View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3762_high_38 (Length: 259)
Name: NF3762_high_38
Description: NF3762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3762_high_38 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 9e-85; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 6897235 - 6897029
Alignment:
| Q |
1 |
cctatggtgatgatatgatctttaactgcgattttcagtttaacatttttacttttagaaagaagcggtcaaaattattattnnnnnnnnnnnnttgaat |
100 |
Q |
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| T |
6897235 |
cctatggtgatgatatgatctttaactgcgattttcagtttaacatttttacttttagaaagaagcggtcaaaattattattaaaaataaaaaattgaat |
6897136 |
T |
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| Q |
101 |
gtcatggtactttgttttcagtgaaatttggtgttttaaggaaattctttaggctctatctgtcgacataacatcaaacagaagcagtggctgtctacaa |
200 |
Q |
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| T |
6897135 |
gtcatggtactttgttttcagtgaaatttgttgttttaagcaaattctttaggctctatctgttgacataacatcaaacagaagcagtggctgtctacaa |
6897036 |
T |
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| Q |
201 |
gaatttt |
207 |
Q |
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||||||| |
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| T |
6897035 |
gaatttt |
6897029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 155 - 245
Target Start/End: Complemental strand, 6879508 - 6879418
Alignment:
| Q |
155 |
tctatctgtcgacataacatcaaacagaagcagtggctgtctacaagaattttctcattgttctctgatgtattcatgttatataccaaat |
245 |
Q |
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| T |
6879508 |
tctatctgttgacatagcatcaaacagaaacagtgactgtctagaagaattttctgatttttctctgatgtattcatgttatataccaaat |
6879418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 245
Target Start/End: Complemental strand, 6165771 - 6165704
Alignment:
| Q |
178 |
acagaagcagtggctgtctacaagaattttctcattgttctctgatgtattcatgttatataccaaat |
245 |
Q |
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| T |
6165771 |
acagaaacagtggctgcctacaagaattttctcatttttctctgctatattcatgttatatgccaaat |
6165704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 137
Target Start/End: Complemental strand, 6879701 - 6879574
Alignment:
| Q |
3 |
tatggtgatgatatgatctttaactgcgattttcagtttaacatttttacttttagaaagaagcggtcaaaattattattnnnnnnnnnnnnttgaatgt |
102 |
Q |
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||||||| |||||||||||||| ||| |||||||||||| ||||||||| | ||||||||| | ||||||||||||| |||||||| |
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| T |
6879701 |
tatggtgttgatatgatctttatctgtgattttcagttttacatttttattgttagaaagagctgatcaaaattattat-------aaaaaattgaatgt |
6879609 |
T |
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| Q |
103 |
catggtactttgttttcagtgaaatttggtgtttt |
137 |
Q |
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||||| |||||||| |||||||||||||||||||| |
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| T |
6879608 |
catggcactttgttatcagtgaaatttggtgtttt |
6879574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 244
Target Start/End: Complemental strand, 6235002 - 6234936
Alignment:
| Q |
178 |
acagaagcagtggctgtctacaagaattttctcattgttctctgatgtattcatgttatataccaaa |
244 |
Q |
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|||||| || |||||| || |||||||||||||| | ||||||| | |||||||||||||| ||||| |
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| T |
6235002 |
acagaaacattggctggctgcaagaattttctcacttttctctgctatattcatgttatatgccaaa |
6234936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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