaattagatg 108  Q
    ||||||||||||||||||||||||||||||||    
T  41121408 gattgattttgaacaaaagagagaattagatg 41121377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 228
Target Start/End: Original strand, 45476416 - 45476515
Alignment:
Q  129 gatttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcata 228  Q
    |||||||  |||||||||| |||||  | ||||||| ||||||||||||||  ||||| | |||||| |||||| | ||| |||||| |||||| |||||    
T  45476416 gatttagagatttgagatttaatttgggaatattgatttttggttcagggactaaagtgaccattttctacttttactttggtccatatgacacatcata 45476515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 32563898 - 32563848
Alignment:
Q  58 aagttggtgtttaagtgatgattgattttgaacaaaagagagaattagatg 108  Q
    ||||| ||||||||  || |||| |||||||||||||||||||||||||||    
T  32563898 aagttagtgtttaatagaagattaattttgaacaaaagagagaattagatg 32563848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 24199174 - 24199101
Alignment:
Q  156 ggatattgagttttgg-ttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcata 228  Q
    ||||||||| |||| | |||||||| |||| | ||||||||||||||||| ||||||   ||||||||||||||    
T  24199174 ggatattgatttttcgattcagggaccaaaatgatcattttttactttcactttagtatctgtgacacctcata 24199101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 310
Target Start/End: Original strand, 28619547 - 28619588
Alignment:
Q  269 ttaacgtcagagactaaagtgataacagaagtgcatagtcaa 310  Q
    |||| |||||||||||||||||||| ||||||||| ||||||    
T  28619547 ttaatgtcagagactaaagtgataatagaagtgcagagtcaa 28619588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 303
Target Start/End: Complemental strand, 28524901 - 28524845
Alignment:
Q  247 catcatcacttagcagaataacttaacgtcagagactaaagtgataacagaagtgca 303  Q
    |||||||| ||| || ||| | |||||||||||||||||| ||||||| ||||||||    
T  28524901 catcatcagttaacaaaattatttaacgtcagagactaaaatgataacggaagtgca 28524845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 28525001 - 28524929
Alignment:
Q  156 ggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcata 228  Q
    ||||||||| ||| |||||| ||| |||| | |  |||||||||||||| |||||||||| |||||| |||||    
T  28525001 ggatattgattttcggttcacggaccaaaatgacaattttttactttcactttagtccatctgacacttcata 28524929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 41754211 - 41754139
Alignment:
Q  156 ggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcata 228  Q
    ||||||||| ||| | |||||||| |||||| |  |||||||||||||| |||||||| | |||||| |||||    
T  41754211 ggatattgattttcgattcagggaccaaagtgactattttttactttcactttagtccctatgacacgtcata 41754139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 45476412 - 45476336
Alignment:
Q  149 aatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctc 225  Q
    |||||| | ||||||| |||||||||||||| |||||| |  ||||| |||||||| ||| |||  |||||||||||    
T  45476412 aatttaggaatattgatttttggttcagggaccaaagtgacaattttctactttcactttggtctctgtgacacctc 45476336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 309
Target Start/End: Original strand, 45476565 - 45476605
Alignment:
Q  269 ttaacgtcagagactaaagtgataacagaagtgcatagtca 309  Q
    |||||| |||||||||||||||||| ||||||||| |||||    
T  45476565 ttaacgacagagactaaagtgataagagaagtgcagagtca 45476605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 116 - 236
Target Start/End: Complemental strand, 79356 - 79236
Alignment:
Q  116 tttgagatttagtgatttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccat 215  Q
    |||||||||||  |||||||||||| ||||||||||||| | ||||||| ||||  |||||||| |||||| |||||||| | ||||||||||||||| |    
T  79356 tttgagatttaaggatttaggaattcgagattcaatttaggcatattgattttttattcagggaccaaagtgatcattttcttctttcattttagtccct 79257  T
Q  216 gtgacacctcatatgtcatgt 236  Q
    |||| ||||||||||||||||    
T  79256 gtgagacctcatatgtcatgt 79236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 82 - 236
Target Start/End: Original strand, 31239789 - 31239947
Alignment:
Q  82 attttgaacaaaagagagaattagatgacag----gggtttgagatttagtgatttaggaatttgagattcaatttatggatattgagttttggttcagg 177  Q
    ||||||||||||||||||||||||| || |     || |||||||||||| |||||| | ||||||||||||||||  ||||||||| |||||||||| |    
T  31239789 attttgaacaaaagagagaattagacgatatttaaggatttgagatttagggatttaaggatttgagattcaatttggggatattgatttttggttcaag 31239888  T
Q  178 gatcaaagtaatcattttttactttcattttagtccatgtgacacctcatatgtcatgt 236  Q
     |  ||||| | |||||| |||||| | |||||| |||||||||||| |||||||||||    
T  31239889 aacaaaagtgaccattttctactttgactttagttcatgtgacaccttatatgtcatgt 31239947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 30748233 - 30748161
Alignment:
Q  156 ggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcata 228  Q
    ||||||||| ||||| |||||||| |||| | | ||||||||||||||| |||||||| |||||||| |||||    
T  30748233 ggatattgatttttgattcagggaccaaattgaccattttttactttcactttagtccctgtgacacgtcata 30748161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 24621302 - 24621249
Alignment:
Q  174 cagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcat 227  Q
    |||||| |||||| |||||||| ||||||||||||||||| ||| |||||||||    
T  24621302 cagggaccaaagtgatcattttctactttcattttagtccttgtaacacctcat 24621249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 5265422 - 5265370
Alignment:
Q  175 agggatcaaagtaatcattttttactttcattttagtccatgtgacacctcat 227  Q
    |||||||||| | || |||||||||||||| |||| |||||||||||||||||    
T  5265422 agggatcaaaatgattattttttactttcactttactccatgtgacacctcat 5265370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 221
Target Start/End: Original strand, 19600098 - 19600189
Alignment:
Q  129 gatttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgaca 221  Q
    ||||||||||| |||||||||||||| ||||||| | ||| | || | ||| |||||| | |||||| |||||||| |||||||| |||||||    
T  19600098 gatttaggaatctgagattcaatttagggatattaattttcgattta-ggaccaaagtgaccattttctactttcactttagtccctgtgaca 19600189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 31219162 - 31219194
Alignment:
Q  269 ttaacgtcagagactaaagtgataacagaagtg 301  Q
    |||||||||||||||||||||||||| ||||||    
T  31219162 ttaacgtcagagactaaagtgataacggaagtg 31219194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 36400 - 36473
Alignment:
Q  131 tttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttca 204  Q
    |||||| ||||||| ||||||||  ||||||||| ||| ||||||||||||||||| | |||||| ||||||||    
T  36400 tttagggatttgagtttcaattttaggatattgattttcggttcagggatcaaagtgaccattttctactttca 36473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 227
Target Start/End: Complemental strand, 8768 - 8672
Alignment:
Q  130 atttaggaatttgagattcaatttatggatattgagttttggttcagggatcaaagtaatcattttttactttcattttagtccatgtgacacctcat 227  Q
    ||||||| |||||||||| || ||  ||||||||| |||||||||| | || ||||| | |||| ||||||| || |||| |||||||||||||||||    
T  8768 atttagggatttgagatttaagttggggatattgatttttggttcacg-attaaagtgaacattctttacttccactttattccatgtgacacctcat 8672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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