View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3762_high_32 (Length: 331)
Name: NF3762_high_32
Description: NF3762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3762_high_32 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 39586821 - 39586503
Alignment:
| Q |
1 |
tagtggaagcgttaagcgctcaaaacttgaatcgttttctgctttcctgtggaaaatggttgcatcagccgcttcaaccaatagtgaaaatgttgttgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39586821 |
tagtggaagcgttaagcgctcaaaacttgaatcgttttctgctttcttgtggaaaatggttgcatcagccgcttcaaccaatagtgaaaatgttgttgca |
39586722 |
T |
|
| Q |
101 |
aaaatggggattgtggttgacggaagaaagagattaagcaacggtgacaaaaacaaagaagagtttatgagttcgtattttgggaatgtgctttcaactc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39586721 |
aaaatggggattgtggttgacggaagaaagagattaagcaacggtgacaaaaacaaagaagagtttatgagttcgtattttgggaatgtgctttcaactc |
39586622 |
T |
|
| Q |
201 |
cctatagttgtagattaatagaagaacttgttgaaaagtcgttatgttgggtgacagagcaagttcatgagtttgtggaggttgcggacacggaagaaca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39586621 |
cctatagttgtagattaatagaagaacttgttgaaaagtcgttatgttgggtgacagagcaagttcatgagtttgtggaggttgcggacacggaagaaca |
39586522 |
T |
|
| Q |
301 |
tttcttgggactaattgat |
319 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
39586521 |
tttcttgggactaattgat |
39586503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 14 - 319
Target Start/End: Complemental strand, 39553701 - 39553396
Alignment:
| Q |
14 |
aagcgctcaaaacttgaatcgttttctgctttcctgtggaaaatggttgcatcagccgcttcaaccaatagtgaaaatgttgttgcaaaaatggggattg |
113 |
Q |
| |
|
|||||||||||||| || || |||||||||||| |||||||||||||||| ||| ||||||| ||||| ||||||| ||||||||||||||||| ||| |
|
|
| T |
39553701 |
aagcgctcaaaactcgagtccttttctgctttcttgtggaaaatggttgccgaagcggcttcaatcaataatgaaaatattgttgcaaaaatggggcttg |
39553602 |
T |
|
| Q |
114 |
tggttgacggaagaaagagattaagcaacggtgacaaaaacaaagaagagtttatgagttcgtattttgggaatgtgctttcaactccctatagttgtag |
213 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||| | ||||||| || |||| |
|
|
| T |
39553601 |
tggttgacggaagaaagaggctaagcaacggtgacaaaaacaaagaagagcttatgaattcatattttgggaatgtgctttcgattccctatggtggtag |
39553502 |
T |
|
| Q |
214 |
attaatagaagaacttgttgaaaagtcgttatgttgggtgacagagcaagttcatgagtttgtggaggttgcggacacggaagaacatttcttgggacta |
313 |
Q |
| |
|
|||| |||||| || ||||| || || ||||||||||| | || | ||||||||||||| |||||| || | || || || ||||||||||| ||| |
|
|
| T |
39553501 |
attagcagaagagctggttgataatccgctatgttgggtggctgatcgagttcatgagtttttggaggcagcagtgacagaggagcatttcttgggtcta |
39553402 |
T |
|
| Q |
314 |
attgat |
319 |
Q |
| |
|
|||||| |
|
|
| T |
39553401 |
attgat |
39553396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 17 - 319
Target Start/End: Complemental strand, 39543679 - 39543377
Alignment:
| Q |
17 |
cgctcaaaacttgaatcgttttctgctttcctgtggaaaatggttgcatcagccgcttcaaccaatagtgaaaatgttgttgcaaaaatggggattgtgg |
116 |
Q |
| |
|
||||||||||| || || |||||||||||| |||||||||||||||| ||| ||||||| ||||| ||||||| ||||||||||||||||| |||||| |
|
|
| T |
39543679 |
cgctcaaaactcgagtccttttctgctttcttgtggaaaatggttgccgaagcggcttcaatcaataatgaaaatattgttgcaaaaatggggcttgtgg |
39543580 |
T |
|
| Q |
117 |
ttgacggaagaaagagattaagcaacggtgacaaaaacaaagaagagtttatgagttcgtattttgggaatgtgctttcaactccctatagttgtagatt |
216 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||| | ||||||| || ||||||| |
|
|
| T |
39543579 |
ttgacggaagaaagaggctaagcaacggtgacaaaaacaaagaagagcttatgaattcatattttgggaatgtgctttcgattccctatggtggtagatt |
39543480 |
T |
|
| Q |
217 |
aatagaagaacttgttgaaaagtcgttatgttgggtgacagagcaagttcatgagtttgtggaggttgcggacacggaagaacatttcttgggactaatt |
316 |
Q |
| |
|
| |||||| || ||||| || || ||||||||||| | || | ||||||||||||| |||||| || | || || || ||||||||||| |||||| |
|
|
| T |
39543479 |
agcagaagagctggttgataatccgctatgttgggtggctgatcgagttcatgagtttttggaggcagcagtgacagaggagcatttcttgggtctaatt |
39543380 |
T |
|
| Q |
317 |
gat |
319 |
Q |
| |
|
||| |
|
|
| T |
39543379 |
gat |
39543377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University