View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3762_high_36 (Length: 290)

Name: NF3762_high_36
Description: NF3762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3762_high_36
NF3762_high_36
[»] chr4 (17 HSPs)
chr4 (17-283)||(253636-253906)
chr4 (118-246)||(5856260-5856388)
chr4 (118-243)||(5562915-5563040)
chr4 (118-243)||(5888146-5888271)
chr4 (118-244)||(5611731-5611857)
chr4 (118-243)||(5897009-5897134)
chr4 (176-259)||(5603671-5603754)
chr4 (120-242)||(5891158-5891279)
chr4 (118-243)||(5551362-5551487)
chr4 (118-242)||(5849936-5850060)
chr4 (192-274)||(5557204-5557286)
chr4 (173-243)||(5854911-5854981)
chr4 (177-240)||(5423075-5423138)
chr4 (177-240)||(5467378-5467441)
chr4 (129-248)||(5573064-5573183)
chr4 (129-248)||(5585271-5585390)
chr4 (180-238)||(3747174-3747232)
[»] chr8 (1 HSPs)
chr8 (195-267)||(1481432-1481504)
[»] chr5 (1 HSPs)
chr5 (177-240)||(20329764-20329827)


Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 17 - 283
Target Start/End: Complemental strand, 253906 - 253636
Alignment:
Q  17 aaattgaatacactattttggtaatatagcacactcattagttactagtgccactaccaccataaaattgtgaatttttgtcctctatggaaccttgaaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  253906 aaattgaatacactattttggtaatatagcacactcattagttactagtgccactaccaccataaaattgtgaatttttgtcctctatggaaccttgaaa 253807  T
Q  117 tttttgtctaggagttgccaataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatac 216  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  253806 tttttgtctaggagttgccgataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatac 253707  T
Q  217 ttaaaaaattccaatcaattgaacaag----atagccctctacatgctggttgtgaatgcaatctctgctc 283  Q
    |||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||    
T  253706 ttaaaaaattccaatcaattgaacaagatatatagccctctacatgctggttgtgaatgcaatctctgctc 253636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 118 - 246
Target Start/End: Original strand, 5856260 - 5856388
Alignment:
Q  118 ttttgtctaggagttgccaataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatact 217  Q
    ||||||| | ||||| |||||||| ||| |||||||| ||| |||| || | || |||||| | | ||||||||||||||| |||||| ||||||| |||    
T  5856260 ttttgtccatgagtttccaataacctaccctccattgcttccaaaacatgatgggaccaataacacttccaagcccaaaaataaatcctagttccacact 5856359  T
Q  218 taaaaaattccaatcaattgaacaagata 246  Q
    ||||||||||||||||||| |||||||||    
T  5856360 taaaaaattccaatcaattaaacaagata 5856388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 118 - 243
Target Start/End: Original strand, 5562915 - 5563040
Alignment:
Q  118 ttttgtctaggagttgccaataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatact 217  Q
    ||||||||| ||||| |||||||||||| |||||||  ||| |||| |  |||| ||||| ||  ||||| ||||||||||||||||| | ||||| |||    
T  5562915 ttttgtctacgagtttccaataacttactctccatttcttccaaaacaagaggggaccaacgatgattccgagcccaaaaacaaatcccaattccacact 5563014  T
Q  218 taaaaaattccaatcaattgaacaag 243  Q
    |||||||||||| |||||||||||||    
T  5563015 taaaaaattccagtcaattgaacaag 5563040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 243
Target Start/End: Complemental strand, 5888271 - 5888146
Alignment:
Q  118 ttttgtctaggagttgccaataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatact 217  Q
    ||||||||| ||||| |||||||||||| |||||||  ||| |||| |  |||| ||||| ||  |||||||| ||||||| |||||| | ||||| |||    
T  5888271 ttttgtctacgagtttccaataacttactctccatttcttccaaaacaagaggggaccaacgatgattccaagtccaaaaataaatcccaattccacact 5888172  T
Q  218 taaaaaattccaatcaattgaacaag 243  Q
    |||||||||||| |||||||||||||    
T  5888171 taaaaaattccattcaattgaacaag 5888146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 118 - 244
Target Start/End: Original strand, 5611731 - 5611857
Alignment:
Q  118 ttttgtctaggagttgccaataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatact 217  Q
    ||||||||| ||||| |||||||||||| |||||||  ||| |||| | ||| | ||| ||||  ||||| ||||||||||||||||| |  |||| |||    
T  5611731 ttttgtctacgagtttccaataacttactctccatttcttccaaaacaaaagaggaccgatgatgattccgagcccaaaaacaaatcccaactccacact 5611830  T
Q  218 taaaaaattccaatcaattgaacaaga 244  Q
    |||||||||||| ||||||||| ||||    
T  5611831 taaaaaattccagtcaattgaagaaga 5611857  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 118 - 243
Target Start/End: Complemental strand, 5897134 - 5897009
Alignment:
Q  118 ttttgtctaggagttgccaataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatact 217  Q
    ||||||||| ||||| |||||||||||| |||||||  ||| |||| |  |||| ||||| ||  |||||||| ||||||| |||||| | ||||| |||    
T  5897134 ttttgtctacgagtttccaataacttactctccatttcttccaaaacaagaggggaccaacgatgattccaagtccaaaaataaatcccaattccacact 5897035  T
Q  218 taaaaaattccaatcaattgaacaag 243  Q
    |||||||||||  |||||||||||||    
T  5897034 taaaaaattccgttcaattgaacaag 5897009  T

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Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 176 - 259
Target Start/End: Original strand, 5603671 - 5603754
Alignment:
Q  176 aatgaaaattccaagcccaaaaacaaatccaagttccatacttaaaaaattccaatcaattgaacaagatagccctctacatgc 259  Q
    ||||| |||||||||||||||||  ||||| | ||||| ||||| ||||||||| ||||||||||||| ||||| |||||||||    
T  5603671 aatgacaattccaagcccaaaaatgaatcccaattccacacttataaaattccagtcaattgaacaagctagccttctacatgc 5603754  T

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Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 242
Target Start/End: Complemental strand, 5891279 - 5891158
Alignment:
Q  120 ttgtctaggagttgccaataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatactta 219  Q
    ||||||| ||||| |||||||||||| |||||||  ||| |||  | | |||| |||||||  ||||| | ||||||||||||||| |  |||| |||||    
T  5891279 ttgtctacgagtttccaataacttactctccatttcttccaaacaagagggga-ccaatgatgattccgaacccaaaaacaaatcccaactccacactta 5891181  T
Q  220 aaaaattccaatcaattgaacaa 242  Q
    |||||||||||||||||||||||    
T  5891180 aaaaattccaatcaattgaacaa 5891158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 118 - 243
Target Start/End: Original strand, 5551362 - 5551487
Alignment:
Q  118 ttttgtctaggagttgccaataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatact 217  Q
    ||||||||  ||||| |||||| ||||| |||||||  ||| |||| |  |||| ||  ||||  ||||||||||||||||||||||| |  |||| |||    
T  5551362 ttttgtctgcgagtttccaatagcttactctccatttcttccaaaacaagaggggacagatgatgattccaagcccaaaaacaaatcccaactccacact 5551461  T
Q  218 taaaaaattccaatcaattgaacaag 243  Q
    |||||||||||| |||||||||||||    
T  5551462 taaaaaattccagtcaattgaacaag 5551487  T

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Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 118 - 242
Target Start/End: Complemental strand, 5850060 - 5849936
Alignment:
Q  118 ttttgtctaggagttgccaataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatact 217  Q
    ||||||||| ||||| |||||||||||| |||||||  ||| |||| |  |||| |   |||| |||||| ||||||||||||||||| |  |||| |||    
T  5850060 ttttgtctacgagtttccaataacttactctccatttcttccaaaacaagaggggagtgatgataattccgagcccaaaaacaaatcccaactccacact 5849961  T
Q  218 taaaaaattccaatcaattgaacaa 242  Q
    |||||||||||| ||||| ||||||    
T  5849960 taaaaaattccagtcaatcgaacaa 5849936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 274
Target Start/End: Original strand, 5557204 - 5557286
Alignment:
Q  192 ccaaaaacaaatccaagttccatacttaaaaaattccaatcaattgaacaagatagccctctacatgctggttgtgaatgcaa 274  Q
    ||||| |||||||| ||||| | ||||| ||||||||| |||||||||||||  |||| || |||||||||||||| ||||||    
T  5557204 ccaaacacaaatcccagttctacacttataaaattccagtcaattgaacaagtaagccttccacatgctggttgtggatgcaa 5557286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 243
Target Start/End: Complemental strand, 5854981 - 5854911
Alignment:
Q  173 accaatgaaaattccaagcccaaaaacaaatccaagttccatacttaaaaaattccaatcaattgaacaag 243  Q
    ||||||||  ||||| ||||||||||||||||| |  |||||||| ||||||||||| |||||||||||||    
T  5854981 accaatgatgattccgagcccaaaaacaaatcccaactccatactcaaaaaattccagtcaattgaacaag 5854911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 5423075 - 5423138
Alignment:
Q  177 atgaaaattccaagcccaaaaacaaatccaagttccatacttaaaaaattccaatcaattgaac 240  Q
    |||||||||||||| ||||||| |||||| |  |||| |||||| |||||||||||||||||||    
T  5423075 atgaaaattccaaggccaaaaataaatcccaactccacacttaagaaattccaatcaattgaac 5423138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 5467378 - 5467441
Alignment:
Q  177 atgaaaattccaagcccaaaaacaaatccaagttccatacttaaaaaattccaatcaattgaac 240  Q
    |||||||||||||| ||||||| | |||| |  ||||||||||| ||| |||||||||||||||    
T  5467378 atgaaaattccaaggccaaaaatacatcccaactccatacttaagaaactccaatcaattgaac 5467441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 248
Target Start/End: Complemental strand, 5573183 - 5573064
Alignment:
Q  129 agttgccaataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatacttaaaaaattcc 228  Q
    |||| |||||| ||||  |||||||| ||| |||| || || | |||||||| |||||| || ||||||||||| || | ||| | ||||||||| ||||    
T  5573183 agtttccaatatcttatcctccattgcttccaaaacattagaggaccaatgacaattccgagaccaaaaacaaaccccaattctacacttaaaaatttcc 5573084  T
Q  229 aatcaattgaacaagatagc 248  Q
    | ||  ||||||||||||||    
T  5573083 agtctgttgaacaagatagc 5573064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 248
Target Start/End: Complemental strand, 5585390 - 5585271
Alignment:
Q  129 agttgccaataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatacttaaaaaattcc 228  Q
    |||| |||||| ||||  |||||||| ||| |||| || || | |||||||| |||||| || ||||||||||| || | ||| | ||||||||| ||||    
T  5585390 agtttccaatatcttatcctccattgcttccaaaacattagaggaccaatgacaattccgagaccaaaaacaaaccccaattctacacttaaaaatttcc 5585291  T
Q  229 aatcaattgaacaagatagc 248  Q
    | ||  ||||||||||||||    
T  5585290 agtctgttgaacaagatagc 5585271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 3747174 - 3747232
Alignment:
Q  180 aaaattccaagcccaaaaacaaatccaagttccatacttaaaaaattccaatcaattga 238  Q
    ||||| |||||||| ||||||||||||| ||||| |||||||| |||||| ||| ||||    
T  3747174 aaaatcccaagcccgaaaacaaatccaaattccacacttaaaatattccagtcacttga 3747232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 267
Target Start/End: Original strand, 1481432 - 1481504
Alignment:
Q  195 aaaacaaatccaagttccatacttaaaaaattccaatcaattgaacaagatagccctctacatgctggttgtg 267  Q
    |||| |||||| | ||||| ||||| ||||||||| |||| |||||||| |||||||||||||| ||||||||    
T  1481432 aaaataaatcctaattccacacttagaaaattccagtcaactgaacaagctagccctctacatgttggttgtg 1481504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 240
Target Start/End: Complemental strand, 20329827 - 20329764
Alignment:
Q  177 atgaaaattccaagcccaaaaacaaatccaagttccatacttaaaaaattccaatcaattgaac 240  Q
    |||||||||||||| ||||||| |||||| |  |||| |||||| |||||||||||||||||||    
T  20329827 atgaaaattccaaggccaaaaataaatcccaactccacacttaagaaattccaatcaattgaac 20329764  T

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